RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 A0A1W2PNM2 257 aa2.31□□□□□ -2.04
VMP1-216ENST00000592790 LRCOL1A6NCL2 159 aa2.31□□□□□ -2.04
VMP1-216ENST00000592790 PRB2P02812 416 aaPredicted RBP2.31□□□□□ -2.04
VMP1-216ENST00000592790 CR1P17927 2039 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 COL6A5A8TX70 2615 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 DNAH9Q9NYC9 4486 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 SPRR1AP35321 89 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 ATP11AUNQ6ZP68 121 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 PHF5AQ7RTV0 110 aaKnown RBP2.3□□□□□ -2.04
VMP1-216ENST00000592790 IGFL1Q6UW32 110 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 ST20-AS1Q8NBB2 130 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 KRTAP17-1Q9BYP8 105 aa2.3□□□□□ -2.04
VMP1-216ENST00000592790 A0A087X002 238 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 LOC101927531A0A1B0GV80 90 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 PRLHP81277 87 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 IGLV8-61A0A075B6I0 122 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 NUPR2A6NF83 97 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 KRTAP1-1Q07627 177 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 Q8NDZ9 215 aa2.29□□□□□ -2.04
VMP1-216ENST00000592790 HRNRQ86YZ3 2850 aaPredicted RBP2.29□□□□□ -2.04
VMP1-216ENST00000592790 A0A096LNI7 61 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 ACYP2P14621 99 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 DSCR10P59022 87 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 CNBPP62633 177 aaKnown RBP2.28□□□□□ -2.04
VMP1-216ENST00000592790 KTN1-AS1Q86SY8 53 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 LINC00588Q9Y4M8 146 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 KMT2AQ03164 3969 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 LRBAP50851 2863 aa2.28□□□□□ -2.04
VMP1-216ENST00000592790 TEP1Q99973 2627 aaKnown RBP2.28□□□□□ -2.04
VMP1-216ENST00000592790 IGLV9-49A0A0B4J1Y8 123 aa2.28□□□□□ -2.05
VMP1-216ENST00000592790 KRTAP10-3P60369 221 aa2.28□□□□□ -2.05
VMP1-216ENST00000592790 COA5Q86WW8 74 aa2.28□□□□□ -2.05
VMP1-216ENST00000592790 SMR3AQ99954 134 aa2.28□□□□□ -2.05
VMP1-216ENST00000592790 IGHV6-1A0A0B4J1U7 121 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 LCE6AA0A183 80 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 A8MUN3 132 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 C8orf87E5RJ46 101 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 DEFB116Q30KQ4 102 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 FAT2Q9NYQ8 4349 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 ITPR1Q14643 2758 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 DSPP15924 2871 aaKnown RBP2.27□□□□□ -2.05
VMP1-216ENST00000592790 RBM12B-AS1Q9P1G2 102 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 ZNF292O60281 2723 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 PCOTHQ58A44 107 aa2.27□□□□□ -2.05
VMP1-216ENST00000592790 KRTAP26-1Q6PEX3 210 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 FAM168BA1KXE4 195 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 SPRR1BP22528 89 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 MRPL34Q9BQ48 92 aaKnown RBP2.26□□□□□ -2.05
VMP1-216ENST00000592790 PKD1P98161 4303 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 FAT3Q8TDW7 4589 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 IGLV7-46A0A075B6I9 117 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 Q75L30 129 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 CDC42SE1Q9NRR8 79 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 PKHD1L1Q86WI1 4243 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 FBN3Q75N90 2809 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 ZCCHC13Q8WW36 166 aaKnown RBP2.26□□□□□ -2.05
VMP1-216ENST00000592790 C8orf17Q9NRJ1 99 aa2.26□□□□□ -2.05
VMP1-216ENST00000592790 A0A1B0GVX0 72 aa2.25□□□□□ -2.05
VMP1-216ENST00000592790 K7ERS5 55 aa2.25□□□□□ -2.05
VMP1-216ENST00000592790 KRTAP4-16G5E9R7 235 aaPredicted RBP2.25□□□□□ -2.05
VMP1-216ENST00000592790 ASB16-AS1Q495Z4 193 aa2.25□□□□□ -2.05
VMP1-216ENST00000592790 FAM229BQ4G0N7 80 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 C7orf65Q6ZTY9 151 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 SPAG11AQ6PDA7 123 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 SPINK6Q6UWN8 80 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 C9orf163Q8N9P6 203 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 A0A1B0GU69 56 aa2.24□□□□□ -2.05
VMP1-216ENST00000592790 FLG2Q5D862 2391 aaPredicted RBP2.24□□□□□ -2.05
VMP1-216ENST00000592790 NOTCH2NLQ7Z3S9 236 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 Q8N9P0 234 aaPredicted RBP2.23□□□□□ -2.05
VMP1-216ENST00000592790 LINC01558Q9Y6Z2 57 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 HECTD1Q9ULT8 2610 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 NBDYA0A0U1RRE5 68 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 KRTAP10-11P60412 298 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 FLNAP21333 2647 aaKnown RBP2.23□□□□□ -2.05
VMP1-216ENST00000592790 SSBP3-AS1Q7Z2R9 100 aa2.23□□□□□ -2.05
VMP1-216ENST00000592790 ITPR3Q14573 2671 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 A6NN06 94 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 LCA10Q71F78 164 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 LINC00472Q9H8W2 130 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 IGLV5-52A0A0A0MRZ9 124 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 MMP24-AS1A0A0U1RRL7 71 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 CIRBP-AS1Q8TBR5 109 aa2.22□□□□□ -2.05
VMP1-216ENST00000592790 DNAH2Q9P225 4427 aa2.21□□□□□ -2.05
VMP1-216ENST00000592790 DNAH17Q9UFH2 4485 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 A0A1W2PNN7 141 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 KRTAP29-1A8MX34 341 aaPredicted RBP2.21□□□□□ -2.06
VMP1-216ENST00000592790 Q5VV11 94 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 ALMS1Q8TCU4 4167 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 AKAP13Q12802 2813 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 UQCR11O14957 56 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 LINC00313P59037 77 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 ZNF861PO60384 105 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 WWC2-AS2Q96NR7 200 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 RETNLBQ9BQ08 111 aa2.21□□□□□ -2.06
VMP1-216ENST00000592790 LY6G6CO95867 125 aa2.2□□□□□ -2.06
VMP1-216ENST00000592790 KRTAP24-1Q3LI83 254 aa2.2□□□□□ -2.06
VMP1-216ENST00000592790 Q6ZR54 194 aa2.2□□□□□ -2.06
VMP1-216ENST00000592790 CASC10Q5T4H9 136 aa2.2□□□□□ -2.06
VMP1-216ENST00000592790 C1orf134Q5TEV5 83 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms