RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DEFB114Q30KQ6 69 aa2.77□□□□□ -1.97
LIG3-211ENST00000588713 FP248Q71RG6 208 aaPredicted RBP2.77□□□□□ -1.97
LIG3-211ENST00000588713 IGLV4-60A0A075B6I1 120 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 TRBV7-6A0A0J9YX20 115 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 A0A1B0GUV1 79 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 PLAC8L1A1L4L8 177 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 PRYO14603 147 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 MIFP14174 115 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 C6orf99Q4VX62 202 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 C6orf226Q5I0X4 101 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 RMI2Q96E14 147 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 C1orf43Q9BWL3 253 aa2.76□□□□□ -1.97
LIG3-211ENST00000588713 TRGV2A0A075B6R0 118 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 TRGV4A0A0C4DH28 118 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 IGLV6-57P01721 117 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 PRM2P04554 102 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.75□□□□□ -1.97
LIG3-211ENST00000588713 LINC00612Q8N6U2 182 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 TMEM254Q8TBM7 123 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 LPAP08519 4548 aa2.75□□□□□ -1.97
LIG3-211ENST00000588713 IGKV3OR2-268A0A0C4DH90 116 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 MT1HL1P0DM35 61 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 GYPEP15421 78 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 COX7BP24311 80 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 KIAA0087Q14695 138 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 ESRGQ1W209 222 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 C1orf195Q5TG92 126 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 CD164L2Q6UWJ8 174 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 DIRC1Q969H9 104 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 NOP10Q9NPE3 64 aaKnown RBP2.74□□□□□ -1.97
LIG3-211ENST00000588713 LAMTOR3Q9UHA4 124 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 SNURFQ9Y675 71 aa2.74□□□□□ -1.97
LIG3-211ENST00000588713 GVQW2A0A096LPI5 108 aaPredicted RBP2.73□□□□□ -1.97
LIG3-211ENST00000588713 A0A1B0GW54 56 aa2.73□□□□□ -1.97
LIG3-211ENST00000588713 BPY2O14599 106 aa2.73□□□□□ -1.97
LIG3-211ENST00000588713 ELOF1P60002 83 aaKnown RBP2.73□□□□□ -1.97
LIG3-211ENST00000588713 Q6ZQY7 126 aa2.73□□□□□ -1.97
LIG3-211ENST00000588713 BRK1Q8WUW1 75 aa2.73□□□□□ -1.97
LIG3-211ENST00000588713 V9GYY9 64 aa2.73□□□□□ -1.97
LIG3-211ENST00000588713 IGKV4-1P06312 121 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 GIG44P09565 113 aaPredicted RBP2.72□□□□□ -1.97
LIG3-211ENST00000588713 SPAG11BQ08648 103 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 PRR15Q8IV56 129 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 CSNK1G2-AS1Q8NCQ2 148 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 OCR1Q9BZK8 76 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 CELA1Q9UNI1 258 aa2.72□□□□□ -1.97
LIG3-211ENST00000588713 Q8NAQ8 132 aa2.71□□□□□ -1.98
LIG3-211ENST00000588713 Q8NDZ9 215 aa2.71□□□□□ -1.98
LIG3-211ENST00000588713 CHCHD10Q8WYQ3 142 aaPredicted RBP2.71□□□□□ -1.98
LIG3-211ENST00000588713 LINC00474Q9P2X8 69 aa2.71□□□□□ -1.98
LIG3-211ENST00000588713 PKIGQ9Y2B9 76 aa2.71□□□□□ -1.98
LIG3-211ENST00000588713 hDV103S1A0JD37 113 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 ZNF73O43830 326 aaPredicted RBP2.7□□□□□ -1.98
LIG3-211ENST00000588713 DNAH10OSP0CZ25 163 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 HTN3P15516 51 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 PRR3P79522 188 aaKnown RBP2.7□□□□□ -1.98
LIG3-211ENST00000588713 REG3AQ06141 175 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 Q1T7F1 81 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 FAM229BQ4G0N7 80 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 CLPSL2Q6UWE3 100 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 Q6ZRU5 148 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 KRTAP1-5Q9BYS1 174 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 FAM30AQ9NZY2 134 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 PRO0255Q9UI72 69 aa2.7□□□□□ -1.98
LIG3-211ENST00000588713 LYRM9A8MSI8 78 aa2.69□□□□□ -1.98
LIG3-211ENST00000588713 SEC61GP60059 68 aa2.69□□□□□ -1.98
LIG3-211ENST00000588713 SCXQ7RTU7 201 aa2.69□□□□□ -1.98
LIG3-211ENST00000588713 LINC00269Q8N2A0 174 aa2.69□□□□□ -1.98
LIG3-211ENST00000588713 CYP4F30PQ9H0H9 118 aa2.69□□□□□ -1.98
LIG3-211ENST00000588713 DNAH8Q96JB1 4490 aa2.68□□□□□ -1.98
LIG3-211ENST00000588713 M0R378 163 aa2.68□□□□□ -1.98
LIG3-211ENST00000588713 ANGP03950 147 aaKnown RBP2.68□□□□□ -1.98
LIG3-211ENST00000588713 VPREB1P12018 145 aa2.68□□□□□ -1.98
LIG3-211ENST00000588713 KRTAP10-4P60372 401 aaPredicted RBP2.68□□□□□ -1.98
LIG3-211ENST00000588713 C9orf116Q5BN46 136 aaPredicted RBP2.68□□□□□ -1.98
LIG3-211ENST00000588713 ZCCHC13Q8WW36 166 aaKnown RBP2.68□□□□□ -1.98
LIG3-211ENST00000588713 PRR34Q9NV39 138 aa2.68□□□□□ -1.98
LIG3-211ENST00000588713 IGLV5-52A0A0A0MRZ9 124 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 KRTAP23-1A1A580 65 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 NDUFB1O75438 58 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 KRTAP15-1Q3LI76 137 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 HIGD2BQ4VC39 106 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 UNQ6190/PRO20217Q6UXQ8 127 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 SMIM29Q86T20 159 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 MPLKIPQ8TAP9 179 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 C6orf48Q9UBA6 75 aa2.67□□□□□ -1.98
LIG3-211ENST00000588713 IGLV10-54A0A075B6I4 117 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 IGLV5-48A0A075B6I7 105 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 A0A087WTM6 91 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 DEFB130BP0DP73 79 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 DEFB130AP0DP74 79 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 DAD1P61803 113 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 C10orf25Q5T742 122 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 HIGD2AQ9BW72 106 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 LINC00588Q9Y4M8 146 aa2.66□□□□□ -1.98
LIG3-211ENST00000588713 ETDCA0A1B0GVM5 59 aa2.65□□□□□ -1.99
LIG3-211ENST00000588713 UBE2BP63146 152 aa2.65□□□□□ -1.99
LIG3-211ENST00000588713 PMAIP1Q13794 54 aa2.65□□□□□ -1.99
LIG3-211ENST00000588713 Q6ZRN7 208 aaPredicted RBP2.65□□□□□ -1.99
LIG3-211ENST00000588713 Q6ZRP5 223 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms