RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 J3QL48 77 aa12.21□□□□□ -0.46
ATG4D-208ENST00000588667 PRLHP81277 87 aa12.19□□□□□ -0.46
ATG4D-208ENST00000588667 UBE2AP49459 152 aa12.19□□□□□ -0.46
ATG4D-208ENST00000588667 KRTAP13-1Q8IUC0 172 aa12.17□□□□□ -0.46
ATG4D-208ENST00000588667 SMCR5Q8TEV8 140 aa12.16□□□□□ -0.46
ATG4D-208ENST00000588667 PPDPFLQ8WWR9 84 aa12.16□□□□□ -0.46
ATG4D-208ENST00000588667 HIGD2AQ9BW72 106 aa12.15□□□□□ -0.47
ATG4D-208ENST00000588667 TEX49A0A1B0GTD5 131 aa12.14□□□□□ -0.47
ATG4D-208ENST00000588667 ERC2-IT1O76042 136 aa12.12□□□□□ -0.47
ATG4D-208ENST00000588667 MT1HL1P0DM35 61 aa12.11□□□□□ -0.47
ATG4D-208ENST00000588667 TNXBP22105 4242 aa12.11□□□□□ -0.47
ATG4D-208ENST00000588667 J3QR89 54 aa12.11□□□□□ -0.47
ATG4D-208ENST00000588667 JMJD7-PLA2G4BH0Y9G9 81 aa12.1□□□□□ -0.47
ATG4D-208ENST00000588667 K7ERU9 68 aa12.1□□□□□ -0.47
ATG4D-208ENST00000588667 DEFB105AQ8NG35 78 aa12.1□□□□□ -0.47
ATG4D-208ENST00000588667 LAMTOR3Q9UHA4 124 aa12.1□□□□□ -0.47
ATG4D-208ENST00000588667 IGLV5-48A0A075B6I7 105 aa12.09□□□□□ -0.47
ATG4D-208ENST00000588667 KRTAP1-4P0C5Y4 121 aa12.08□□□□□ -0.48
ATG4D-208ENST00000588667 ST20-AS1Q8NBB2 130 aa12.08□□□□□ -0.48
ATG4D-208ENST00000588667 OBSCN-AS1Q96MR7 158 aa12.08□□□□□ -0.48
ATG4D-208ENST00000588667 HERC1Q15751 4861 aa12.08□□□□□ -0.48
ATG4D-208ENST00000588667 LINC01547P58512 204 aaPredicted RBP12.07□□□□□ -0.48
ATG4D-208ENST00000588667 Q8N377 158 aa12.07□□□□□ -0.48
ATG4D-208ENST00000588667 NDUFV3P56181 108 aaKnown RBP12.05□□□□□ -0.48
ATG4D-208ENST00000588667 KRTAP10-8P60410 259 aa12.04□□□□□ -0.48
ATG4D-208ENST00000588667 A0A1B0GV72 72 aa12.02□□□□□ -0.49
ATG4D-208ENST00000588667 RBM3P98179 157 aaKnown RBP12.02□□□□□ -0.49
ATG4D-208ENST00000588667 C14orf132Q9NPU4 83 aa12.02□□□□□ -0.49
ATG4D-208ENST00000588667 PRR26Q8N8Z3 221 aa12.01□□□□□ -0.49
ATG4D-208ENST00000588667 DSCR8Q96T75 97 aa11.98□□□□□ -0.49
ATG4D-208ENST00000588667 ZNF706Q9Y5V0 76 aaPredicted RBP11.98□□□□□ -0.49
ATG4D-208ENST00000588667 SPRR1BP22528 89 aa11.97□□□□□ -0.49
ATG4D-208ENST00000588667 GAGE2AQ6NT46 116 aa11.97□□□□□ -0.49
ATG4D-208ENST00000588667 C3orf22Q8N5N4 141 aa11.96□□□□□ -0.5
ATG4D-208ENST00000588667 PDE6GP18545 87 aa11.95□□□□□ -0.5
ATG4D-208ENST00000588667 LOC110117498A0A087WWA1 95 aa11.94□□□□□ -0.5
ATG4D-208ENST00000588667 F8WEM9 126 aa11.94□□□□□ -0.5
ATG4D-208ENST00000588667 CRYGAP11844 174 aa11.94□□□□□ -0.5
ATG4D-208ENST00000588667 FAM229BQ4G0N7 80 aa11.94□□□□□ -0.5
ATG4D-208ENST00000588667 A0A087X002 238 aa11.93□□□□□ -0.5
ATG4D-208ENST00000588667 SMIM29Q86T20 159 aa11.93□□□□□ -0.5
ATG4D-208ENST00000588667 SPRR4Q96PI1 79 aa11.93□□□□□ -0.5
ATG4D-208ENST00000588667 ANAPC11Q9NYG5 84 aa11.93□□□□□ -0.5
ATG4D-208ENST00000588667 FAM240AA0A1B0GVK7 77 aa11.92□□□□□ -0.5
ATG4D-208ENST00000588667 C21orf62-AS1Q17RA5 79 aa11.92□□□□□ -0.5
ATG4D-208ENST00000588667 TRBV7-4A0A0J9YYF1 115 aa11.91□□□□□ -0.5
ATG4D-208ENST00000588667 CCKP06307 115 aa11.91□□□□□ -0.5
ATG4D-208ENST00000588667 ACYP1P07311 99 aa11.9□□□□□ -0.5
ATG4D-208ENST00000588667 Q6ZQT0 140 aa11.9□□□□□ -0.5
ATG4D-208ENST00000588667 LINC00483Q53H64 154 aa11.89□□□□□ -0.51
ATG4D-208ENST00000588667 KRTAP13-2Q52LG2 175 aa11.86□□□□□ -0.51
ATG4D-208ENST00000588667 TYMSOSQ8TAI1 123 aa11.86□□□□□ -0.51
ATG4D-208ENST00000588667 IGLV8-61A0A075B6I0 122 aa11.85□□□□□ -0.51
ATG4D-208ENST00000588667 VPS25Q9BRG1 176 aa11.82□□□□□ -0.52
ATG4D-208ENST00000588667 Q6JHZ5 121 aa11.81□□□□□ -0.52
ATG4D-208ENST00000588667 CDIP1Q9H305 208 aa11.78□□□□□ -0.52
ATG4D-208ENST00000588667 IGFL1Q6UW32 110 aa11.78□□□□□ -0.52
ATG4D-208ENST00000588667 IGLV9-49A0A0B4J1Y8 123 aa11.77□□□□□ -0.53
ATG4D-208ENST00000588667 C9orf153Q5TBE3 101 aa11.76□□□□□ -0.53
ATG4D-208ENST00000588667 Q8NBF4 154 aa11.75□□□□□ -0.53
ATG4D-208ENST00000588667 LINC00846Q9NV44 126 aa11.75□□□□□ -0.53
ATG4D-208ENST00000588667 A0A1B0GW54 56 aa11.75□□□□□ -0.53
ATG4D-208ENST00000588667 HMCN2Q8NDA2 5059 aa11.74□□□□□ -0.53
ATG4D-208ENST00000588667 A0A1W2PNM2 257 aa11.74□□□□□ -0.53
ATG4D-208ENST00000588667 LINC00304Q8N9R0 145 aa11.73□□□□□ -0.53
ATG4D-208ENST00000588667 MOBPQ13875 183 aa11.71□□□□□ -0.54
ATG4D-208ENST00000588667 UBL5Q9BZL1 73 aa11.71□□□□□ -0.54
ATG4D-208ENST00000588667 A0A0G2JQZ4 141 aa11.69□□□□□ -0.54
ATG4D-208ENST00000588667 LINC00643Q86TS7 51 aa11.68□□□□□ -0.54
ATG4D-208ENST00000588667 Q6Q795 121 aa11.67□□□□□ -0.54
ATG4D-208ENST00000588667 SSBP3-AS1Q7Z2R9 100 aa11.66□□□□□ -0.54
ATG4D-208ENST00000588667 SPAG11AQ6PDA7 123 aa11.65□□□□□ -0.54
ATG4D-208ENST00000588667 Q6ZVQ6 151 aa11.63□□□□□ -0.55
ATG4D-208ENST00000588667 SIGMAR1Q99720 223 aa11.63□□□□□ -0.55
ATG4D-208ENST00000588667 C4orf48Q5BLP8 95 aa11.62□□□□□ -0.55
ATG4D-208ENST00000588667 NREPQ16612 68 aa11.6□□□□□ -0.55
ATG4D-208ENST00000588667 TRBV7-7A0A0K0K1E9 115 aa11.6□□□□□ -0.55
ATG4D-208ENST00000588667 A0A087WSZ3 146 aa11.59□□□□□ -0.55
ATG4D-208ENST00000588667 MT-ATP8P03928 68 aa11.59□□□□□ -0.55
ATG4D-208ENST00000588667 ATP5EP2Q5VTU8 51 aa11.58□□□□□ -0.56
ATG4D-208ENST00000588667 SPINK1P00995 79 aa11.57□□□□□ -0.56
ATG4D-208ENST00000588667 CD164Q04900 197 aa11.55□□□□□ -0.56
ATG4D-208ENST00000588667 HRCT1Q6UXD1 115 aa11.54□□□□□ -0.56
ATG4D-208ENST00000588667 RPS29P62273 56 aaKnown RBP11.53□□□□□ -0.56
ATG4D-208ENST00000588667 PRR4Q16378 134 aa11.53□□□□□ -0.56
ATG4D-208ENST00000588667 IGKV3D-7A0A0C4DH55 119 aa11.52□□□□□ -0.57
ATG4D-208ENST00000588667 SS18L2Q9UHA2 77 aa11.51□□□□□ -0.57
ATG4D-208ENST00000588667 CXCL6P80162 114 aa11.5□□□□□ -0.57
ATG4D-208ENST00000588667 LRP2P98164 4655 aa11.5□□□□□ -0.57
ATG4D-208ENST00000588667 RETNLBQ9BQ08 111 aa11.49□□□□□ -0.57
ATG4D-208ENST00000588667 BPY2O14599 106 aa11.49□□□□□ -0.57
ATG4D-208ENST00000588667 IMUPQ9GZP8 106 aa11.49□□□□□ -0.57
ATG4D-208ENST00000588667 LPAP08519 4548 aa11.42□□□□□ -0.58
ATG4D-208ENST00000588667 LINC00472Q9H8W2 130 aa11.42□□□□□ -0.58
ATG4D-208ENST00000588667 HIST1H4AP62805 103 aaKnown RBP11.41□□□□□ -0.58
ATG4D-208ENST00000588667 FP248Q71RG6 208 aaPredicted RBP11.4□□□□□ -0.58
ATG4D-208ENST00000588667 LIMD2Q9BT23 127 aa11.4□□□□□ -0.58
ATG4D-208ENST00000588667 J3KT08 172 aa11.38□□□□□ -0.59
ATG4D-208ENST00000588667 IGLV7-46A0A075B6I9 117 aa11.38□□□□□ -0.59
ATG4D-208ENST00000588667 DEFB116Q30KQ4 102 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 212 ms