RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 FP248Q71RG6 208 aaPredicted RBP6.26□□□□□ -1.41
VPS53-206ENST00000570359 C14orf177Q52M58 125 aa6.25□□□□□ -1.41
VPS53-206ENST00000570359 C1orf137Q5JT78 98 aa6.25□□□□□ -1.41
VPS53-206ENST00000570359 SPRR1AP35321 89 aa6.25□□□□□ -1.41
VPS53-206ENST00000570359 H3BQ85 93 aa6.24□□□□□ -1.41
VPS53-206ENST00000570359 PDE6GP18545 87 aa6.24□□□□□ -1.41
VPS53-206ENST00000570359 NREPQ16612 68 aa6.24□□□□□ -1.41
VPS53-206ENST00000570359 BPY2O14599 106 aa6.24□□□□□ -1.41
VPS53-206ENST00000570359 UBE2AP49459 152 aa6.24□□□□□ -1.41
VPS53-206ENST00000570359 DEFB116Q30KQ4 102 aa6.23□□□□□ -1.41
VPS53-206ENST00000570359 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.23□□□□□ -1.41
VPS53-206ENST00000570359 DYNC2H1Q8NCM8 4307 aaKnown RBP6.23□□□□□ -1.41
VPS53-206ENST00000570359 C9orf163Q8N9P6 203 aa6.23□□□□□ -1.41
VPS53-206ENST00000570359 F8WEM9 126 aa6.23□□□□□ -1.41
VPS53-206ENST00000570359 Q6ZRN7 208 aaPredicted RBP6.23□□□□□ -1.41
VPS53-206ENST00000570359 A0A1W2PNM2 257 aa6.22□□□□□ -1.41
VPS53-206ENST00000570359 CXCL6P80162 114 aa6.21□□□□□ -1.42
VPS53-206ENST00000570359 LINC00476Q8WZB0 136 aa6.21□□□□□ -1.42
VPS53-206ENST00000570359 V9GYY9 64 aa6.21□□□□□ -1.42
VPS53-206ENST00000570359 A0A087WTM6 91 aa6.2□□□□□ -1.42
VPS53-206ENST00000570359 C1orf195Q5TG92 126 aa6.19□□□□□ -1.42
VPS53-206ENST00000570359 PKIGQ9Y2B9 76 aa6.19□□□□□ -1.42
VPS53-206ENST00000570359 SEC61GP60059 68 aa6.19□□□□□ -1.42
VPS53-206ENST00000570359 IGLV5-48A0A075B6I7 105 aa6.18□□□□□ -1.42
VPS53-206ENST00000570359 RTL8CO15255 209 aa6.18□□□□□ -1.42
VPS53-206ENST00000570359 VPS13DQ5THJ4 4388 aa6.18□□□□□ -1.42
VPS53-206ENST00000570359 SMIM29Q86T20 159 aa6.18□□□□□ -1.42
VPS53-206ENST00000570359 IGFL1Q6UW32 110 aa6.17□□□□□ -1.42
VPS53-206ENST00000570359 DNAH2Q9P225 4427 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 TNP2Q05952 138 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 Q8NBF4 154 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 A0A087WSZ3 146 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 IGLV9-49A0A0B4J1Y8 123 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 SNURFQ9Y675 71 aa6.16□□□□□ -1.42
VPS53-206ENST00000570359 IGLV5-52A0A0A0MRZ9 124 aa6.15□□□□□ -1.42
VPS53-206ENST00000570359 BRK1Q8WUW1 75 aa6.15□□□□□ -1.42
VPS53-206ENST00000570359 ANAPC11Q9NYG5 84 aa6.15□□□□□ -1.42
VPS53-206ENST00000570359 FRAS1Q86XX4 4008 aa6.15□□□□□ -1.43
VPS53-206ENST00000570359 C1orf134Q5TEV5 83 aa6.15□□□□□ -1.43
VPS53-206ENST00000570359 LINC00474Q9P2X8 69 aa6.14□□□□□ -1.43
VPS53-206ENST00000570359 HECTD4Q9Y4D8 3996 aa6.14□□□□□ -1.43
VPS53-206ENST00000570359 IGKV4-1P06312 121 aa6.14□□□□□ -1.43
VPS53-206ENST00000570359 SPACA4Q8TDM5 124 aa6.14□□□□□ -1.43
VPS53-206ENST00000570359 RPL37AP61513 92 aaKnown RBP6.12□□□□□ -1.43
VPS53-206ENST00000570359 K7EQZ3 153 aa6.12□□□□□ -1.43
VPS53-206ENST00000570359 Q6ZR54 194 aa6.11□□□□□ -1.43
VPS53-206ENST00000570359 TMEM254Q8TBM7 123 aa6.11□□□□□ -1.43
VPS53-206ENST00000570359 FAM30AQ9NZY2 134 aa6.11□□□□□ -1.43
VPS53-206ENST00000570359 DNAH6Q9C0G6 4158 aa6.1□□□□□ -1.43
VPS53-206ENST00000570359 PSORS1C2Q9UIG4 136 aa6.1□□□□□ -1.43
VPS53-206ENST00000570359 PRR15Q8IV56 129 aa6.1□□□□□ -1.43
VPS53-206ENST00000570359 WFDC13Q8IUB5 93 aa6.08□□□□□ -1.44
VPS53-206ENST00000570359 A0A0U1RQV1 116 aa6.08□□□□□ -1.44
VPS53-206ENST00000570359 KRTAP10-2P60368 255 aa6.08□□□□□ -1.44
VPS53-206ENST00000570359 DSCR10P59022 87 aa6.07□□□□□ -1.44
VPS53-206ENST00000570359 SPRR4Q96PI1 79 aa6.07□□□□□ -1.44
VPS53-206ENST00000570359 FAM229BQ4G0N7 80 aa6.07□□□□□ -1.44
VPS53-206ENST00000570359 HYDINQ4G0P3 5121 aa6.07□□□□□ -1.44
VPS53-206ENST00000570359 MOBPQ13875 183 aa6.05□□□□□ -1.44
VPS53-206ENST00000570359 OCR1Q9BZK8 76 aa6.05□□□□□ -1.44
VPS53-206ENST00000570359 MPLKIPQ8TAP9 179 aa6.04□□□□□ -1.44
VPS53-206ENST00000570359 PMAIP1Q13794 54 aa6.04□□□□□ -1.44
VPS53-206ENST00000570359 Q1T7F1 81 aa6.04□□□□□ -1.44
VPS53-206ENST00000570359 WWC2-AS2Q96NR7 200 aa6.04□□□□□ -1.44
VPS53-206ENST00000570359 KRTAP13-1Q8IUC0 172 aa6.03□□□□□ -1.44
VPS53-206ENST00000570359 DNAH8Q96JB1 4490 aa6.03□□□□□ -1.44
VPS53-206ENST00000570359 DNAH17Q9UFH2 4485 aa6.03□□□□□ -1.44
VPS53-206ENST00000570359 H0Y9J4 135 aa6.03□□□□□ -1.44
VPS53-206ENST00000570359 DNAH11Q96DT5 4516 aa6.01□□□□□ -1.45
VPS53-206ENST00000570359 hDV103S1A0JD37 113 aa6.01□□□□□ -1.45
VPS53-206ENST00000570359 LCE6AA0A183 80 aa6.01□□□□□ -1.45
VPS53-206ENST00000570359 CIRBP-AS1Q8TBR5 109 aa6.01□□□□□ -1.45
VPS53-206ENST00000570359 PLAC8Q9NZF1 115 aa6.01□□□□□ -1.45
VPS53-206ENST00000570359 IGLV8-61A0A075B6I0 122 aa6□□□□□ -1.45
VPS53-206ENST00000570359 HCG22E2RYF7 251 aa6□□□□□ -1.45
VPS53-206ENST00000570359 SPRR1BP22528 89 aa5.99□□□□□ -1.45
VPS53-206ENST00000570359 ZNF861PO60384 105 aa5.99□□□□□ -1.45
VPS53-206ENST00000570359 SPINK6Q6UWN8 80 aa5.98□□□□□ -1.45
VPS53-206ENST00000570359 KRTAP10-1P60331 282 aa5.98□□□□□ -1.45
VPS53-206ENST00000570359 A0A1B0GW54 56 aa5.97□□□□□ -1.45
VPS53-206ENST00000570359 DNAH5Q8TE73 4624 aa5.97□□□□□ -1.45
VPS53-206ENST00000570359 CD164Q04900 197 aa5.96□□□□□ -1.45
VPS53-206ENST00000570359 IGLV7-43P04211 117 aa5.96□□□□□ -1.46
VPS53-206ENST00000570359 PRR4Q16378 134 aa5.95□□□□□ -1.46
VPS53-206ENST00000570359 ZNF706Q9Y5V0 76 aaPredicted RBP5.95□□□□□ -1.46
VPS53-206ENST00000570359 CASC2Q6XLA1 102 aa5.94□□□□□ -1.46
VPS53-206ENST00000570359 CYP4F30PQ9H0H9 118 aa5.94□□□□□ -1.46
VPS53-206ENST00000570359 ZCCHC13Q8WW36 166 aaKnown RBP5.94□□□□□ -1.46
VPS53-206ENST00000570359 IGHV6-1A0A0B4J1U7 121 aa5.93□□□□□ -1.46
VPS53-206ENST00000570359 LINC00472Q9H8W2 130 aa5.93□□□□□ -1.46
VPS53-206ENST00000570359 C1orf64Q8NEQ6 169 aa5.93□□□□□ -1.46
VPS53-206ENST00000570359 PKHD1P08F94 4074 aa5.92□□□□□ -1.46
VPS53-206ENST00000570359 ALMS1Q8TCU4 4167 aa5.92□□□□□ -1.46
VPS53-206ENST00000570359 A8MWP4 228 aa5.92□□□□□ -1.46
VPS53-206ENST00000570359 LINC00483Q53H64 154 aa5.91□□□□□ -1.46
VPS53-206ENST00000570359 NDUFS5O43920 106 aa5.91□□□□□ -1.46
VPS53-206ENST00000570359 FAT2Q9NYQ8 4349 aa5.9□□□□□ -1.46
VPS53-206ENST00000570359 TRAV22A0A0B4J277 110 aa5.9□□□□□ -1.47
VPS53-206ENST00000570359 LRP1BQ9NZR2 4599 aa5.9□□□□□ -1.47
VPS53-206ENST00000570359 NDUFB1O75438 58 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms