RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FAM19A1Q7Z5A9 133 aa5.01□□□□□ -1.61
VPS39-213ENST00000570062 VPS25Q9BRG1 176 aa5.01□□□□□ -1.61
VPS39-213ENST00000570062 HECTD4Q9Y4D8 3996 aa5□□□□□ -1.61
VPS39-213ENST00000570062 DNAH2Q9P225 4427 aa5□□□□□ -1.61
VPS39-213ENST00000570062 CHTF8P0CG12 524 aa5□□□□□ -1.61
VPS39-213ENST00000570062 PHF5AQ7RTV0 110 aaKnown RBP5□□□□□ -1.61
VPS39-213ENST00000570062 DNAH17Q9UFH2 4485 aa5□□□□□ -1.61
VPS39-213ENST00000570062 IGLV5-48A0A075B6I7 105 aa4.99□□□□□ -1.61
VPS39-213ENST00000570062 LOC110117498A0A087WWA1 95 aa4.99□□□□□ -1.61
VPS39-213ENST00000570062 UBE2AP49459 152 aa4.99□□□□□ -1.61
VPS39-213ENST00000570062 NDUFV3P56181 108 aaKnown RBP4.99□□□□□ -1.61
VPS39-213ENST00000570062 CCKP06307 115 aa4.98□□□□□ -1.61
VPS39-213ENST00000570062 ZNF706Q9Y5V0 76 aaPredicted RBP4.98□□□□□ -1.61
VPS39-213ENST00000570062 KIAA1109Q2LD37 5005 aa4.97□□□□□ -1.61
VPS39-213ENST00000570062 F8WEM9 126 aa4.97□□□□□ -1.61
VPS39-213ENST00000570062 Q9BRP9 147 aa4.97□□□□□ -1.61
VPS39-213ENST00000570062 Q6ZSA8 131 aa4.96□□□□□ -1.62
VPS39-213ENST00000570062 SMCR5Q8TEV8 140 aa4.96□□□□□ -1.62
VPS39-213ENST00000570062 SIGMAR1Q99720 223 aa4.96□□□□□ -1.62
VPS39-213ENST00000570062 CDIP1Q9H305 208 aa4.96□□□□□ -1.62
VPS39-213ENST00000570062 SPRR1BP22528 89 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 GAGE2AQ6NT46 116 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 Q8N377 158 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 DEFB105AQ8NG35 78 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 HIGD2AQ9BW72 106 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 C14orf132Q9NPU4 83 aa4.95□□□□□ -1.62
VPS39-213ENST00000570062 TRBV7-4A0A0J9YYF1 115 aa4.94□□□□□ -1.62
VPS39-213ENST00000570062 PANO1I0J062 215 aa4.94□□□□□ -1.62
VPS39-213ENST00000570062 RPL37AP61513 92 aaKnown RBP4.94□□□□□ -1.62
VPS39-213ENST00000570062 LINC00643Q86TS7 51 aa4.94□□□□□ -1.62
VPS39-213ENST00000570062 KMT2AQ03164 3969 aa4.94□□□□□ -1.62
VPS39-213ENST00000570062 ZNF861PO60384 105 aa4.93□□□□□ -1.62
VPS39-213ENST00000570062 FUSP35637 526 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS39-213ENST00000570062 LINC01547P58512 204 aaPredicted RBP4.93□□□□□ -1.62
VPS39-213ENST00000570062 Q6JHZ5 121 aa4.93□□□□□ -1.62
VPS39-213ENST00000570062 Q6ZQT0 140 aa4.93□□□□□ -1.62
VPS39-213ENST00000570062 KRTAP13-1Q8IUC0 172 aa4.93□□□□□ -1.62
VPS39-213ENST00000570062 UBL5Q9BZL1 73 aa4.93□□□□□ -1.62
VPS39-213ENST00000570062 PRLHP81277 87 aa4.92□□□□□ -1.62
VPS39-213ENST00000570062 C1orf137Q5JT78 98 aa4.92□□□□□ -1.62
VPS39-213ENST00000570062 CIRBP-AS1Q8TBR5 109 aa4.92□□□□□ -1.62
VPS39-213ENST00000570062 IMUPQ9GZP8 106 aa4.92□□□□□ -1.62
VPS39-213ENST00000570062 PSORS1C2Q9UIG4 136 aa4.92□□□□□ -1.62
VPS39-213ENST00000570062 HERC1Q15751 4861 aa4.91□□□□□ -1.62
VPS39-213ENST00000570062 IGLV8-61A0A075B6I0 122 aa4.91□□□□□ -1.62
VPS39-213ENST00000570062 ERC2-IT1O76042 136 aa4.91□□□□□ -1.62
VPS39-213ENST00000570062 ATP5EP2Q5VTU8 51 aa4.91□□□□□ -1.62
VPS39-213ENST00000570062 IGLV7-43P04211 117 aa4.9□□□□□ -1.63
VPS39-213ENST00000570062 SCGB1A1P11684 91 aa4.9□□□□□ -1.63
VPS39-213ENST00000570062 KRTAP10-1P60331 282 aa4.9□□□□□ -1.63
VPS39-213ENST00000570062 ST20-AS1Q8NBB2 130 aa4.9□□□□□ -1.63
VPS39-213ENST00000570062 DNAH11Q96DT5 4516 aa4.89□□□□□ -1.63
VPS39-213ENST00000570062 LINC00483Q53H64 154 aa4.89□□□□□ -1.63
VPS39-213ENST00000570062 SCXQ7RTU7 201 aa4.89□□□□□ -1.63
VPS39-213ENST00000570062 KRTAP11-1Q8IUC1 163 aa4.89□□□□□ -1.63
VPS39-213ENST00000570062 Q6Q795 121 aa4.88□□□□□ -1.63
VPS39-213ENST00000570062 SMIM29Q86T20 159 aa4.88□□□□□ -1.63
VPS39-213ENST00000570062 SPRR4Q96PI1 79 aa4.88□□□□□ -1.63
VPS39-213ENST00000570062 DNAH8Q96JB1 4490 aa4.87□□□□□ -1.63
VPS39-213ENST00000570062 LINC00846Q9NV44 126 aa4.87□□□□□ -1.63
VPS39-213ENST00000570062 FAM30AQ9NZY2 134 aa4.87□□□□□ -1.63
VPS39-213ENST00000570062 TRBV7-7A0A0K0K1E9 115 aa4.86□□□□□ -1.63
VPS39-213ENST00000570062 A0A1B0GVY2 172 aa4.86□□□□□ -1.63
VPS39-213ENST00000570062 CRYGAP11844 174 aa4.86□□□□□ -1.63
VPS39-213ENST00000570062 Q8NBF4 154 aa4.86□□□□□ -1.63
VPS39-213ENST00000570062 FAT2Q9NYQ8 4349 aa4.86□□□□□ -1.63
VPS39-213ENST00000570062 DNAH5Q8TE73 4624 aa4.85□□□□□ -1.63
VPS39-213ENST00000570062 A0A1B0GV72 72 aa4.85□□□□□ -1.63
VPS39-213ENST00000570062 XGP55808 180 aa4.85□□□□□ -1.63
VPS39-213ENST00000570062 CXCL6P80162 114 aa4.85□□□□□ -1.63
VPS39-213ENST00000570062 NREPQ16612 68 aa4.85□□□□□ -1.63
VPS39-213ENST00000570062 FAM229BQ4G0N7 80 aa4.84□□□□□ -1.63
VPS39-213ENST00000570062 SSBP3-AS1Q7Z2R9 100 aa4.84□□□□□ -1.63
VPS39-213ENST00000570062 Q6ZVQ6 151 aa4.83□□□□□ -1.64
VPS39-213ENST00000570062 C3orf22Q8N5N4 141 aa4.83□□□□□ -1.64
VPS39-213ENST00000570062 MT-ATP8P03928 68 aa4.82□□□□□ -1.64
VPS39-213ENST00000570062 IGFL1Q6UW32 110 aa4.82□□□□□ -1.64
VPS39-213ENST00000570062 SPINK6Q6UWN8 80 aa4.82□□□□□ -1.64
VPS39-213ENST00000570062 SS18L2Q9UHA2 77 aa4.82□□□□□ -1.64
VPS39-213ENST00000570062 A0A1W2PNM2 257 aa4.81□□□□□ -1.64
VPS39-213ENST00000570062 HAMPP81172 84 aa4.81□□□□□ -1.64
VPS39-213ENST00000570062 CD164Q04900 197 aa4.81□□□□□ -1.64
VPS39-213ENST00000570062 C9orf153Q5TBE3 101 aa4.81□□□□□ -1.64
VPS39-213ENST00000570062 PKD1P98161 4303 aa4.8□□□□□ -1.64
VPS39-213ENST00000570062 J3KT08 172 aa4.8□□□□□ -1.64
VPS39-213ENST00000570062 BPY2O14599 106 aa4.8□□□□□ -1.64
VPS39-213ENST00000570062 KRTAP15-1Q3LI76 137 aa4.79□□□□□ -1.64
VPS39-213ENST00000570062 IGLV9-49A0A0B4J1Y8 123 aa4.78□□□□□ -1.64
VPS39-213ENST00000570062 CDK2AP2O75956 126 aa4.77□□□□□ -1.65
VPS39-213ENST00000570062 HIST1H4AP62805 103 aaKnown RBP4.77□□□□□ -1.65
VPS39-213ENST00000570062 DYNC1H1Q14204 4646 aaKnown RBP4.76□□□□□ -1.65
VPS39-213ENST00000570062 LRP1BQ9NZR2 4599 aa4.76□□□□□ -1.65
VPS39-213ENST00000570062 A0A087WSZ3 146 aa4.76□□□□□ -1.65
VPS39-213ENST00000570062 IGKV3D-7A0A0C4DH55 119 aa4.76□□□□□ -1.65
VPS39-213ENST00000570062 MOBPQ13875 183 aa4.76□□□□□ -1.65
VPS39-213ENST00000570062 ATOX1O00244 68 aa4.75□□□□□ -1.65
VPS39-213ENST00000570062 SMIM20Q8N5G0 67 aa4.75□□□□□ -1.65
VPS39-213ENST00000570062 NDUFB1O75438 58 aa4.74□□□□□ -1.65
VPS39-213ENST00000570062 SPAG11AQ6PDA7 123 aa4.74□□□□□ -1.65
VPS39-213ENST00000570062 PCP4P48539 62 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms