RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 TRAV13-2A0A0B4J235 113 aa8.16□□□□□ -1.1
CDH3-205ENST00000566808 HSPB8Q9UJY1 196 aa8.15□□□□□ -1.1
CDH3-205ENST00000566808 KRTAP16-1A8MUX0 517 aa8.14□□□□□ -1.11
CDH3-205ENST00000566808 SERF1AO75920 110 aa8.13□□□□□ -1.11
CDH3-205ENST00000566808 A6NDN8 102 aa8.12□□□□□ -1.11
CDH3-205ENST00000566808 SS18L2Q9UHA2 77 aa8.12□□□□□ -1.11
CDH3-205ENST00000566808 Q6ZVH6 145 aa8.11□□□□□ -1.11
CDH3-205ENST00000566808 SLC7A5P1Q8MH63 180 aa8.11□□□□□ -1.11
CDH3-205ENST00000566808 OCIAD2Q56VL3 154 aa8.1□□□□□ -1.11
CDH3-205ENST00000566808 A8MWP4 228 aa8.09□□□□□ -1.11
CDH3-205ENST00000566808 FABP4P15090 132 aa8.08□□□□□ -1.12
CDH3-205ENST00000566808 LINC00310P59036 64 aa8.08□□□□□ -1.12
CDH3-205ENST00000566808 Q6ZQY7 126 aa8.08□□□□□ -1.12
CDH3-205ENST00000566808 MTURNQ8N3F0 131 aa8.08□□□□□ -1.12
CDH3-205ENST00000566808 Q8N9P0 234 aaPredicted RBP8.08□□□□□ -1.12
CDH3-205ENST00000566808 COPS9Q8WXC6 57 aa8.08□□□□□ -1.12
CDH3-205ENST00000566808 DSCR10P59022 87 aa8.07□□□□□ -1.12
CDH3-205ENST00000566808 NOTCH2NLQ7Z3S9 236 aa8.07□□□□□ -1.12
CDH3-205ENST00000566808 SMIM11BQ8TCY0 68 aa8.05□□□□□ -1.12
CDH3-205ENST00000566808 LINC00575Q6W349 94 aa8.03□□□□□ -1.12
CDH3-205ENST00000566808 SCGB1D1O95968 90 aa8.02□□□□□ -1.13
CDH3-205ENST00000566808 IFITM1P13164 125 aa8.02□□□□□ -1.13
CDH3-205ENST00000566808 YPEL4Q96NS1 127 aa8.02□□□□□ -1.13
CDH3-205ENST00000566808 TTTY13Q9BZ97 58 aa8.02□□□□□ -1.13
CDH3-205ENST00000566808 VAMP3Q15836 100 aa8.01□□□□□ -1.13
CDH3-205ENST00000566808 hADV29S1A0JD25 119 aa8□□□□□ -1.13
CDH3-205ENST00000566808 ANKRD39Q53RE8 183 aa8□□□□□ -1.13
CDH3-205ENST00000566808 H3BUT2 72 aa7.99□□□□□ -1.13
CDH3-205ENST00000566808 PPDPFLQ8WWR9 84 aa7.99□□□□□ -1.13
CDH3-205ENST00000566808 MDN1Q9NU22 5596 aa7.99□□□□□ -1.13
CDH3-205ENST00000566808 SCGB1D4Q6XE38 83 aa7.98□□□□□ -1.13
CDH3-205ENST00000566808 SIGMAR1Q99720 223 aa7.98□□□□□ -1.13
CDH3-205ENST00000566808 SNAPINO95295 136 aa7.97□□□□□ -1.13
CDH3-205ENST00000566808 APOC3P02656 99 aa7.96□□□□□ -1.14
CDH3-205ENST00000566808 LINC00313P59037 77 aa7.96□□□□□ -1.14
CDH3-205ENST00000566808 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.95□□□□□ -1.14
CDH3-205ENST00000566808 TEN1Q86WV5 123 aa7.95□□□□□ -1.14
CDH3-205ENST00000566808 SVBPQ8N300 66 aa7.95□□□□□ -1.14
CDH3-205ENST00000566808 SNHG12Q9BXW3 62 aa7.95□□□□□ -1.14
CDH3-205ENST00000566808 A0A087WSZ3 146 aa7.94□□□□□ -1.14
CDH3-205ENST00000566808 COLCA2A8K830 154 aa7.94□□□□□ -1.14
CDH3-205ENST00000566808 KMT2DO14686 5537 aa7.94□□□□□ -1.14
CDH3-205ENST00000566808 SYS1-DBNDD2H3BUS1 97 aa7.93□□□□□ -1.14
CDH3-205ENST00000566808 TRGC2P03986 189 aa7.93□□□□□ -1.14
CDH3-205ENST00000566808 MUSTN1Q8IVN3 82 aa7.93□□□□□ -1.14
CDH3-205ENST00000566808 KRTAP5-9P26371 169 aa7.92□□□□□ -1.14
CDH3-205ENST00000566808 NDUFA5Q16718 116 aa7.91□□□□□ -1.14
CDH3-205ENST00000566808 LINC01545Q5VT33 79 aa7.91□□□□□ -1.14
CDH3-205ENST00000566808 A6NN06 94 aa7.9□□□□□ -1.14
CDH3-205ENST00000566808 KRTAP2-3P0C7H8 128 aa7.86□□□□□ -1.15
CDH3-205ENST00000566808 KRTAP2-4Q9BYR9 128 aa7.86□□□□□ -1.15
CDH3-205ENST00000566808 GHRHP01286 108 aa7.84□□□□□ -1.15
CDH3-205ENST00000566808 PET117Q6UWS5 81 aa7.84□□□□□ -1.15
CDH3-205ENST00000566808 IGKV4-1P06312 121 aa7.83□□□□□ -1.16
CDH3-205ENST00000566808 SPINK7P58062 85 aa7.83□□□□□ -1.16
CDH3-205ENST00000566808 S100A1P23297 94 aa7.81□□□□□ -1.16
CDH3-205ENST00000566808 WFDC13Q8IUB5 93 aa7.8□□□□□ -1.16
CDH3-205ENST00000566808 BVES-AS1Q5T3Y7 98 aa7.79□□□□□ -1.16
CDH3-205ENST00000566808 ZCCHC13Q8WW36 166 aaKnown RBP7.79□□□□□ -1.16
CDH3-205ENST00000566808 C12orf57Q99622 126 aa7.79□□□□□ -1.16
CDH3-205ENST00000566808 NDUFV3P56181 108 aaKnown RBP7.77□□□□□ -1.17
CDH3-205ENST00000566808 IGHV6-1A0A0B4J1U7 121 aa7.76□□□□□ -1.17
CDH3-205ENST00000566808 FAM218AQ96MZ4 157 aa7.76□□□□□ -1.17
CDH3-205ENST00000566808 A0A1W2PNM2 257 aa7.75□□□□□ -1.17
CDH3-205ENST00000566808 H3BMG7 143 aa7.72□□□□□ -1.17
CDH3-205ENST00000566808 C3orf79P0CE67 100 aa7.72□□□□□ -1.17
CDH3-205ENST00000566808 C8orf87E5RJ46 101 aa7.7□□□□□ -1.18
CDH3-205ENST00000566808 MT1BP07438 61 aa7.69□□□□□ -1.18
CDH3-205ENST00000566808 SNCGO76070 127 aa7.68□□□□□ -1.18
CDH3-205ENST00000566808 KRTAP10-5P60370 271 aa7.68□□□□□ -1.18
CDH3-205ENST00000566808 DEFB116Q30KQ4 102 aa7.68□□□□□ -1.18
CDH3-205ENST00000566808 Q5VV11 94 aa7.67□□□□□ -1.18
CDH3-205ENST00000566808 RAB37Q96AX2 223 aa7.67□□□□□ -1.18
CDH3-205ENST00000566808 LINC00472Q9H8W2 130 aa7.67□□□□□ -1.18
CDH3-205ENST00000566808 TRBV7-4A0A0J9YYF1 115 aa7.66□□□□□ -1.18
CDH3-205ENST00000566808 KRTDAPP60985 99 aa7.66□□□□□ -1.18
CDH3-205ENST00000566808 A0A1B0GVX0 72 aa7.65□□□□□ -1.18
CDH3-205ENST00000566808 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
CDH3-205ENST00000566808 ATOH7Q8N100 152 aa7.64□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BKO60814 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BJP06899 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BOP23527 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BBP33778 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BDP58876 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BCP62807 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST2H2BEQ16778 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BHQ93079 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BNQ99877 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 HIST1H2BMQ99879 126 aa7.61□□□□□ -1.19
CDH3-205ENST00000566808 FABP2P12104 132 aa7.6□□□□□ -1.19
CDH3-205ENST00000566808 LOC105371267A0A1B0GV96 52 aa7.58□□□□□ -1.2
CDH3-205ENST00000566808 KRTAP19-8Q3LI54 63 aa7.58□□□□□ -1.2
CDH3-205ENST00000566808 ANKRD29Q8N6D5 301 aa7.58□□□□□ -1.2
CDH3-205ENST00000566808 H0YGX0 51 aa7.57□□□□□ -1.2
CDH3-205ENST00000566808 KRTAP2-2Q9BYT5 123 aa7.57□□□□□ -1.2
CDH3-205ENST00000566808 KRTAP2-1Q9BYU5 128 aa7.57□□□□□ -1.2
CDH3-205ENST00000566808 SPRR2EP22531 72 aa7.56□□□□□ -1.2
CDH3-205ENST00000566808 SPRR2BP35325 72 aa7.56□□□□□ -1.2
CDH3-205ENST00000566808 SPRR2AP35326 72 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms