RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 F8W036 122 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 K7EMI3 77 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 LINC00299Q6ZSB3 139 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 PRO2289Q9P1D8 64 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 TRAV23DV6A0A075B6W5 121 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 TRBV10-2A0A0K0K1G8 114 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 A0A1W2PNM2 257 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 IGIPA6NJ69 53 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 K7EN84 100 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 NPYP01303 97 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 RPL23P62829 140 aaKnown RBP2.16□□□□□ -2.06
VPS35-204ENST00000563884 TAL2Q16559 108 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 S100A7L2Q5SY68 101 aa2.16□□□□□ -2.06
VPS35-204ENST00000563884 TEX49A0A1B0GTD5 131 aa2.15□□□□□ -2.07
VPS35-204ENST00000563884 ZNF73O43830 326 aaPredicted RBP2.15□□□□□ -2.07
VPS35-204ENST00000563884 COMMD7Q86VX2 200 aa2.15□□□□□ -2.07
VPS35-204ENST00000563884 ORMDL3Q8N138 153 aa2.15□□□□□ -2.07
VPS35-204ENST00000563884 MAP1LC3AQ9H492 121 aa2.15□□□□□ -2.07
VPS35-204ENST00000563884 LAMTOR2Q9Y2Q5 125 aa2.15□□□□□ -2.07
VPS35-204ENST00000563884 LINC01549A6NIU2 74 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 ZNF815PA8K554 130 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 LINC00587B1AMM8 73 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 ZNF345Q14585 488 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 MAP1LC3CQ9BXW4 147 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 SPRR2GQ9BYE4 73 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 SPANXB1Q9NS25 103 aaPredicted RBP2.14□□□□□ -2.07
VPS35-204ENST00000563884 NAT8BQ9UHF3 227 aa2.14□□□□□ -2.07
VPS35-204ENST00000563884 A0A096LNJ9 63 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 F8WEM9 126 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 LST1O00453 97 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 FAM74A3Q4VXF1 159 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 MEIG1Q5JSS6 88 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 Q8N8P6 123 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 PRELID3AQ96N28 172 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 CST9LQ9H4G1 147 aa2.13□□□□□ -2.07
VPS35-204ENST00000563884 NXT2Q9NPJ8 142 aaKnown RBP2.13□□□□□ -2.07
VPS35-204ENST00000563884 MT4P47944 62 aa2.12□□□□□ -2.07
VPS35-204ENST00000563884 ERASQ7Z444 233 aa2.12□□□□□ -2.07
VPS35-204ENST00000563884 DEFB105AQ8NG35 78 aa2.12□□□□□ -2.07
VPS35-204ENST00000563884 TRBV7-7A0A0K0K1E9 115 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 MIR7-3HGQ8N6C7 128 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 TOMM6Q96B49 74 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 SCGB3A1Q96QR1 104 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 MIEN1Q9BRT3 115 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 OSTCQ9NRP0 149 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 SS18L2Q9UHA2 77 aa2.11□□□□□ -2.07
VPS35-204ENST00000563884 SMIM13P0DJ93 91 aa2.1□□□□□ -2.07
VPS35-204ENST00000563884 Q6JHZ5 121 aa2.1□□□□□ -2.07
VPS35-204ENST00000563884 ZCCHC13Q8WW36 166 aaKnown RBP2.1□□□□□ -2.07
VPS35-204ENST00000563884 IGLC3P0DOY3 106 aa2.09□□□□□ -2.07
VPS35-204ENST00000563884 CEBPGP53567 150 aa2.09□□□□□ -2.07
VPS35-204ENST00000563884 WFDC13Q8IUB5 93 aa2.09□□□□□ -2.07
VPS35-204ENST00000563884 CLEC2BQ92478 149 aa2.09□□□□□ -2.07
VPS35-204ENST00000563884 TMEM250H0YL14 139 aa2.08□□□□□ -2.08
VPS35-204ENST00000563884 NDUFC2O95298 119 aa2.08□□□□□ -2.08
VPS35-204ENST00000563884 NMUP48645 174 aa2.08□□□□□ -2.08
VPS35-204ENST00000563884 RBM3P98179 157 aaKnown RBP2.08□□□□□ -2.08
VPS35-204ENST00000563884 H1FX-AS1Q4G0G2 97 aa2.08□□□□□ -2.08
VPS35-204ENST00000563884 IGLV5-48A0A075B6I7 105 aa2.07□□□□□ -2.08
VPS35-204ENST00000563884 ZNF22P17026 224 aaPredicted RBP2.07□□□□□ -2.08
VPS35-204ENST00000563884 SPINK7P58062 85 aa2.07□□□□□ -2.08
VPS35-204ENST00000563884 LINC00313P59037 77 aa2.07□□□□□ -2.08
VPS35-204ENST00000563884 MRPL54Q6P161 138 aaKnown RBP2.07□□□□□ -2.08
VPS35-204ENST00000563884 V9GYV3 84 aa2.07□□□□□ -2.08
VPS35-204ENST00000563884 ARPC5O15511 151 aa2.06□□□□□ -2.08
VPS35-204ENST00000563884 COX7BP24311 80 aa2.06□□□□□ -2.08
VPS35-204ENST00000563884 ELOF1P60002 83 aaKnown RBP2.06□□□□□ -2.08
VPS35-204ENST00000563884 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
VPS35-204ENST00000563884 TMEM170BQ5T4T1 132 aa2.06□□□□□ -2.08
VPS35-204ENST00000563884 KANTRA0A1W2PQU2 76 aa2.05□□□□□ -2.08
VPS35-204ENST00000563884 SMIM27A0A1W2PRY6 76 aa2.05□□□□□ -2.08
VPS35-204ENST00000563884 ATP5L2Q7Z4Y8 100 aa2.05□□□□□ -2.08
VPS35-204ENST00000563884 HIST1H4GQ99525 98 aa2.05□□□□□ -2.08
VPS35-204ENST00000563884 SMIM7Q9BQ49 75 aa2.05□□□□□ -2.08
VPS35-204ENST00000563884 TRAV13-2A0A0B4J235 113 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 MYMXA0A1B0GTQ4 84 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 A0A1B0GXF2 115 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 IFITM2Q01629 132 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 RHEBQ15382 184 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 PRR15Q8IV56 129 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 DSCR8Q96T75 97 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 SIGMAR1Q99720 223 aa2.04□□□□□ -2.08
VPS35-204ENST00000563884 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
VPS35-204ENST00000563884 NHP2Q9NX24 153 aaKnown RBP2.04□□□□□ -2.08
VPS35-204ENST00000563884 MUC5ACP98088 5654 aa2.03□□□□□ -2.08
VPS35-204ENST00000563884 COLCA2A8K830 154 aa2.03□□□□□ -2.08
VPS35-204ENST00000563884 C3orf79P0CE67 100 aa2.03□□□□□ -2.08
VPS35-204ENST00000563884 ADCYAP1P18509 176 aa2.03□□□□□ -2.08
VPS35-204ENST00000563884 TRBV7-6A0A0J9YX20 115 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 KLKP1Q107X0 134 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 DEFB116Q30KQ4 102 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 C5orf47Q569G3 176 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 SOSTDC1Q6X4U4 206 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 OR13C6PQ8NH95 151 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 S100ZQ8WXG8 99 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 CRIPTQ9P021 101 aa2.02□□□□□ -2.09
VPS35-204ENST00000563884 HBDP02042 147 aa2.01□□□□□ -2.09
VPS35-204ENST00000563884 SPANXDQ9BXN6 97 aa2.01□□□□□ -2.09
VPS35-204ENST00000563884 C11orf86A6NJI1 115 aa2□□□□□ -2.09
VPS35-204ENST00000563884 CAMK2N1Q7Z7J9 78 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms