RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PRR26Q8N8Z3 221 aa7.3□□□□□ -1.24
CUX1-218ENST00000560541 CSMD3Q7Z407 3707 aa7.28□□□□□ -1.24
CUX1-218ENST00000560541 Q6ZRX8 168 aa7.28□□□□□ -1.24
CUX1-218ENST00000560541 LYSTQ99698 3801 aa7.28□□□□□ -1.24
CUX1-218ENST00000560541 ETDCA0A1B0GVM5 59 aa7.28□□□□□ -1.24
CUX1-218ENST00000560541 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.27□□□□□ -1.25
CUX1-218ENST00000560541 A0A1W2PNM2 257 aa7.27□□□□□ -1.25
CUX1-218ENST00000560541 Q8N9P0 234 aaPredicted RBP7.27□□□□□ -1.25
CUX1-218ENST00000560541 KRTAP7-1Q8IUC3 87 aa7.26□□□□□ -1.25
CUX1-218ENST00000560541 DNAH10OSP0CZ25 163 aa7.26□□□□□ -1.25
CUX1-218ENST00000560541 IGLV5-48A0A075B6I7 105 aa7.26□□□□□ -1.25
CUX1-218ENST00000560541 C1orf137Q5JT78 98 aa7.26□□□□□ -1.25
CUX1-218ENST00000560541 IGLV1-50A0A075B6I6 118 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 A0A0G2JQZ4 141 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 A0A1W2PNN7 141 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 DNAH10Q8IVF4 4471 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 DEFB116Q30KQ4 102 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 DHRS4-AS1Q9P1J3 65 aa7.25□□□□□ -1.25
CUX1-218ENST00000560541 DNAH1Q9P2D7 4330 aa7.24□□□□□ -1.25
CUX1-218ENST00000560541 KRTAP4-16G5E9R7 235 aaPredicted RBP7.24□□□□□ -1.25
CUX1-218ENST00000560541 MOBPQ13875 183 aa7.24□□□□□ -1.25
CUX1-218ENST00000560541 SRRM2Q9UQ35 2752 aaKnown RBP7.23□□□□□ -1.25
CUX1-218ENST00000560541 B9D2Q9BPU9 175 aa7.23□□□□□ -1.25
CUX1-218ENST00000560541 TLX1NBP0CAT3 122 aa7.22□□□□□ -1.25
CUX1-218ENST00000560541 KRTAP24-1Q3LI83 254 aa7.22□□□□□ -1.25
CUX1-218ENST00000560541 ADM2Q7Z4H4 148 aa7.22□□□□□ -1.25
CUX1-218ENST00000560541 LIMD2Q9BT23 127 aa7.22□□□□□ -1.25
CUX1-218ENST00000560541 ZCCHC13Q8WW36 166 aaKnown RBP7.22□□□□□ -1.25
CUX1-218ENST00000560541 CYP4F30PQ9H0H9 118 aa7.22□□□□□ -1.25
CUX1-218ENST00000560541 TNP2Q05952 138 aa7.21□□□□□ -1.26
CUX1-218ENST00000560541 STAB2Q8WWQ8 2551 aa7.21□□□□□ -1.26
CUX1-218ENST00000560541 MGAM2Q2M2H8 2515 aa7.21□□□□□ -1.26
CUX1-218ENST00000560541 SPRR1AP35321 89 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 Q8NBF4 154 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 DNAH3Q8TD57 4116 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 LINC00208Q96KT6 92 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 LINC00313P59037 77 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 PLA2G2DQ9UNK4 145 aa7.2□□□□□ -1.26
CUX1-218ENST00000560541 IGKV2-24A0A0C4DH68 120 aa7.19□□□□□ -1.26
CUX1-218ENST00000560541 HUWE1Q7Z6Z7 4374 aaKnown RBP7.19□□□□□ -1.26
CUX1-218ENST00000560541 K7EQZ3 153 aa7.18□□□□□ -1.26
CUX1-218ENST00000560541 TENM2Q9NT68 2774 aa7.18□□□□□ -1.26
CUX1-218ENST00000560541 PRLHP81277 87 aa7.18□□□□□ -1.26
CUX1-218ENST00000560541 IGLV5-37A0A075B6J1 123 aa7.17□□□□□ -1.26
CUX1-218ENST00000560541 DSCR10P59022 87 aa7.17□□□□□ -1.26
CUX1-218ENST00000560541 CDC42SE1Q9NRR8 79 aa7.17□□□□□ -1.26
CUX1-218ENST00000560541 REG3GQ6UW15 175 aa7.17□□□□□ -1.26
CUX1-218ENST00000560541 LINC00476Q8WZB0 136 aa7.16□□□□□ -1.26
CUX1-218ENST00000560541 LINC01554Q52M75 96 aa7.16□□□□□ -1.26
CUX1-218ENST00000560541 Q75L30 129 aa7.16□□□□□ -1.26
CUX1-218ENST00000560541 SPRR4Q96PI1 79 aa7.15□□□□□ -1.27
CUX1-218ENST00000560541 LCE6AA0A183 80 aa7.14□□□□□ -1.27
CUX1-218ENST00000560541 DNAH9Q9NYC9 4486 aa7.14□□□□□ -1.27
CUX1-218ENST00000560541 A0A096LNI7 61 aa7.14□□□□□ -1.27
CUX1-218ENST00000560541 WFDC13Q8IUB5 93 aa7.14□□□□□ -1.27
CUX1-218ENST00000560541 SPINK7P58062 85 aa7.13□□□□□ -1.27
CUX1-218ENST00000560541 SPAG11AQ6PDA7 123 aa7.13□□□□□ -1.27
CUX1-218ENST00000560541 LOC101927531A0A1B0GV80 90 aa7.12□□□□□ -1.27
CUX1-218ENST00000560541 IGFL1Q6UW32 110 aa7.12□□□□□ -1.27
CUX1-218ENST00000560541 KRTAP1-5Q9BYS1 174 aa7.12□□□□□ -1.27
CUX1-218ENST00000560541 COL7A1Q02388 2944 aa7.11□□□□□ -1.27
CUX1-218ENST00000560541 A0A087WSZ3 146 aa7.11□□□□□ -1.27
CUX1-218ENST00000560541 A0A1B0GW54 56 aa7.11□□□□□ -1.27
CUX1-218ENST00000560541 MP68P56378 58 aa7.11□□□□□ -1.27
CUX1-218ENST00000560541 NDUFB1O75438 58 aa7.1□□□□□ -1.27
CUX1-218ENST00000560541 CHTF8P0CG12 524 aa7.1□□□□□ -1.27
CUX1-218ENST00000560541 RPL37AP61513 92 aaKnown RBP7.09□□□□□ -1.27
CUX1-218ENST00000560541 COA5Q86WW8 74 aa7.08□□□□□ -1.28
CUX1-218ENST00000560541 KRTAP11-1Q8IUC1 163 aa7.08□□□□□ -1.28
CUX1-218ENST00000560541 DNAH7Q8WXX0 4024 aa7.07□□□□□ -1.28
CUX1-218ENST00000560541 K7EIL1 84 aa7.07□□□□□ -1.28
CUX1-218ENST00000560541 CASC2Q6XLA1 102 aa7.05□□□□□ -1.28
CUX1-218ENST00000560541 UBE2DNLQ8IWF7 75 aa7.03□□□□□ -1.28
CUX1-218ENST00000560541 H0Y9P7 68 aa7.02□□□□□ -1.29
CUX1-218ENST00000560541 ZNF706Q9Y5V0 76 aaPredicted RBP7.02□□□□□ -1.29
CUX1-218ENST00000560541 CNBPP62633 177 aaKnown RBP7.01□□□□□ -1.29
CUX1-218ENST00000560541 PCOTHQ58A44 107 aa7.01□□□□□ -1.29
CUX1-218ENST00000560541 RETNLBQ9BQ08 111 aa7□□□□□ -1.29
CUX1-218ENST00000560541 IGLV8-61A0A075B6I0 122 aa6.98□□□□□ -1.29
CUX1-218ENST00000560541 PLECQ15149 4684 aaKnown RBP6.97□□□□□ -1.29
CUX1-218ENST00000560541 PANO1I0J062 215 aa6.97□□□□□ -1.29
CUX1-218ENST00000560541 SPANXA2-OT1Q8N9U9 137 aa6.96□□□□□ -1.3
CUX1-218ENST00000560541 KRTAP29-1A8MX34 341 aaPredicted RBP6.95□□□□□ -1.3
CUX1-218ENST00000560541 LINC01558Q9Y6Z2 57 aa6.95□□□□□ -1.3
CUX1-218ENST00000560541 H0Y9J4 135 aa6.95□□□□□ -1.3
CUX1-218ENST00000560541 CSAG1Q6PB30 78 aa6.93□□□□□ -1.3
CUX1-218ENST00000560541 LINC00472Q9H8W2 130 aa6.93□□□□□ -1.3
CUX1-218ENST00000560541 APLNQ9ULZ1 77 aa6.93□□□□□ -1.3
CUX1-218ENST00000560541 A8MWP4 228 aa6.92□□□□□ -1.3
CUX1-218ENST00000560541 IGLV9-49A0A0B4J1Y8 123 aa6.92□□□□□ -1.3
CUX1-218ENST00000560541 C14orf177Q52M58 125 aa6.92□□□□□ -1.3
CUX1-218ENST00000560541 C9orf163Q8N9P6 203 aa6.92□□□□□ -1.3
CUX1-218ENST00000560541 PLA2G1BP04054 148 aaKnown RBP6.91□□□□□ -1.3
CUX1-218ENST00000560541 SPRR1BP22528 89 aa6.91□□□□□ -1.3
CUX1-218ENST00000560541 FRAS1Q86XX4 4008 aa6.9□□□□□ -1.3
CUX1-218ENST00000560541 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.87□□□□□ -1.31
CUX1-218ENST00000560541 PLAC8Q9NZF1 115 aa6.87□□□□□ -1.31
CUX1-218ENST00000560541 DYNC2H1Q8NCM8 4307 aaKnown RBP6.86□□□□□ -1.31
CUX1-218ENST00000560541 NBDYA0A0U1RRE5 68 aa6.86□□□□□ -1.31
CUX1-218ENST00000560541 MMP24-AS1A0A0U1RRL7 71 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms