RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZNF73O43830 326 aaPredicted RBP5.59□□□□□ -1.51
LDLR-211ENST00000560173 BAALC-AS2P0C853 105 aa5.59□□□□□ -1.51
LDLR-211ENST00000560173 SPRR1AP35321 89 aa5.59□□□□□ -1.51
LDLR-211ENST00000560173 C6orf99Q4VX62 202 aa5.59□□□□□ -1.51
LDLR-211ENST00000560173 MTURNQ8N3F0 131 aa5.59□□□□□ -1.51
LDLR-211ENST00000560173 ORMDL1Q9P0S3 153 aa5.59□□□□□ -1.51
LDLR-211ENST00000560173 KRTAP4-16G5E9R7 235 aaPredicted RBP5.58□□□□□ -1.52
LDLR-211ENST00000560173 LRP2P98164 4655 aa5.58□□□□□ -1.52
LDLR-211ENST00000560173 hADV29S1A0JD25 119 aa5.57□□□□□ -1.52
LDLR-211ENST00000560173 TMEM256-PLSCR3K7ERE1 68 aa5.57□□□□□ -1.52
LDLR-211ENST00000560173 COX7BP24311 80 aa5.57□□□□□ -1.52
LDLR-211ENST00000560173 LINC00575Q6W349 94 aa5.57□□□□□ -1.52
LDLR-211ENST00000560173 FAM218AQ96MZ4 157 aa5.57□□□□□ -1.52
LDLR-211ENST00000560173 A0A087X002 238 aa5.56□□□□□ -1.52
LDLR-211ENST00000560173 ETDCA0A1B0GVM5 59 aa5.56□□□□□ -1.52
LDLR-211ENST00000560173 HIGD2AQ9BW72 106 aa5.56□□□□□ -1.52
LDLR-211ENST00000560173 ELOF1P60002 83 aaKnown RBP5.55□□□□□ -1.52
LDLR-211ENST00000560173 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.55□□□□□ -1.52
LDLR-211ENST00000560173 B5MCH6 92 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 JMJD7-PLA2G4BH0Y9G9 81 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 CRYGAP11844 174 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 FAM229BQ4G0N7 80 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 VPS25Q9BRG1 176 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 ANAPC11Q9NYG5 84 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 DHRS4-AS1Q9P1J3 65 aa5.54□□□□□ -1.52
LDLR-211ENST00000560173 ACYP1P07311 99 aa5.53□□□□□ -1.52
LDLR-211ENST00000560173 SMCR5Q8TEV8 140 aa5.53□□□□□ -1.52
LDLR-211ENST00000560173 TEX49A0A1B0GTD5 131 aa5.52□□□□□ -1.53
LDLR-211ENST00000560173 FAM240AA0A1B0GVK7 77 aa5.52□□□□□ -1.53
LDLR-211ENST00000560173 KRTAP13-2Q52LG2 175 aa5.52□□□□□ -1.53
LDLR-211ENST00000560173 Q6ZRX8 168 aa5.52□□□□□ -1.53
LDLR-211ENST00000560173 SPRR4Q96PI1 79 aa5.52□□□□□ -1.53
LDLR-211ENST00000560173 Q9BRP9 147 aa5.51□□□□□ -1.53
LDLR-211ENST00000560173 ZNF706Q9Y5V0 76 aaPredicted RBP5.51□□□□□ -1.53
LDLR-211ENST00000560173 ERC2-IT1O76042 136 aa5.5□□□□□ -1.53
LDLR-211ENST00000560173 PDE6GP18545 87 aa5.5□□□□□ -1.53
LDLR-211ENST00000560173 TYMSOSQ8TAI1 123 aa5.5□□□□□ -1.53
LDLR-211ENST00000560173 KRTAP9-2Q9BYQ4 174 aa5.5□□□□□ -1.53
LDLR-211ENST00000560173 Q6ZQY7 126 aa5.49□□□□□ -1.53
LDLR-211ENST00000560173 OBSCN-AS1Q96MR7 158 aa5.49□□□□□ -1.53
LDLR-211ENST00000560173 LINC00483Q53H64 154 aa5.48□□□□□ -1.53
LDLR-211ENST00000560173 C3orf22Q8N5N4 141 aa5.47□□□□□ -1.53
LDLR-211ENST00000560173 LAMTOR3Q9UHA4 124 aa5.47□□□□□ -1.53
LDLR-211ENST00000560173 RBM3P98179 157 aaKnown RBP5.46□□□□□ -1.54
LDLR-211ENST00000560173 GAGE2AQ6NT46 116 aa5.46□□□□□ -1.54
LDLR-211ENST00000560173 SIGMAR1Q99720 223 aa5.46□□□□□ -1.54
LDLR-211ENST00000560173 KRTAP9-6A0A140TA67 174 aa5.45□□□□□ -1.54
LDLR-211ENST00000560173 LINC00304Q8N9R0 145 aa5.45□□□□□ -1.54
LDLR-211ENST00000560173 DSCR8Q96T75 97 aa5.45□□□□□ -1.54
LDLR-211ENST00000560173 LOC110117498A0A087WWA1 95 aa5.44□□□□□ -1.54
LDLR-211ENST00000560173 ST20-AS1Q8NBB2 130 aa5.44□□□□□ -1.54
LDLR-211ENST00000560173 CCKP06307 115 aa5.43□□□□□ -1.54
LDLR-211ENST00000560173 NDUFV3P56181 108 aaKnown RBP5.43□□□□□ -1.54
LDLR-211ENST00000560173 C14orf132Q9NPU4 83 aa5.43□□□□□ -1.54
LDLR-211ENST00000560173 CDIP1Q9H305 208 aa5.42□□□□□ -1.54
LDLR-211ENST00000560173 IGLV5-48A0A075B6I7 105 aa5.41□□□□□ -1.54
LDLR-211ENST00000560173 A0A1B0GW54 56 aa5.41□□□□□ -1.54
LDLR-211ENST00000560173 SPRR1BP22528 89 aa5.41□□□□□ -1.54
LDLR-211ENST00000560173 MOBPQ13875 183 aa5.41□□□□□ -1.54
LDLR-211ENST00000560173 Q8NBF4 154 aa5.41□□□□□ -1.54
LDLR-211ENST00000560173 IGLV9-49A0A0B4J1Y8 123 aa5.4□□□□□ -1.54
LDLR-211ENST00000560173 SCGB1A1P11684 91 aa5.4□□□□□ -1.54
LDLR-211ENST00000560173 LINC00643Q86TS7 51 aa5.4□□□□□ -1.54
LDLR-211ENST00000560173 LPAP08519 4548 aa5.39□□□□□ -1.55
LDLR-211ENST00000560173 F8WEM9 126 aa5.39□□□□□ -1.55
LDLR-211ENST00000560173 SPAG11AQ6PDA7 123 aa5.39□□□□□ -1.55
LDLR-211ENST00000560173 Q6ZQT0 140 aa5.39□□□□□ -1.55
LDLR-211ENST00000560173 TRBV7-4A0A0J9YYF1 115 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 PRR4Q16378 134 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 SSBP3-AS1Q7Z2R9 100 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 Q8N377 158 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 DEFB105AQ8NG35 78 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 UBL5Q9BZL1 73 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 IMUPQ9GZP8 106 aa5.38□□□□□ -1.55
LDLR-211ENST00000560173 LINC01547P58512 204 aaPredicted RBP5.37□□□□□ -1.55
LDLR-211ENST00000560173 C9orf153Q5TBE3 101 aa5.37□□□□□ -1.55
LDLR-211ENST00000560173 ATP5EP2Q5VTU8 51 aa5.37□□□□□ -1.55
LDLR-211ENST00000560173 Q6Q795 121 aa5.36□□□□□ -1.55
LDLR-211ENST00000560173 RETNLBQ9BQ08 111 aa5.36□□□□□ -1.55
LDLR-211ENST00000560173 SPINK1P00995 79 aa5.35□□□□□ -1.55
LDLR-211ENST00000560173 A0A1B0GV72 72 aa5.34□□□□□ -1.55
LDLR-211ENST00000560173 Q6JHZ5 121 aa5.34□□□□□ -1.55
LDLR-211ENST00000560173 SMIM29Q86T20 159 aa5.34□□□□□ -1.55
LDLR-211ENST00000560173 FAT4Q6V0I7 4981 aa5.34□□□□□ -1.56
LDLR-211ENST00000560173 TRBV7-7A0A0K0K1E9 115 aa5.33□□□□□ -1.56
LDLR-211ENST00000560173 MT-ATP8P03928 68 aa5.33□□□□□ -1.56
LDLR-211ENST00000560173 RPS29P62273 56 aaKnown RBP5.33□□□□□ -1.56
LDLR-211ENST00000560173 LINC00846Q9NV44 126 aa5.33□□□□□ -1.56
LDLR-211ENST00000560173 IGLV8-61A0A075B6I0 122 aa5.32□□□□□ -1.56
LDLR-211ENST00000560173 MUC2Q02817 5179 aa5.31□□□□□ -1.56
LDLR-211ENST00000560173 IGLV7-46A0A075B6I9 117 aa5.3□□□□□ -1.56
LDLR-211ENST00000560173 FP248Q71RG6 208 aaPredicted RBP5.3□□□□□ -1.56
LDLR-211ENST00000560173 CXCL6P80162 114 aa5.28□□□□□ -1.56
LDLR-211ENST00000560173 NREPQ16612 68 aa5.28□□□□□ -1.56
LDLR-211ENST00000560173 TPRXLQ17RH7 258 aa5.28□□□□□ -1.56
LDLR-211ENST00000560173 CD164Q04900 197 aa5.27□□□□□ -1.57
LDLR-211ENST00000560173 HRCT1Q6UXD1 115 aa5.27□□□□□ -1.57
LDLR-211ENST00000560173 Q6ZVQ6 151 aa5.27□□□□□ -1.57
LDLR-211ENST00000560173 A0A0G2JQZ4 141 aa5.26□□□□□ -1.57
LDLR-211ENST00000560173 LIMD2Q9BT23 127 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms