RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 IGLV6-57P01721 117 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 C21orf62-AS1Q17RA5 79 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 C9orf129Q5T035 196 aaKnown RBP4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 VPS25Q9BRG1 176 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 XAGE1AQ9HD64 81 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 ORMDL1Q9P0S3 153 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 TMEM256-PLSCR3K7ERE1 68 aa4.77□□□□□ -1.65
CCDC88C-214ENST00000557507 BAALC-AS2P0C853 105 aa4.77□□□□□ -1.65
CCDC88C-214ENST00000557507 hADV29S1A0JD25 119 aa4.76□□□□□ -1.65
CCDC88C-214ENST00000557507 ZNF73O43830 326 aaPredicted RBP4.76□□□□□ -1.65
CCDC88C-214ENST00000557507 ACYP1P07311 99 aa4.76□□□□□ -1.65
CCDC88C-214ENST00000557507 VPREB1P12018 145 aa4.76□□□□□ -1.65
CCDC88C-214ENST00000557507 C6orf99Q4VX62 202 aa4.76□□□□□ -1.65
CCDC88C-214ENST00000557507 IGLV5-37A0A075B6J1 123 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 TRBV10-3A0A0K0K1G6 114 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 JMJD7-PLA2G4BH0Y9G9 81 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 COX7BP24311 80 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 TPRXLQ17RH7 258 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 KRTAP13-2Q52LG2 175 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 MTURNQ8N3F0 131 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 TYMSOSQ8TAI1 123 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 CDIP1Q9H305 208 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 CRCT1Q9UGL9 99 aa4.75□□□□□ -1.65
CCDC88C-214ENST00000557507 PRYO14603 147 aa4.74□□□□□ -1.65
CCDC88C-214ENST00000557507 CRYGAP11844 174 aa4.74□□□□□ -1.65
CCDC88C-214ENST00000557507 LINC00575Q6W349 94 aa4.74□□□□□ -1.65
CCDC88C-214ENST00000557507 ANAPC11Q9NYG5 84 aa4.74□□□□□ -1.65
CCDC88C-214ENST00000557507 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.73□□□□□ -1.65
CCDC88C-214ENST00000557507 DHRS4-AS1Q9P1J3 65 aa4.73□□□□□ -1.65
CCDC88C-214ENST00000557507 C22orf24Q9Y442 160 aa4.73□□□□□ -1.65
CCDC88C-214ENST00000557507 IGLV7-46A0A075B6I9 117 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 FAM240AA0A1B0GVK7 77 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 PDE6GP18545 87 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 ELOF1P60002 83 aaKnown RBP4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 MRPL55Q7Z7F7 128 aaKnown RBP4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 FAM218AQ96MZ4 157 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 LINC00167Q96N53 147 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 KCNQ1DNQ9H478 68 aa4.72□□□□□ -1.65
CCDC88C-214ENST00000557507 ETDCA0A1B0GVM5 59 aa4.71□□□□□ -1.66
CCDC88C-214ENST00000557507 BCE1O60756 84 aa4.71□□□□□ -1.66
CCDC88C-214ENST00000557507 LINC00304Q8N9R0 145 aa4.71□□□□□ -1.66
CCDC88C-214ENST00000557507 TEX49A0A1B0GTD5 131 aa4.7□□□□□ -1.66
CCDC88C-214ENST00000557507 KRTAP13-1Q8IUC0 172 aa4.69□□□□□ -1.66
CCDC88C-214ENST00000557507 SIGMAR1Q99720 223 aa4.69□□□□□ -1.66
CCDC88C-214ENST00000557507 KRTAP4-1Q9BYQ7 146 aa4.69□□□□□ -1.66
CCDC88C-214ENST00000557507 LAMTOR3Q9UHA4 124 aa4.69□□□□□ -1.66
CCDC88C-214ENST00000557507 RPL37AP8A6NKH3 93 aa4.68□□□□□ -1.66
CCDC88C-214ENST00000557507 LINC01547P58512 204 aaPredicted RBP4.68□□□□□ -1.66
CCDC88C-214ENST00000557507 FAM229BQ4G0N7 80 aa4.68□□□□□ -1.66
CCDC88C-214ENST00000557507 Q8NDZ9 215 aa4.68□□□□□ -1.66
CCDC88C-214ENST00000557507 DSCR8Q96T75 97 aa4.68□□□□□ -1.66
CCDC88C-214ENST00000557507 RBM3P98179 157 aaKnown RBP4.67□□□□□ -1.66
CCDC88C-214ENST00000557507 Q6ZQY7 126 aa4.67□□□□□ -1.66
CCDC88C-214ENST00000557507 GAGE2AQ6NT46 116 aa4.66□□□□□ -1.66
CCDC88C-214ENST00000557507 Q6ZRX8 168 aa4.66□□□□□ -1.66
CCDC88C-214ENST00000557507 OBSCN-AS1Q96MR7 158 aa4.66□□□□□ -1.66
CCDC88C-214ENST00000557507 SCGB1A1P11684 91 aa4.65□□□□□ -1.67
CCDC88C-214ENST00000557507 SPRR1AP35321 89 aa4.65□□□□□ -1.67
CCDC88C-214ENST00000557507 UBE2AP49459 152 aa4.65□□□□□ -1.67
CCDC88C-214ENST00000557507 ASB16-AS1Q495Z4 193 aa4.65□□□□□ -1.67
CCDC88C-214ENST00000557507 B5MCH6 92 aa4.64□□□□□ -1.67
CCDC88C-214ENST00000557507 CCKP06307 115 aa4.64□□□□□ -1.67
CCDC88C-214ENST00000557507 KRTAP13-3Q3SY46 172 aa4.64□□□□□ -1.67
CCDC88C-214ENST00000557507 XP32Q5T750 250 aa4.64□□□□□ -1.67
CCDC88C-214ENST00000557507 C3orf22Q8N5N4 141 aa4.64□□□□□ -1.67
CCDC88C-214ENST00000557507 LOC110117498A0A087WWA1 95 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 A0A1B0GW54 56 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 F8WEM9 126 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 NDUFV3P56181 108 aaKnown RBP4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 PRLHP81277 87 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 FAM19A1Q7Z5A9 133 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 C14orf132Q9NPU4 83 aa4.63□□□□□ -1.67
CCDC88C-214ENST00000557507 FP248Q71RG6 208 aaPredicted RBP4.62□□□□□ -1.67
CCDC88C-214ENST00000557507 LINC00643Q86TS7 51 aa4.62□□□□□ -1.67
CCDC88C-214ENST00000557507 UBL5Q9BZL1 73 aa4.62□□□□□ -1.67
CCDC88C-214ENST00000557507 ATP5EP2Q5VTU8 51 aa4.61□□□□□ -1.67
CCDC88C-214ENST00000557507 IMUPQ9GZP8 106 aa4.61□□□□□ -1.67
CCDC88C-214ENST00000557507 KRTAP4-16G5E9R7 235 aaPredicted RBP4.6□□□□□ -1.67
CCDC88C-214ENST00000557507 ZNF706Q9Y5V0 76 aaPredicted RBP4.6□□□□□ -1.67
CCDC88C-214ENST00000557507 IGLV5-48A0A075B6I7 105 aa4.59□□□□□ -1.67
CCDC88C-214ENST00000557507 Q6Q795 121 aa4.59□□□□□ -1.67
CCDC88C-214ENST00000557507 DEFB105AQ8NG35 78 aa4.59□□□□□ -1.67
CCDC88C-214ENST00000557507 SEC61BP60468 96 aaKnown RBP4.58□□□□□ -1.68
CCDC88C-214ENST00000557507 KRTAP19-2Q3LHN2 52 aa4.58□□□□□ -1.68
CCDC88C-214ENST00000557507 Q6ZQT0 140 aa4.58□□□□□ -1.68
CCDC88C-214ENST00000557507 HIGD2AQ9BW72 106 aa4.58□□□□□ -1.68
CCDC88C-214ENST00000557507 MT1HP80294 61 aa4.57□□□□□ -1.68
CCDC88C-214ENST00000557507 SPAG11AQ6PDA7 123 aa4.57□□□□□ -1.68
CCDC88C-214ENST00000557507 Q9BRP9 147 aa4.57□□□□□ -1.68
CCDC88C-214ENST00000557507 TRBV7-4A0A0J9YYF1 115 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 A0A1B0GV72 72 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 Q6JHZ5 121 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 Q8NBF4 154 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 SMCR5Q8TEV8 140 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 SPRR4Q96PI1 79 aa4.56□□□□□ -1.68
CCDC88C-214ENST00000557507 TRBV7-7A0A0K0K1E9 115 aa4.55□□□□□ -1.68
CCDC88C-214ENST00000557507 MT-ATP8P03928 68 aa4.55□□□□□ -1.68
CCDC88C-214ENST00000557507 Q8N377 158 aa4.55□□□□□ -1.68
CCDC88C-214ENST00000557507 PCP4P48539 62 aa4.54□□□□□ -1.68
CCDC88C-214ENST00000557507 KRTAP4-8Q9BYQ9 185 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms