RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LINC00474Q9P2X8 69 aa8.42□□□□□ -1.06
SHMT2-222ENST00000555774 PHF5AQ7RTV0 110 aaKnown RBP8.42□□□□□ -1.06
SHMT2-222ENST00000555774 NOTCH1P46531 2555 aa8.41□□□□□ -1.06
SHMT2-222ENST00000555774 A0A087WSZ3 146 aa8.41□□□□□ -1.06
SHMT2-222ENST00000555774 HRCT1Q6UXD1 115 aa8.4□□□□□ -1.06
SHMT2-222ENST00000555774 ZCCHC13Q8WW36 166 aaKnown RBP8.4□□□□□ -1.07
SHMT2-222ENST00000555774 B9D2Q9BPU9 175 aa8.4□□□□□ -1.07
SHMT2-222ENST00000555774 LRCOL1A6NCL2 159 aa8.39□□□□□ -1.07
SHMT2-222ENST00000555774 CHTF8P0CG12 524 aa8.39□□□□□ -1.07
SHMT2-222ENST00000555774 KRTAP11-1Q8IUC1 163 aa8.38□□□□□ -1.07
SHMT2-222ENST00000555774 A0A0G2JQZ4 141 aa8.38□□□□□ -1.07
SHMT2-222ENST00000555774 NBDYA0A0U1RRE5 68 aa8.38□□□□□ -1.07
SHMT2-222ENST00000555774 FP248Q71RG6 208 aaPredicted RBP8.37□□□□□ -1.07
SHMT2-222ENST00000555774 DNAH9Q9NYC9 4486 aa8.37□□□□□ -1.07
SHMT2-222ENST00000555774 DNAH10Q8IVF4 4471 aa8.37□□□□□ -1.07
SHMT2-222ENST00000555774 NUPR2A6NF83 97 aa8.36□□□□□ -1.07
SHMT2-222ENST00000555774 Q6ZRN7 208 aaPredicted RBP8.34□□□□□ -1.07
SHMT2-222ENST00000555774 NBEAL1Q6ZS30 2694 aa8.34□□□□□ -1.07
SHMT2-222ENST00000555774 KRTAP13-1Q8IUC0 172 aa8.34□□□□□ -1.08
SHMT2-222ENST00000555774 KRTAP29-1A8MX34 341 aaPredicted RBP8.32□□□□□ -1.08
SHMT2-222ENST00000555774 DEFB116Q30KQ4 102 aa8.32□□□□□ -1.08
SHMT2-222ENST00000555774 A8MWP4 228 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 PRR15Q8IV56 129 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 MDFIQ99750 246 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 LINC00472Q9H8W2 130 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 COL6A5A8TX70 2615 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 NDUFB1O75438 58 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 WFDC13Q8IUB5 93 aa8.31□□□□□ -1.08
SHMT2-222ENST00000555774 MP68P56378 58 aa8.3□□□□□ -1.08
SHMT2-222ENST00000555774 H3BPC8 53 aa8.29□□□□□ -1.08
SHMT2-222ENST00000555774 SPACA4Q8TDM5 124 aa8.29□□□□□ -1.08
SHMT2-222ENST00000555774 RPL37AP61513 92 aaKnown RBP8.28□□□□□ -1.08
SHMT2-222ENST00000555774 CASC2Q6XLA1 102 aa8.28□□□□□ -1.08
SHMT2-222ENST00000555774 CYP4F30PQ9H0H9 118 aa8.28□□□□□ -1.08
SHMT2-222ENST00000555774 hDV103S1A0JD37 113 aa8.28□□□□□ -1.08
SHMT2-222ENST00000555774 FAM229BQ4G0N7 80 aa8.28□□□□□ -1.08
SHMT2-222ENST00000555774 PANO1I0J062 215 aa8.27□□□□□ -1.09
SHMT2-222ENST00000555774 LINC00483Q53H64 154 aa8.25□□□□□ -1.09
SHMT2-222ENST00000555774 STAB2Q8WWQ8 2551 aa8.25□□□□□ -1.09
SHMT2-222ENST00000555774 LYSTQ99698 3801 aa8.24□□□□□ -1.09
SHMT2-222ENST00000555774 TRAV22A0A0B4J277 110 aa8.24□□□□□ -1.09
SHMT2-222ENST00000555774 ZNF706Q9Y5V0 76 aaPredicted RBP8.24□□□□□ -1.09
SHMT2-222ENST00000555774 MGAM2Q2M2H8 2515 aa8.23□□□□□ -1.09
SHMT2-222ENST00000555774 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.23□□□□□ -1.09
SHMT2-222ENST00000555774 PLECQ15149 4684 aaKnown RBP8.23□□□□□ -1.09
SHMT2-222ENST00000555774 A0A087WTM6 91 aa8.23□□□□□ -1.09
SHMT2-222ENST00000555774 C1orf64Q8NEQ6 169 aa8.22□□□□□ -1.09
SHMT2-222ENST00000555774 H0Y9P7 68 aa8.21□□□□□ -1.09
SHMT2-222ENST00000555774 LINC00336Q6ZUF6 198 aa8.21□□□□□ -1.09
SHMT2-222ENST00000555774 PRO0628Q9UI54 55 aa8.21□□□□□ -1.1
SHMT2-222ENST00000555774 LINC00208Q96KT6 92 aa8.2□□□□□ -1.1
SHMT2-222ENST00000555774 MMP24-AS1A0A0U1RRL7 71 aa8.2□□□□□ -1.1
SHMT2-222ENST00000555774 SPANXA2-OT1Q8N9U9 137 aa8.2□□□□□ -1.1
SHMT2-222ENST00000555774 MPLKIPQ8TAP9 179 aa8.19□□□□□ -1.1
SHMT2-222ENST00000555774 VPS13DQ5THJ4 4388 aa8.19□□□□□ -1.1
SHMT2-222ENST00000555774 COL7A1Q02388 2944 aa8.18□□□□□ -1.1
SHMT2-222ENST00000555774 IGLV9-49A0A0B4J1Y8 123 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 Q96NJ1 140 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 IGLV5-52A0A0A0MRZ9 124 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 RTL8CO15255 209 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 MOBPQ13875 183 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 Q1T7F1 81 aa8.17□□□□□ -1.1
SHMT2-222ENST00000555774 ASB16-AS1Q495Z4 193 aa8.16□□□□□ -1.1
SHMT2-222ENST00000555774 PLAC8Q9NZF1 115 aa8.16□□□□□ -1.1
SHMT2-222ENST00000555774 DNAH7Q8WXX0 4024 aa8.15□□□□□ -1.1
SHMT2-222ENST00000555774 Q6ZR54 194 aa8.14□□□□□ -1.11
SHMT2-222ENST00000555774 TP53AIP1Q9HCN2 124 aa8.14□□□□□ -1.11
SHMT2-222ENST00000555774 WWC2-AS2Q96NR7 200 aa8.14□□□□□ -1.11
SHMT2-222ENST00000555774 PSORS1C2Q9UIG4 136 aa8.14□□□□□ -1.11
SHMT2-222ENST00000555774 CSMD3Q7Z407 3707 aa8.13□□□□□ -1.11
SHMT2-222ENST00000555774 ZNF861PO60384 105 aa8.13□□□□□ -1.11
SHMT2-222ENST00000555774 PRR4Q16378 134 aa8.12□□□□□ -1.11
SHMT2-222ENST00000555774 C8orf17Q9NRJ1 99 aa8.11□□□□□ -1.11
SHMT2-222ENST00000555774 V9GYY9 64 aa8.09□□□□□ -1.11
SHMT2-222ENST00000555774 DNAH17Q9UFH2 4485 aa8.09□□□□□ -1.11
SHMT2-222ENST00000555774 A0A1B0GVX0 72 aa8.09□□□□□ -1.11
SHMT2-222ENST00000555774 CDK2AP2O75956 126 aa8.08□□□□□ -1.12
SHMT2-222ENST00000555774 BRK1Q8WUW1 75 aa8.08□□□□□ -1.12
SHMT2-222ENST00000555774 STARD9Q9P2P6 4700 aa8.07□□□□□ -1.12
SHMT2-222ENST00000555774 PRKDCP78527 4128 aaKnown RBP8.07□□□□□ -1.12
SHMT2-222ENST00000555774 C1orf134Q5TEV5 83 aa8.05□□□□□ -1.12
SHMT2-222ENST00000555774 IGLV7-46A0A075B6I9 117 aa8.04□□□□□ -1.12
SHMT2-222ENST00000555774 SRRM2Q9UQ35 2752 aaKnown RBP8.04□□□□□ -1.12
SHMT2-222ENST00000555774 IGHV6-1A0A0B4J1U7 121 aa8.03□□□□□ -1.12
SHMT2-222ENST00000555774 IGLV7-43P04211 117 aa8.03□□□□□ -1.12
SHMT2-222ENST00000555774 MRPL34Q9BQ48 92 aaKnown RBP8.03□□□□□ -1.12
SHMT2-222ENST00000555774 DNAH8Q96JB1 4490 aa8.02□□□□□ -1.13
SHMT2-222ENST00000555774 HECTD4Q9Y4D8 3996 aa8.02□□□□□ -1.13
SHMT2-222ENST00000555774 C1orf195Q5TG92 126 aa8.02□□□□□ -1.13
SHMT2-222ENST00000555774 CD164Q04900 197 aa8.01□□□□□ -1.13
SHMT2-222ENST00000555774 ANAPC11Q9NYG5 84 aa8.01□□□□□ -1.13
SHMT2-222ENST00000555774 DNAH2Q9P225 4427 aa8.01□□□□□ -1.13
SHMT2-222ENST00000555774 TENM2Q9NT68 2774 aa8□□□□□ -1.13
SHMT2-222ENST00000555774 NDUFS5O43920 106 aa7.98□□□□□ -1.13
SHMT2-222ENST00000555774 LIMD2Q9BT23 127 aa7.98□□□□□ -1.13
SHMT2-222ENST00000555774 SSBP3-AS1Q7Z2R9 100 aa7.97□□□□□ -1.13
SHMT2-222ENST00000555774 PSPHP1O15172 72 aa7.96□□□□□ -1.13
SHMT2-222ENST00000555774 COA5Q86WW8 74 aa7.96□□□□□ -1.13
SHMT2-222ENST00000555774 Q8N9P0 234 aaPredicted RBP7.96□□□□□ -1.14
SHMT2-222ENST00000555774 PCOTHQ58A44 107 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms