RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 KRTAP4-16G5E9R7 235 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-215ENST00000552823 J3KT08 172 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 LCE2BO14633 110 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 C4orf26Q17RF5 130 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 IGFL1Q6UW32 110 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 SMIM29Q86T20 159 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 C9orf163Q8N9P6 203 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 STARD9Q9P2P6 4700 aa3.5□□□□□ -1.85
LIMA1-215ENST00000552823 SPINK6Q6UWN8 80 aa3.49□□□□□ -1.85
LIMA1-215ENST00000552823 H0Y9J4 135 aa3.49□□□□□ -1.85
LIMA1-215ENST00000552823 K7EQZ3 153 aa3.49□□□□□ -1.85
LIMA1-215ENST00000552823 C14orf177Q52M58 125 aa3.49□□□□□ -1.85
LIMA1-215ENST00000552823 DNAH3Q8TD57 4116 aa3.49□□□□□ -1.85
LIMA1-215ENST00000552823 A0A087WTM6 91 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 RTL8CO15255 209 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 ATP5EP2Q5VTU8 51 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 Q8NBF4 154 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 IGLV5-52A0A0A0MRZ9 124 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 IGKV4-1P06312 121 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 SPRR1AP35321 89 aa3.48□□□□□ -1.85
LIMA1-215ENST00000552823 KMT2AQ03164 3969 aa3.47□□□□□ -1.85
LIMA1-215ENST00000552823 H3BQ85 93 aa3.46□□□□□ -1.85
LIMA1-215ENST00000552823 OXTP01178 125 aa3.46□□□□□ -1.85
LIMA1-215ENST00000552823 CNBPP62633 177 aaKnown RBP3.46□□□□□ -1.85
LIMA1-215ENST00000552823 C1orf134Q5TEV5 83 aa3.46□□□□□ -1.85
LIMA1-215ENST00000552823 PLA2G2DQ9UNK4 145 aa3.46□□□□□ -1.85
LIMA1-215ENST00000552823 IGLV5-48A0A075B6I7 105 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 DNAH1Q9P2D7 4330 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 IGLV5-37A0A075B6J1 123 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 TRAV7A0A075B6U4 112 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 CRYGAP11844 174 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 CXCL6P80162 114 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 LINC00336Q6ZUF6 198 aa3.46□□□□□ -1.86
LIMA1-215ENST00000552823 MOBPQ13875 183 aa3.45□□□□□ -1.86
LIMA1-215ENST00000552823 PSORS1C2Q9UIG4 136 aa3.45□□□□□ -1.86
LIMA1-215ENST00000552823 NDUFS5O43920 106 aa3.45□□□□□ -1.86
LIMA1-215ENST00000552823 DSCR10P59022 87 aa3.45□□□□□ -1.86
LIMA1-215ENST00000552823 Q6ZRN7 208 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-215ENST00000552823 CIRBP-AS1Q8TBR5 109 aa3.44□□□□□ -1.86
LIMA1-215ENST00000552823 KRTAP10-2P60368 255 aa3.44□□□□□ -1.86
LIMA1-215ENST00000552823 TMEM254Q8TBM7 123 aa3.44□□□□□ -1.86
LIMA1-215ENST00000552823 DNAH11Q96DT5 4516 aa3.44□□□□□ -1.86
LIMA1-215ENST00000552823 FAM236DA0A1B0GTK5 79 aa3.43□□□□□ -1.86
LIMA1-215ENST00000552823 FAM236CP0DP71 79 aa3.43□□□□□ -1.86
LIMA1-215ENST00000552823 TMEM258P61165 79 aa3.43□□□□□ -1.86
LIMA1-215ENST00000552823 FLG2Q5D862 2391 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-215ENST00000552823 BCE1O60756 84 aa3.43□□□□□ -1.86
LIMA1-215ENST00000552823 RETNLBQ9BQ08 111 aa3.43□□□□□ -1.86
LIMA1-215ENST00000552823 IGHV6-1A0A0B4J1U7 121 aa3.42□□□□□ -1.86
LIMA1-215ENST00000552823 C1orf195Q5TG92 126 aa3.42□□□□□ -1.86
LIMA1-215ENST00000552823 MPLKIPQ8TAP9 179 aa3.42□□□□□ -1.86
LIMA1-215ENST00000552823 LINC00208Q96KT6 92 aa3.42□□□□□ -1.86
LIMA1-215ENST00000552823 DMBT1Q9UGM3 2413 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-215ENST00000552823 H7BZZ5 65 aa3.41□□□□□ -1.86
LIMA1-215ENST00000552823 LINC00474Q9P2X8 69 aa3.41□□□□□ -1.86
LIMA1-215ENST00000552823 SPACA4Q8TDM5 124 aa3.41□□□□□ -1.86
LIMA1-215ENST00000552823 VPS13DQ5THJ4 4388 aa3.41□□□□□ -1.86
LIMA1-215ENST00000552823 HCG22E2RYF7 251 aa3.41□□□□□ -1.86
LIMA1-215ENST00000552823 SMR3BP02814 79 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-215ENST00000552823 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
LIMA1-215ENST00000552823 CDK2AP2O75956 126 aa3.4□□□□□ -1.87
LIMA1-215ENST00000552823 LCE2CQ5TA81 110 aa3.4□□□□□ -1.87
LIMA1-215ENST00000552823 PRO0628Q9UI54 55 aa3.4□□□□□ -1.87
LIMA1-215ENST00000552823 PCOTHQ58A44 107 aa3.39□□□□□ -1.87
LIMA1-215ENST00000552823 CASC2Q6XLA1 102 aa3.39□□□□□ -1.87
LIMA1-215ENST00000552823 SPRR4Q96PI1 79 aa3.39□□□□□ -1.87
LIMA1-215ENST00000552823 OCR1Q9BZK8 76 aa3.39□□□□□ -1.87
LIMA1-215ENST00000552823 DNAH2Q9P225 4427 aa3.39□□□□□ -1.87
LIMA1-215ENST00000552823 A0A0U1RQV1 116 aa3.38□□□□□ -1.87
LIMA1-215ENST00000552823 RPS28P62857 69 aaKnown RBP3.38□□□□□ -1.87
LIMA1-215ENST00000552823 Q6ZR54 194 aa3.38□□□□□ -1.87
LIMA1-215ENST00000552823 NDUFB1O75438 58 aa3.38□□□□□ -1.87
LIMA1-215ENST00000552823 PRR26Q8N8Z3 221 aa3.38□□□□□ -1.87
LIMA1-215ENST00000552823 LCE2AQ5TA79 106 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-215ENST00000552823 FRAS1Q86XX4 4008 aa3.38□□□□□ -1.87
LIMA1-215ENST00000552823 ZNF861PO60384 105 aa3.37□□□□□ -1.87
LIMA1-215ENST00000552823 KRTAP10-1P60331 282 aa3.37□□□□□ -1.87
LIMA1-215ENST00000552823 A0A087X002 238 aa3.37□□□□□ -1.87
LIMA1-215ENST00000552823 NOTCH2NLQ7Z3S9 236 aa3.37□□□□□ -1.87
LIMA1-215ENST00000552823 WWC2-AS2Q96NR7 200 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 DNAH17Q9UFH2 4485 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 MP68P56378 58 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 DNAH6Q9C0G6 4158 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 DNAH8Q96JB1 4490 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 H0Y9P7 68 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 KLKP1Q107X0 134 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 FAM229BQ4G0N7 80 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 PRR15Q8IV56 129 aa3.36□□□□□ -1.87
LIMA1-215ENST00000552823 IGLV7-43P04211 117 aa3.35□□□□□ -1.87
LIMA1-215ENST00000552823 hDV103S1A0JD37 113 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 LRP1BQ9NZR2 4599 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 HYDINQ4G0P3 5121 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 A8MWP4 228 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 BRK1Q8WUW1 75 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 LINC00472Q9H8W2 130 aa3.34□□□□□ -1.87
LIMA1-215ENST00000552823 KRTAP13-1Q8IUC0 172 aa3.34□□□□□ -1.88
LIMA1-215ENST00000552823 PLAC8Q9NZF1 115 aa3.34□□□□□ -1.88
LIMA1-215ENST00000552823 SERP1Q9Y6X1 66 aa3.34□□□□□ -1.88
LIMA1-215ENST00000552823 C1orf64Q8NEQ6 169 aa3.33□□□□□ -1.88
LIMA1-215ENST00000552823 CD164Q04900 197 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 189.5 ms