RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 TRAV13-2A0A0B4J235 113 aa6.76□□□□□ -1.33
PTCH1-221ENST00000550914 F8WEM9 126 aa6.75□□□□□ -1.33
PTCH1-221ENST00000550914 C21orf62-AS1Q17RA5 79 aa6.75□□□□□ -1.33
PTCH1-221ENST00000550914 MUSTN1Q8IVN3 82 aa6.74□□□□□ -1.33
PTCH1-221ENST00000550914 Q6JHZ5 121 aa6.73□□□□□ -1.33
PTCH1-221ENST00000550914 SMIM11BQ8TCY0 68 aa6.73□□□□□ -1.33
PTCH1-221ENST00000550914 C20orf202A1L168 122 aa6.72□□□□□ -1.33
PTCH1-221ENST00000550914 ANKRD39Q53RE8 183 aa6.72□□□□□ -1.33
PTCH1-221ENST00000550914 SVIPQ8NHG7 77 aa6.72□□□□□ -1.33
PTCH1-221ENST00000550914 KRTDAPP60985 99 aa6.71□□□□□ -1.34
PTCH1-221ENST00000550914 VAMP3Q15836 100 aa6.71□□□□□ -1.34
PTCH1-221ENST00000550914 COA6Q5JTJ3 125 aaKnown RBP6.71□□□□□ -1.34
PTCH1-221ENST00000550914 Q75L30 129 aa6.71□□□□□ -1.34
PTCH1-221ENST00000550914 SLC7A5P1Q8MH63 180 aa6.71□□□□□ -1.34
PTCH1-221ENST00000550914 CLEC2BQ92478 149 aa6.71□□□□□ -1.34
PTCH1-221ENST00000550914 TRBV7-7A0A0K0K1E9 115 aa6.7□□□□□ -1.34
PTCH1-221ENST00000550914 ATP11AUNQ6ZP68 121 aa6.7□□□□□ -1.34
PTCH1-221ENST00000550914 LINC00575Q6W349 94 aa6.69□□□□□ -1.34
PTCH1-221ENST00000550914 PCP2Q8IVA1 136 aa6.69□□□□□ -1.34
PTCH1-221ENST00000550914 IGFL1Q6UW32 110 aa6.67□□□□□ -1.34
PTCH1-221ENST00000550914 Q6ZQY7 126 aa6.67□□□□□ -1.34
PTCH1-221ENST00000550914 OBSCN-AS1Q96MR7 158 aa6.67□□□□□ -1.34
PTCH1-221ENST00000550914 hADV29S1A0JD25 119 aa6.66□□□□□ -1.34
PTCH1-221ENST00000550914 SNRPEP62304 92 aaKnown RBP6.66□□□□□ -1.34
PTCH1-221ENST00000550914 OCIAD2Q56VL3 154 aa6.66□□□□□ -1.34
PTCH1-221ENST00000550914 Q6Q795 121 aa6.65□□□□□ -1.34
PTCH1-221ENST00000550914 ATOH7Q8N100 152 aa6.65□□□□□ -1.34
PTCH1-221ENST00000550914 PPDPFLQ8WWR9 84 aa6.65□□□□□ -1.34
PTCH1-221ENST00000550914 CFC1P0CG37 223 aa6.64□□□□□ -1.35
PTCH1-221ENST00000550914 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.63□□□□□ -1.35
PTCH1-221ENST00000550914 LST1O00453 97 aa6.62□□□□□ -1.35
PTCH1-221ENST00000550914 USH2AO75445 5202 aa6.62□□□□□ -1.35
PTCH1-221ENST00000550914 SCGB1D1O95968 90 aa6.61□□□□□ -1.35
PTCH1-221ENST00000550914 Q96NJ1 140 aa6.6□□□□□ -1.35
PTCH1-221ENST00000550914 C20orf166-AS1Q96NR2 134 aa6.6□□□□□ -1.35
PTCH1-221ENST00000550914 SNHG12Q9BXW3 62 aa6.6□□□□□ -1.35
PTCH1-221ENST00000550914 BVES-AS1Q5T3Y7 98 aa6.59□□□□□ -1.35
PTCH1-221ENST00000550914 KRTAP9-8Q9BYQ0 159 aa6.59□□□□□ -1.35
PTCH1-221ENST00000550914 SS18L2Q9UHA2 77 aa6.59□□□□□ -1.35
PTCH1-221ENST00000550914 SSPOA2VEC9 5147 aa6.58□□□□□ -1.36
PTCH1-221ENST00000550914 A8MUU9 505 aa6.58□□□□□ -1.36
PTCH1-221ENST00000550914 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.58□□□□□ -1.36
PTCH1-221ENST00000550914 TRBV20-1A0A075B6N2 111 aa6.56□□□□□ -1.36
PTCH1-221ENST00000550914 KRTAP9-7A8MTY7 169 aa6.56□□□□□ -1.36
PTCH1-221ENST00000550914 HSBP1L1C9JCN9 74 aa6.55□□□□□ -1.36
PTCH1-221ENST00000550914 H3BUT2 72 aa6.55□□□□□ -1.36
PTCH1-221ENST00000550914 TEN1Q86WV5 123 aa6.54□□□□□ -1.36
PTCH1-221ENST00000550914 C12orf57Q99622 126 aa6.53□□□□□ -1.36
PTCH1-221ENST00000550914 SNCGO76070 127 aa6.51□□□□□ -1.37
PTCH1-221ENST00000550914 FCGBPQ9Y6R7 5405 aaPredicted RBP6.5□□□□□ -1.37
PTCH1-221ENST00000550914 HIST1H4GQ99525 98 aa6.5□□□□□ -1.37
PTCH1-221ENST00000550914 NDUFV3P56181 108 aaKnown RBP6.49□□□□□ -1.37
PTCH1-221ENST00000550914 HIST3H2BBQ8N257 126 aa6.49□□□□□ -1.37
PTCH1-221ENST00000550914 HIST1H2BLQ99880 126 aa6.49□□□□□ -1.37
PTCH1-221ENST00000550914 A0A087WSZ3 146 aa6.48□□□□□ -1.37
PTCH1-221ENST00000550914 H0YGX0 51 aa6.48□□□□□ -1.37
PTCH1-221ENST00000550914 S100A2P29034 98 aa6.47□□□□□ -1.37
PTCH1-221ENST00000550914 MT2AP02795 61 aa6.46□□□□□ -1.38
PTCH1-221ENST00000550914 DSCR10P59022 87 aa6.45□□□□□ -1.38
PTCH1-221ENST00000550914 H3BMG7 143 aa6.44□□□□□ -1.38
PTCH1-221ENST00000550914 DLEU1O43261 78 aa6.44□□□□□ -1.38
PTCH1-221ENST00000550914 COX8AP10176 69 aa6.44□□□□□ -1.38
PTCH1-221ENST00000550914 RAB37Q96AX2 223 aa6.44□□□□□ -1.38
PTCH1-221ENST00000550914 FAM236DA0A1B0GTK5 79 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 A0A1B0GX51 115 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 KRTAP16-1A8MUX0 517 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 FAM236CP0DP71 79 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 LINC00313P59037 77 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 MPLKIPQ8TAP9 179 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 FAM218AQ96MZ4 157 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 SIGMAR1Q99720 223 aa6.43□□□□□ -1.38
PTCH1-221ENST00000550914 A0A0B4J2C4 111 aa6.42□□□□□ -1.38
PTCH1-221ENST00000550914 RBM12B-AS1Q9P1G2 102 aa6.42□□□□□ -1.38
PTCH1-221ENST00000550914 A0A1W2PNM2 257 aa6.4□□□□□ -1.38
PTCH1-221ENST00000550914 H3BS24 57 aa6.4□□□□□ -1.38
PTCH1-221ENST00000550914 MT1FP04733 61 aa6.4□□□□□ -1.38
PTCH1-221ENST00000550914 FABP2P12104 132 aa6.39□□□□□ -1.39
PTCH1-221ENST00000550914 HRES1P13985 223 aa6.39□□□□□ -1.39
PTCH1-221ENST00000550914 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
PTCH1-221ENST00000550914 KRTAP9-3Q9BYQ3 159 aa6.39□□□□□ -1.39
PTCH1-221ENST00000550914 HIGD1BQ9P298 99 aa6.39□□□□□ -1.39
PTCH1-221ENST00000550914 TRBV7-4A0A0J9YYF1 115 aa6.38□□□□□ -1.39
PTCH1-221ENST00000550914 IGKV4-1P06312 121 aa6.38□□□□□ -1.39
PTCH1-221ENST00000550914 S100A6P06703 90 aa6.37□□□□□ -1.39
PTCH1-221ENST00000550914 KRTAP10-10P60014 251 aa6.37□□□□□ -1.39
PTCH1-221ENST00000550914 H3BQ85 93 aa6.35□□□□□ -1.39
PTCH1-221ENST00000550914 NOTCH2NLQ7Z3S9 236 aa6.35□□□□□ -1.39
PTCH1-221ENST00000550914 ANKRD29Q8N6D5 301 aa6.35□□□□□ -1.39
PTCH1-221ENST00000550914 C14orf144Q96I85 54 aa6.34□□□□□ -1.39
PTCH1-221ENST00000550914 LINC00472Q9H8W2 130 aa6.34□□□□□ -1.39
PTCH1-221ENST00000550914 PRO1854Q9UHT4 67 aa6.34□□□□□ -1.39
PTCH1-221ENST00000550914 C2orf91Q6ZV80 131 aa6.32□□□□□ -1.4
PTCH1-221ENST00000550914 MTURNQ8N3F0 131 aa6.32□□□□□ -1.4
PTCH1-221ENST00000550914 TRIAP1O43715 76 aa6.31□□□□□ -1.4
PTCH1-221ENST00000550914 DNAL4O96015 105 aa6.31□□□□□ -1.4
PTCH1-221ENST00000550914 CEND1Q8N111 149 aa6.31□□□□□ -1.4
PTCH1-221ENST00000550914 KRTAP4-8Q9BYQ9 185 aa6.31□□□□□ -1.4
PTCH1-221ENST00000550914 ORMDL1Q9P0S3 153 aa6.31□□□□□ -1.4
PTCH1-221ENST00000550914 IGHV6-1A0A0B4J1U7 121 aa6.3□□□□□ -1.4
PTCH1-221ENST00000550914 LINC00846Q9NV44 126 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms