RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 NOTCH3Q9UM47 2321 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 INAFM1C9JVW0 142 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 CRPP02741 224 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 CHTF8P0CG12 524 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 NTM-AS1Q6ZSK4 140 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 SPANXA2-OT1Q8N9U9 137 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 ZCCHC13Q8WW36 166 aaKnown RBP2.57□□□□□ -2
PTPRB-207ENST00000549400 RPL36ALQ969Q0 106 aaKnown RBP2.57□□□□□ -2
PTPRB-207ENST00000549400 PRAC1Q96KF2 57 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 LINC00208Q96KT6 92 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 LINC01558Q9Y6Z2 57 aa2.57□□□□□ -2
PTPRB-207ENST00000549400 IGHV3-73A0A0B4J1V6 119 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 LECT2O14960 151 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 ROMO1P60602 79 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 PRR4Q16378 134 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 C9orf129Q5T035 196 aaKnown RBP2.56□□□□□ -2
PTPRB-207ENST00000549400 CASC10Q5T4H9 136 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 C9orf66Q5T8R8 295 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 Q6ZQT0 140 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 Q6ZTI0 123 aa2.56□□□□□ -2
PTPRB-207ENST00000549400 A0A087WYN8 130 aa2.55□□□□□ -2
PTPRB-207ENST00000549400 IGKV2-29A2NJV5 120 aaPredicted RBP2.55□□□□□ -2
PTPRB-207ENST00000549400 CNBPP62633 177 aaKnown RBP2.55□□□□□ -2
PTPRB-207ENST00000549400 DNAH10Q8IVF4 4471 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 DNAH17Q9UFH2 4485 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 DNAH2Q9P225 4427 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 IGHV3-64A0A075B6Q5 118 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 TRGV1A0A0A0MS02 117 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 SMIM1B2RUZ4 78 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 H3BPC8 53 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 SPAG11BQ08648 103 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 SPAG11AQ6PDA7 123 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 SMIM11BQ8TCY0 68 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 WFDC10AQ9H1F0 79 aa2.54□□□□□ -2
PTPRB-207ENST00000549400 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.53□□□□□ -2
PTPRB-207ENST00000549400 A0A1B0GUV1 79 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 ETDCA0A1B0GVM5 59 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 RTL8CO15255 209 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 ADM2Q7Z4H4 148 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 Q8NAQ8 132 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 COX7B2Q8TF08 81 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 SMR3AQ99954 134 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 NOP10Q9NPE3 64 aaKnown RBP2.53□□□□□ -2
PTPRB-207ENST00000549400 CDKN2A-AS1Q9UH64 79 aa2.53□□□□□ -2
PTPRB-207ENST00000549400 PRKDCP78527 4128 aaKnown RBP2.53□□□□□ -2.01
PTPRB-207ENST00000549400 DNAH7Q8WXX0 4024 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 F8P00451 2351 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 IGLV5-37A0A075B6J1 123 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 HTN1P15515 57 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 MIR22HGQ0VDD5 57 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 PLAC8Q9NZF1 115 aa2.52□□□□□ -2.01
PTPRB-207ENST00000549400 TRGV2A0A075B6R0 118 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 A0A1W2PNM2 257 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 RPL37AP8A6NKH3 93 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 K7ERS5 55 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 IGKV4-1P06312 121 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 COX6A2Q02221 97 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 HIGD2BQ4VC39 106 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 CSAG1Q6PB30 78 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 Q8NDZ9 215 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 DEFB104AQ8WTQ1 72 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 PRO0255Q9UI72 69 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 DNAH11Q96DT5 4516 aa2.51□□□□□ -2.01
PTPRB-207ENST00000549400 TENM3Q9P273 2699 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 RYR1P21817 5038 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 DNAH6Q9C0G6 4158 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.5□□□□□ -2.01
PTPRB-207ENST00000549400 H3BNG1 76 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 KPRPQ5T749 579 aaPredicted RBP2.5□□□□□ -2.01
PTPRB-207ENST00000549400 MUC7Q8TAX7 377 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 C7orf33Q8WU49 177 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 C8orf17Q9NRJ1 99 aa2.5□□□□□ -2.01
PTPRB-207ENST00000549400 TGP01266 2768 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 DNAH8Q96JB1 4490 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 IGLV4-60A0A075B6I1 120 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 A0A087WSZ3 146 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 TRGV4A0A0C4DH28 118 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 H0Y9P7 68 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 Q8IZM0 81 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 CAMK2N2Q96S95 79 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 PRR34Q9NV39 138 aa2.49□□□□□ -2.01
PTPRB-207ENST00000549400 IGKV2-28A0A075B6P5 120 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 LINC00959A0A1B0GUT2 108 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 IGKV2D-28P01615 120 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 SPINK7P58062 85 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 KRTAP10-6P60371 365 aaPredicted RBP2.48□□□□□ -2.01
PTPRB-207ENST00000549400 Q6ZR54 194 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 KCNQ1DNQ9H478 68 aa2.48□□□□□ -2.01
PTPRB-207ENST00000549400 STARD9Q9P2P6 4700 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 A0A096LPF7 62 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 GVQW2A0A096LPI5 108 aaPredicted RBP2.47□□□□□ -2.01
PTPRB-207ENST00000549400 A0A0J9YWU9 116 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 COX7BP24311 80 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 COX17Q14061 63 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 DEFB135Q30KP9 77 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 LELP1Q5T871 98 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 SPATA8Q6RVD6 105 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 COA5Q86WW8 74 aa2.47□□□□□ -2.01
PTPRB-207ENST00000549400 STAB2Q8WWQ8 2551 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms