RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TRBV7-7A0A0K0K1E9 115 aa8.26□□□□□ -1.09
PTCH1-215ENST00000547672 KRTAP10-1P60331 282 aa8.26□□□□□ -1.09
PTCH1-215ENST00000547672 SMIM29Q86T20 159 aa8.26□□□□□ -1.09
PTCH1-215ENST00000547672 IGLV7-43P04211 117 aa8.25□□□□□ -1.09
PTCH1-215ENST00000547672 DNAH2Q9P225 4427 aa8.24□□□□□ -1.09
PTCH1-215ENST00000547672 KMT2AQ03164 3969 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 NREPQ16612 68 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 SCXQ7RTU7 201 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 C3orf22Q8N5N4 141 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 Q8NBF4 154 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 SPRR4Q96PI1 79 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 FAM30AQ9NZY2 134 aa8.23□□□□□ -1.09
PTCH1-215ENST00000547672 LINC00483Q53H64 154 aa8.22□□□□□ -1.09
PTCH1-215ENST00000547672 DNAH17Q9UFH2 4485 aa8.22□□□□□ -1.09
PTCH1-215ENST00000547672 CXCL6P80162 114 aa8.21□□□□□ -1.1
PTCH1-215ENST00000547672 Q6ZVQ6 151 aa8.21□□□□□ -1.1
PTCH1-215ENST00000547672 CRYGAP11844 174 aa8.2□□□□□ -1.1
PTCH1-215ENST00000547672 HAMPP81172 84 aa8.19□□□□□ -1.1
PTCH1-215ENST00000547672 EPPK1P58107 5090 aaKnown RBP8.18□□□□□ -1.1
PTCH1-215ENST00000547672 IGFL1Q6UW32 110 aa8.18□□□□□ -1.1
PTCH1-215ENST00000547672 A0A1W2PNM2 257 aa8.17□□□□□ -1.1
PTCH1-215ENST00000547672 HECTD4Q9Y4D8 3996 aa8.16□□□□□ -1.1
PTCH1-215ENST00000547672 RYR2Q92736 4967 aa8.16□□□□□ -1.1
PTCH1-215ENST00000547672 PCP4P48539 62 aa8.16□□□□□ -1.1
PTCH1-215ENST00000547672 IGKV3D-7A0A0C4DH55 119 aa8.15□□□□□ -1.1
PTCH1-215ENST00000547672 A0A1B0GVY2 172 aa8.15□□□□□ -1.1
PTCH1-215ENST00000547672 C9orf153Q5TBE3 101 aa8.14□□□□□ -1.11
PTCH1-215ENST00000547672 BPY2O14599 106 aa8.13□□□□□ -1.11
PTCH1-215ENST00000547672 HIST1H4AP62805 103 aaKnown RBP8.13□□□□□ -1.11
PTCH1-215ENST00000547672 BIRC6Q9NR09 4857 aa8.12□□□□□ -1.11
PTCH1-215ENST00000547672 SSBP3-AS1Q7Z2R9 100 aa8.12□□□□□ -1.11
PTCH1-215ENST00000547672 IGLV9-49A0A0B4J1Y8 123 aa8.11□□□□□ -1.11
PTCH1-215ENST00000547672 FAM229BQ4G0N7 80 aa8.11□□□□□ -1.11
PTCH1-215ENST00000547672 SS18L2Q9UHA2 77 aa8.1□□□□□ -1.11
PTCH1-215ENST00000547672 FRAS1Q86XX4 4008 aa8.1□□□□□ -1.11
PTCH1-215ENST00000547672 J3KT08 172 aa8.07□□□□□ -1.12
PTCH1-215ENST00000547672 ATOX1O00244 68 aa8.07□□□□□ -1.12
PTCH1-215ENST00000547672 CD164Q04900 197 aa8.07□□□□□ -1.12
PTCH1-215ENST00000547672 SPINK6Q6UWN8 80 aa8.07□□□□□ -1.12
PTCH1-215ENST00000547672 ANAPC13Q9BS18 74 aa8.07□□□□□ -1.12
PTCH1-215ENST00000547672 A0A087WSZ3 146 aa8.06□□□□□ -1.12
PTCH1-215ENST00000547672 FAM236AA0A1B0GUQ0 79 aa8.06□□□□□ -1.12
PTCH1-215ENST00000547672 FAM236BA0A1B0GV22 79 aa8.06□□□□□ -1.12
PTCH1-215ENST00000547672 MOBPQ13875 183 aa8.06□□□□□ -1.12
PTCH1-215ENST00000547672 SMIM20Q8N5G0 67 aa8.04□□□□□ -1.12
PTCH1-215ENST00000547672 PKD1P98161 4303 aa8.03□□□□□ -1.12
PTCH1-215ENST00000547672 DNAH11Q96DT5 4516 aa8.03□□□□□ -1.12
PTCH1-215ENST00000547672 HYDINQ4G0P3 5121 aa8.03□□□□□ -1.12
PTCH1-215ENST00000547672 C4orf48Q5BLP8 95 aa8.02□□□□□ -1.13
PTCH1-215ENST00000547672 SACSQ9NZJ4 4579 aa8□□□□□ -1.13
PTCH1-215ENST00000547672 FAT2Q9NYQ8 4349 aa8□□□□□ -1.13
PTCH1-215ENST00000547672 DNAH8Q96JB1 4490 aa8□□□□□ -1.13
PTCH1-215ENST00000547672 A0A0G2JQZ4 141 aa7.99□□□□□ -1.13
PTCH1-215ENST00000547672 NDUFB1O75438 58 aa7.99□□□□□ -1.13
PTCH1-215ENST00000547672 ANAPC11Q9NYG5 84 aa7.99□□□□□ -1.13
PTCH1-215ENST00000547672 SRRM2Q9UQ35 2752 aaKnown RBP7.99□□□□□ -1.13
PTCH1-215ENST00000547672 A0A087WVE0 104 aa7.98□□□□□ -1.13
PTCH1-215ENST00000547672 FAM229AH3BQW9 127 aa7.98□□□□□ -1.13
PTCH1-215ENST00000547672 PLA2G1BP04054 148 aaKnown RBP7.98□□□□□ -1.13
PTCH1-215ENST00000547672 J3QL48 77 aa7.97□□□□□ -1.13
PTCH1-215ENST00000547672 KRTAP17-1Q9BYP8 105 aa7.97□□□□□ -1.13
PTCH1-215ENST00000547672 LINC00472Q9H8W2 130 aa7.97□□□□□ -1.13
PTCH1-215ENST00000547672 CDK2AP2O75956 126 aa7.96□□□□□ -1.14
PTCH1-215ENST00000547672 IGKV4-1P06312 121 aa7.96□□□□□ -1.14
PTCH1-215ENST00000547672 DNAH5Q8TE73 4624 aa7.96□□□□□ -1.14
PTCH1-215ENST00000547672 DSCR10P59022 87 aa7.94□□□□□ -1.14
PTCH1-215ENST00000547672 ASB16-AS1Q495Z4 193 aa7.94□□□□□ -1.14
PTCH1-215ENST00000547672 HRCT1Q6UXD1 115 aa7.94□□□□□ -1.14
PTCH1-215ENST00000547672 SERP2Q8N6R1 65 aa7.94□□□□□ -1.14
PTCH1-215ENST00000547672 A8MWP4 228 aa7.93□□□□□ -1.14
PTCH1-215ENST00000547672 SMR3BP02814 79 aaPredicted RBP7.93□□□□□ -1.14
PTCH1-215ENST00000547672 LIMD2Q9BT23 127 aa7.93□□□□□ -1.14
PTCH1-215ENST00000547672 UQCRQO14949 82 aa7.92□□□□□ -1.14
PTCH1-215ENST00000547672 KRTAP1-4P0C5Y4 121 aa7.92□□□□□ -1.14
PTCH1-215ENST00000547672 Q5XG85 94 aa7.92□□□□□ -1.14
PTCH1-215ENST00000547672 SPAG11AQ6PDA7 123 aa7.92□□□□□ -1.14
PTCH1-215ENST00000547672 TYMSOSQ8TAI1 123 aa7.92□□□□□ -1.14
PTCH1-215ENST00000547672 TRAV7A0A075B6U4 112 aa7.91□□□□□ -1.14
PTCH1-215ENST00000547672 COX7CP15954 63 aa7.9□□□□□ -1.14
PTCH1-215ENST00000547672 PRR15Q8IV56 129 aa7.9□□□□□ -1.14
PTCH1-215ENST00000547672 A0A087X002 238 aa7.89□□□□□ -1.15
PTCH1-215ENST00000547672 HCG22E2RYF7 251 aa7.89□□□□□ -1.15
PTCH1-215ENST00000547672 SPINK1P00995 79 aa7.89□□□□□ -1.15
PTCH1-215ENST00000547672 KRTAP13-2Q52LG2 175 aa7.89□□□□□ -1.15
PTCH1-215ENST00000547672 Q8N9L7 120 aa7.89□□□□□ -1.15
PTCH1-215ENST00000547672 PCLOQ9Y6V0 5065 aa7.88□□□□□ -1.15
PTCH1-215ENST00000547672 K7EQZ3 153 aa7.88□□□□□ -1.15
PTCH1-215ENST00000547672 DEFB116Q30KQ4 102 aa7.88□□□□□ -1.15
PTCH1-215ENST00000547672 RPS29P62273 56 aaKnown RBP7.86□□□□□ -1.15
PTCH1-215ENST00000547672 Q96NJ1 140 aa7.84□□□□□ -1.15
PTCH1-215ENST00000547672 KRTAP10-4P60372 401 aaPredicted RBP7.83□□□□□ -1.16
PTCH1-215ENST00000547672 A0A1B0GVX0 72 aa7.82□□□□□ -1.16
PTCH1-215ENST00000547672 CASC2Q6XLA1 102 aa7.82□□□□□ -1.16
PTCH1-215ENST00000547672 LRP1BQ9NZR2 4599 aa7.82□□□□□ -1.16
PTCH1-215ENST00000547672 LINC00304Q8N9R0 145 aa7.81□□□□□ -1.16
PTCH1-215ENST00000547672 C8orf87E5RJ46 101 aa7.8□□□□□ -1.16
PTCH1-215ENST00000547672 PRR26Q8N8Z3 221 aa7.79□□□□□ -1.16
PTCH1-215ENST00000547672 DYNC1H1Q14204 4646 aaKnown RBP7.78□□□□□ -1.16
PTCH1-215ENST00000547672 hDV103S1A0JD37 113 aa7.78□□□□□ -1.16
PTCH1-215ENST00000547672 CCDC179H3BU77 68 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms