RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PSCAO43653 123 aa9.94□□□□□ -0.82
LDLR-204ENST00000545707 CHTF8P0CG12 524 aa9.94□□□□□ -0.82
LDLR-204ENST00000545707 KRTAP11-1Q8IUC1 163 aa9.94□□□□□ -0.82
LDLR-204ENST00000545707 FAM229BQ4G0N7 80 aa9.94□□□□□ -0.82
LDLR-204ENST00000545707 SMIM26A0A096LP01 95 aa9.93□□□□□ -0.82
LDLR-204ENST00000545707 C16orf90A8MZG2 172 aa9.93□□□□□ -0.82
LDLR-204ENST00000545707 PHF5AQ7RTV0 110 aaKnown RBP9.91□□□□□ -0.82
LDLR-204ENST00000545707 A0A087WSZ3 146 aa9.91□□□□□ -0.82
LDLR-204ENST00000545707 ATP5EP56381 51 aaPredicted RBP9.89□□□□□ -0.83
LDLR-204ENST00000545707 RPL37AP61513 92 aaKnown RBP9.88□□□□□ -0.83
LDLR-204ENST00000545707 UBE2DNLQ8IWF7 75 aa9.88□□□□□ -0.83
LDLR-204ENST00000545707 CNBPP62633 177 aaKnown RBP9.87□□□□□ -0.83
LDLR-204ENST00000545707 WFDC13Q8IUB5 93 aa9.87□□□□□ -0.83
LDLR-204ENST00000545707 LINC00336Q6ZUF6 198 aa9.87□□□□□ -0.83
LDLR-204ENST00000545707 HCG22E2RYF7 251 aa9.86□□□□□ -0.83
LDLR-204ENST00000545707 UBE2AP49459 152 aa9.86□□□□□ -0.83
LDLR-204ENST00000545707 MPLKIPQ8TAP9 179 aa9.86□□□□□ -0.83
LDLR-204ENST00000545707 LCE6AA0A183 80 aa9.85□□□□□ -0.83
LDLR-204ENST00000545707 LRCOL1A6NCL2 159 aa9.82□□□□□ -0.84
LDLR-204ENST00000545707 PLECQ15149 4684 aaKnown RBP9.82□□□□□ -0.84
LDLR-204ENST00000545707 PRR4Q16378 134 aa9.82□□□□□ -0.84
LDLR-204ENST00000545707 APLNQ9ULZ1 77 aa9.81□□□□□ -0.84
LDLR-204ENST00000545707 IGLV8-61A0A075B6I0 122 aa9.81□□□□□ -0.84
LDLR-204ENST00000545707 ZCCHC13Q8WW36 166 aaKnown RBP9.81□□□□□ -0.84
LDLR-204ENST00000545707 PANO1I0J062 215 aa9.8□□□□□ -0.84
LDLR-204ENST00000545707 C9orf163Q8N9P6 203 aa9.75□□□□□ -0.85
LDLR-204ENST00000545707 C1orf64Q8NEQ6 169 aa9.75□□□□□ -0.85
LDLR-204ENST00000545707 hDV103S1A0JD37 113 aa9.73□□□□□ -0.85
LDLR-204ENST00000545707 C14orf177Q52M58 125 aa9.73□□□□□ -0.85
LDLR-204ENST00000545707 DYNC2H1Q8NCM8 4307 aaKnown RBP9.72□□□□□ -0.85
LDLR-204ENST00000545707 KRTAP29-1A8MX34 341 aaPredicted RBP9.71□□□□□ -0.85
LDLR-204ENST00000545707 SPRR1BP22528 89 aa9.71□□□□□ -0.85
LDLR-204ENST00000545707 LINC00208Q96KT6 92 aa9.71□□□□□ -0.85
LDLR-204ENST00000545707 CASC2Q6XLA1 102 aa9.7□□□□□ -0.86
LDLR-204ENST00000545707 LINC00472Q9H8W2 130 aa9.7□□□□□ -0.86
LDLR-204ENST00000545707 H0Y9J4 135 aa9.7□□□□□ -0.86
LDLR-204ENST00000545707 PRR15Q8IV56 129 aa9.7□□□□□ -0.86
LDLR-204ENST00000545707 B9D2Q9BPU9 175 aa9.69□□□□□ -0.86
LDLR-204ENST00000545707 PRO0628Q9UI54 55 aa9.69□□□□□ -0.86
LDLR-204ENST00000545707 NBDYA0A0U1RRE5 68 aa9.68□□□□□ -0.86
LDLR-204ENST00000545707 BRK1Q8WUW1 75 aa9.68□□□□□ -0.86
LDLR-204ENST00000545707 MP68P56378 58 aa9.67□□□□□ -0.86
LDLR-204ENST00000545707 MDFIQ99750 246 aa9.67□□□□□ -0.86
LDLR-204ENST00000545707 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.67□□□□□ -0.86
LDLR-204ENST00000545707 IGLV9-49A0A0B4J1Y8 123 aa9.66□□□□□ -0.86
LDLR-204ENST00000545707 A8MWP4 228 aa9.66□□□□□ -0.86
LDLR-204ENST00000545707 Q6ZRN7 208 aaPredicted RBP9.65□□□□□ -0.86
LDLR-204ENST00000545707 TRAV22A0A0B4J277 110 aa9.65□□□□□ -0.86
LDLR-204ENST00000545707 H0Y9P7 68 aa9.65□□□□□ -0.86
LDLR-204ENST00000545707 KRTAP13-1Q8IUC0 172 aa9.64□□□□□ -0.87
LDLR-204ENST00000545707 STARD9Q9P2P6 4700 aa9.64□□□□□ -0.87
LDLR-204ENST00000545707 CYP4F30PQ9H0H9 118 aa9.61□□□□□ -0.87
LDLR-204ENST00000545707 HECTD4Q9Y4D8 3996 aa9.6□□□□□ -0.87
LDLR-204ENST00000545707 FRAS1Q86XX4 4008 aa9.6□□□□□ -0.87
LDLR-204ENST00000545707 NDUFB1O75438 58 aa9.6□□□□□ -0.87
LDLR-204ENST00000545707 ANAPC11Q9NYG5 84 aa9.59□□□□□ -0.87
LDLR-204ENST00000545707 MMP24-AS1A0A0U1RRL7 71 aa9.58□□□□□ -0.88
LDLR-204ENST00000545707 SPACA4Q8TDM5 124 aa9.58□□□□□ -0.88
LDLR-204ENST00000545707 PKIGQ9Y2B9 76 aa9.58□□□□□ -0.88
LDLR-204ENST00000545707 PSPHP1O15172 72 aa9.58□□□□□ -0.88
LDLR-204ENST00000545707 KMT2AQ03164 3969 aa9.56□□□□□ -0.88
LDLR-204ENST00000545707 Q96NJ1 140 aa9.56□□□□□ -0.88
LDLR-204ENST00000545707 VPS13DQ5THJ4 4388 aa9.55□□□□□ -0.88
LDLR-204ENST00000545707 Q1T7F1 81 aa9.55□□□□□ -0.88
LDLR-204ENST00000545707 MOBPQ13875 183 aa9.54□□□□□ -0.88
LDLR-204ENST00000545707 DNAH2Q9P225 4427 aa9.54□□□□□ -0.88
LDLR-204ENST00000545707 DNAH8Q96JB1 4490 aa9.54□□□□□ -0.88
LDLR-204ENST00000545707 NUPR2A6NF83 97 aa9.53□□□□□ -0.88
LDLR-204ENST00000545707 TGP01266 2768 aa9.53□□□□□ -0.88
LDLR-204ENST00000545707 A0A087WTM6 91 aa9.52□□□□□ -0.89
LDLR-204ENST00000545707 PRKDCP78527 4128 aaKnown RBP9.52□□□□□ -0.89
LDLR-204ENST00000545707 PSORS1C2Q9UIG4 136 aa9.52□□□□□ -0.89
LDLR-204ENST00000545707 FBN3Q75N90 2809 aa9.49□□□□□ -0.89
LDLR-204ENST00000545707 IGHV6-1A0A0B4J1U7 121 aa9.48□□□□□ -0.89
LDLR-204ENST00000545707 H3BPC8 53 aa9.48□□□□□ -0.89
LDLR-204ENST00000545707 RTL8CO15255 209 aa9.48□□□□□ -0.89
LDLR-204ENST00000545707 PCOTHQ58A44 107 aa9.48□□□□□ -0.89
LDLR-204ENST00000545707 WWC2-AS2Q96NR7 200 aa9.48□□□□□ -0.89
LDLR-204ENST00000545707 A8MUN3 132 aa9.47□□□□□ -0.89
LDLR-204ENST00000545707 LINC00483Q53H64 154 aa9.47□□□□□ -0.89
LDLR-204ENST00000545707 SPANXA2-OT1Q8N9U9 137 aa9.47□□□□□ -0.89
LDLR-204ENST00000545707 C8orf17Q9NRJ1 99 aa9.46□□□□□ -0.89
LDLR-204ENST00000545707 DNAH17Q9UFH2 4485 aa9.46□□□□□ -0.89
LDLR-204ENST00000545707 MEGF8Q7Z7M0 2845 aa9.45□□□□□ -0.9
LDLR-204ENST00000545707 A0A087X002 238 aa9.45□□□□□ -0.9
LDLR-204ENST00000545707 IGLV5-52A0A0A0MRZ9 124 aa9.45□□□□□ -0.9
LDLR-204ENST00000545707 NDUFS5O43920 106 aa9.45□□□□□ -0.9
LDLR-204ENST00000545707 NOTCH2NLQ7Z3S9 236 aa9.45□□□□□ -0.9
LDLR-204ENST00000545707 ASB16-AS1Q495Z4 193 aa9.43□□□□□ -0.9
LDLR-204ENST00000545707 A0A1B0GVX0 72 aa9.41□□□□□ -0.9
LDLR-204ENST00000545707 ZNF861PO60384 105 aa9.41□□□□□ -0.9
LDLR-204ENST00000545707 CD164Q04900 197 aa9.41□□□□□ -0.9
LDLR-204ENST00000545707 ZNF706Q9Y5V0 76 aaPredicted RBP9.4□□□□□ -0.9
LDLR-204ENST00000545707 A8MU10 97 aa9.4□□□□□ -0.91
LDLR-204ENST00000545707 SPINK6Q6UWN8 80 aa9.39□□□□□ -0.91
LDLR-204ENST00000545707 Q8N9P0 234 aaPredicted RBP9.39□□□□□ -0.91
LDLR-204ENST00000545707 CDK2AP2O75956 126 aa9.39□□□□□ -0.91
LDLR-204ENST00000545707 PLAC8Q9NZF1 115 aa9.39□□□□□ -0.91
LDLR-204ENST00000545707 IGLV7-46A0A075B6I9 117 aa9.38□□□□□ -0.91
LDLR-204ENST00000545707 COA5Q86WW8 74 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms