RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RYR2Q92736 4967 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 HCG22E2RYF7 251 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 NOP10Q9NPE3 64 aaKnown RBP3.45□□□□□ -1.86
USP28-213ENST00000544967 PRM2P04554 102 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 WFDC10AQ9H1F0 79 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 ASB16-AS1Q495Z4 193 aa3.44□□□□□ -1.86
USP28-213ENST00000544967 A6NN06 94 aa3.44□□□□□ -1.86
USP28-213ENST00000544967 SMIM29Q86T20 159 aa3.44□□□□□ -1.86
USP28-213ENST00000544967 LINC00269Q8N2A0 174 aa3.44□□□□□ -1.86
USP28-213ENST00000544967 MGAM2Q2M2H8 2515 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 SCXQ7RTU7 201 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 DNAH2Q9P225 4427 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.43□□□□□ -1.86
USP28-213ENST00000544967 SPAG11BQ08648 103 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 C7orf65Q6ZTY9 151 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
USP28-213ENST00000544967 CDC42SE1Q9NRR8 79 aa3.43□□□□□ -1.86
USP28-213ENST00000544967 PRO0255Q9UI72 69 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 TENM3Q9P273 2699 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 IGKV3OR2-268A0A0C4DH90 116 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 Q8NBF4 154 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 PRR34Q9NV39 138 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 H3BNG1 76 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 C3orf84H3BNL1 204 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 NOTCH2NLQ7Z3S9 236 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 DHRS4-AS1Q9P1J3 65 aa3.42□□□□□ -1.86
USP28-213ENST00000544967 FAT2Q9NYQ8 4349 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 C16orf90A8MZG2 172 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 WWC2-AS2Q96NR7 200 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 HECTD4Q9Y4D8 3996 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 DNAH10Q8IVF4 4471 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 C10orf25Q5T742 122 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 LINC00208Q96KT6 92 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 PLAC8Q9NZF1 115 aa3.41□□□□□ -1.86
USP28-213ENST00000544967 LRCOL1A6NCL2 159 aa3.4□□□□□ -1.86
USP28-213ENST00000544967 PRB2P02812 416 aaPredicted RBP3.4□□□□□ -1.87
USP28-213ENST00000544967 DSCR10P59022 87 aa3.4□□□□□ -1.87
USP28-213ENST00000544967 UNQ6190/PRO20217Q6UXQ8 127 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 Q8N9L7 120 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 KMT2CQ8NEZ4 4911 aaKnown RBP3.39□□□□□ -1.87
USP28-213ENST00000544967 C6orf48Q9UBA6 75 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 HYDINQ4G0P3 5121 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 IGLV5-37A0A075B6J1 123 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 C9orf116Q5BN46 136 aaPredicted RBP3.39□□□□□ -1.87
USP28-213ENST00000544967 C9orf163Q8N9P6 203 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 LINC01558Q9Y6Z2 57 aa3.39□□□□□ -1.87
USP28-213ENST00000544967 RYR3Q15413 4870 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 A0A1W2PNM2 257 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 CHKB-CPT1BH3BT56 60 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 LELP1Q5T871 98 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 Q8N377 158 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 KLK12Q9UKR0 248 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 PKD1P98161 4303 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 NBEAL2Q6ZNJ1 2754 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 DEFB135Q30KP9 77 aa3.38□□□□□ -1.87
USP28-213ENST00000544967 IGLV8-61A0A075B6I0 122 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 NUPR2A6NF83 97 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 KRTAP29-1A8MX34 341 aaPredicted RBP3.37□□□□□ -1.87
USP28-213ENST00000544967 SPRR1AP35321 89 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 CNBPP62633 177 aaKnown RBP3.37□□□□□ -1.87
USP28-213ENST00000544967 IGLV7-46A0A075B6I9 117 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 KMT2AQ03164 3969 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 DNAH11Q96DT5 4516 aa3.37□□□□□ -1.87
USP28-213ENST00000544967 RPL37AP8A6NKH3 93 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 ANGP03950 147 aaKnown RBP3.36□□□□□ -1.87
USP28-213ENST00000544967 C1orf137Q5JT78 98 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 CASC10Q5T4H9 136 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 IGKV2D-24A0A075B6R9 120 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 TLX1NBP0CAT3 122 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 ADM2Q7Z4H4 148 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 ST20-AS1Q8NBB2 130 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 PRR15LQ9BU68 103 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 APLNQ9ULZ1 77 aa3.36□□□□□ -1.87
USP28-213ENST00000544967 KRTAP4-16G5E9R7 235 aaPredicted RBP3.35□□□□□ -1.87
USP28-213ENST00000544967 Q6ZRX8 168 aa3.35□□□□□ -1.87
USP28-213ENST00000544967 K7EQZ3 153 aa3.35□□□□□ -1.87
USP28-213ENST00000544967 SPART-AS1P0CW21 52 aa3.35□□□□□ -1.87
USP28-213ENST00000544967 PRAC1Q96KF2 57 aa3.35□□□□□ -1.87
USP28-213ENST00000544967 DNAH8Q96JB1 4490 aa3.34□□□□□ -1.87
USP28-213ENST00000544967 STAB2Q8WWQ8 2551 aa3.34□□□□□ -1.87
USP28-213ENST00000544967 A6NED7 52 aa3.34□□□□□ -1.88
USP28-213ENST00000544967 CLPSL2Q6UWE3 100 aa3.34□□□□□ -1.88
USP28-213ENST00000544967 DYNC1H1Q14204 4646 aaKnown RBP3.33□□□□□ -1.88
USP28-213ENST00000544967 H0Y9P7 68 aa3.33□□□□□ -1.88
USP28-213ENST00000544967 KRTAP26-1Q6PEX3 210 aa3.33□□□□□ -1.88
USP28-213ENST00000544967 COA5Q86WW8 74 aa3.33□□□□□ -1.88
USP28-213ENST00000544967 CAMK2N2Q96S95 79 aa3.33□□□□□ -1.88
USP28-213ENST00000544967 A8MU10 97 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 KRTAP16-1A8MUX0 517 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 CHTF8P0CG12 524 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 MOBPQ13875 183 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 TP53AIP1Q9HCN2 124 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 TGP01266 2768 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 XAGE1AQ9HD64 81 aa3.32□□□□□ -1.88
USP28-213ENST00000544967 IGLV10-54A0A075B6I4 117 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 CASC2Q6XLA1 102 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 Q6ZR54 194 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 DEFB130BP0DP73 79 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 DEFB130AP0DP74 79 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 LINC00476Q8WZB0 136 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms