RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 J3KT08 172 aa11.23□□□□□ -0.61
VIM-209ENST00000544301 DPH3Q96FX2 82 aa11.23□□□□□ -0.61
VIM-209ENST00000544301 RPS28P62857 69 aaKnown RBP11.22□□□□□ -0.61
VIM-209ENST00000544301 LINC00474Q9P2X8 69 aa11.22□□□□□ -0.61
VIM-209ENST00000544301 PRKDCP78527 4128 aaKnown RBP11.22□□□□□ -0.61
VIM-209ENST00000544301 PANO1I0J062 215 aa11.21□□□□□ -0.62
VIM-209ENST00000544301 SNURFQ9Y675 71 aa11.2□□□□□ -0.62
VIM-209ENST00000544301 H7BZZ5 65 aa11.2□□□□□ -0.62
VIM-209ENST00000544301 UBE2AP49459 152 aa11.2□□□□□ -0.62
VIM-209ENST00000544301 DSCR10P59022 87 aa11.19□□□□□ -0.62
VIM-209ENST00000544301 SRRM2Q9UQ35 2752 aaKnown RBP11.19□□□□□ -0.62
VIM-209ENST00000544301 OCR1Q9BZK8 76 aa11.18□□□□□ -0.62
VIM-209ENST00000544301 SPRR1BP22528 89 aa11.17□□□□□ -0.62
VIM-209ENST00000544301 HECTD4Q9Y4D8 3996 aa11.15□□□□□ -0.62
VIM-209ENST00000544301 K7EQZ3 153 aa11.14□□□□□ -0.63
VIM-209ENST00000544301 SPACA4Q8TDM5 124 aa11.13□□□□□ -0.63
VIM-209ENST00000544301 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.13□□□□□ -0.63
VIM-209ENST00000544301 MEGF8Q7Z7M0 2845 aa11.13□□□□□ -0.63
VIM-209ENST00000544301 FAM236DA0A1B0GTK5 79 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 FAM236CP0DP71 79 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 TMEM254Q8TBM7 123 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 A0A087WSZ3 146 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 A0A087WTM6 91 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 KRTAP13-1Q8IUC0 172 aa11.12□□□□□ -0.63
VIM-209ENST00000544301 OXTP01178 125 aa11.1□□□□□ -0.63
VIM-209ENST00000544301 NDUFC1O43677 76 aa11.09□□□□□ -0.63
VIM-209ENST00000544301 DEFB116Q30KQ4 102 aa11.08□□□□□ -0.64
VIM-209ENST00000544301 C5orf47Q569G3 176 aa11.08□□□□□ -0.64
VIM-209ENST00000544301 DNAH2Q9P225 4427 aa11.08□□□□□ -0.64
VIM-209ENST00000544301 FAM30AQ9NZY2 134 aa11.08□□□□□ -0.64
VIM-209ENST00000544301 KMT2AQ03164 3969 aa11.07□□□□□ -0.64
VIM-209ENST00000544301 A0A0U1RQV1 116 aa11.06□□□□□ -0.64
VIM-209ENST00000544301 Q6ZR54 194 aa11.06□□□□□ -0.64
VIM-209ENST00000544301 DNAH17Q9UFH2 4485 aa11.04□□□□□ -0.64
VIM-209ENST00000544301 HCG22E2RYF7 251 aa11.03□□□□□ -0.64
VIM-209ENST00000544301 RTL8CO15255 209 aa11.03□□□□□ -0.64
VIM-209ENST00000544301 DNHD1Q96M86 4753 aa11.02□□□□□ -0.64
VIM-209ENST00000544301 LCE6AA0A183 80 aa11□□□□□ -0.65
VIM-209ENST00000544301 SERP1Q9Y6X1 66 aa11□□□□□ -0.65
VIM-209ENST00000544301 RPL37AP61513 92 aaKnown RBP10.99□□□□□ -0.65
VIM-209ENST00000544301 LINC00472Q9H8W2 130 aa10.97□□□□□ -0.65
VIM-209ENST00000544301 FBN3Q75N90 2809 aa10.96□□□□□ -0.65
VIM-209ENST00000544301 PLAC8Q9NZF1 115 aa10.96□□□□□ -0.66
VIM-209ENST00000544301 ATP5EP56381 51 aaPredicted RBP10.95□□□□□ -0.66
VIM-209ENST00000544301 PSORS1C2Q9UIG4 136 aa10.95□□□□□ -0.66
VIM-209ENST00000544301 LINC00483Q53H64 154 aa10.94□□□□□ -0.66
VIM-209ENST00000544301 DNAH8Q96JB1 4490 aa10.94□□□□□ -0.66
VIM-209ENST00000544301 IGLV5-52A0A0A0MRZ9 124 aa10.94□□□□□ -0.66
VIM-209ENST00000544301 WFDC13Q8IUB5 93 aa10.94□□□□□ -0.66
VIM-209ENST00000544301 IGLV9-49A0A0B4J1Y8 123 aa10.93□□□□□ -0.66
VIM-209ENST00000544301 C1orf134Q5TEV5 83 aa10.93□□□□□ -0.66
VIM-209ENST00000544301 PRR15Q8IV56 129 aa10.92□□□□□ -0.66
VIM-209ENST00000544301 A8MWP4 228 aa10.91□□□□□ -0.66
VIM-209ENST00000544301 KRTAP29-1A8MX34 341 aaPredicted RBP10.91□□□□□ -0.66
VIM-209ENST00000544301 TGP01266 2768 aa10.91□□□□□ -0.66
VIM-209ENST00000544301 ZNF706Q9Y5V0 76 aaPredicted RBP10.9□□□□□ -0.67
VIM-209ENST00000544301 ZCCHC13Q8WW36 166 aaKnown RBP10.89□□□□□ -0.67
VIM-209ENST00000544301 FRAS1Q86XX4 4008 aa10.88□□□□□ -0.67
VIM-209ENST00000544301 Q5XG85 94 aa10.88□□□□□ -0.67
VIM-209ENST00000544301 DNAH6Q9C0G6 4158 aa10.87□□□□□ -0.67
VIM-209ENST00000544301 ZNF861PO60384 105 aa10.87□□□□□ -0.67
VIM-209ENST00000544301 LY6G6CO95867 125 aa10.87□□□□□ -0.67
VIM-209ENST00000544301 CASC2Q6XLA1 102 aa10.86□□□□□ -0.67
VIM-209ENST00000544301 WWC2-AS2Q96NR7 200 aa10.86□□□□□ -0.67
VIM-209ENST00000544301 Q96NJ1 140 aa10.83□□□□□ -0.68
VIM-209ENST00000544301 ANAPC11Q9NYG5 84 aa10.83□□□□□ -0.68
VIM-209ENST00000544301 HRCT1Q6UXD1 115 aa10.82□□□□□ -0.68
VIM-209ENST00000544301 MOBPQ13875 183 aa10.82□□□□□ -0.68
VIM-209ENST00000544301 C4orf26Q17RF5 130 aa10.81□□□□□ -0.68
VIM-209ENST00000544301 SMIM26A0A096LP01 95 aa10.79□□□□□ -0.68
VIM-209ENST00000544301 MMP24-AS1A0A0U1RRL7 71 aa10.79□□□□□ -0.68
VIM-209ENST00000544301 DNAH5Q8TE73 4624 aa10.79□□□□□ -0.68
VIM-209ENST00000544301 DNAH11Q96DT5 4516 aa10.78□□□□□ -0.68
VIM-209ENST00000544301 NDUFB1O75438 58 aa10.78□□□□□ -0.68
VIM-209ENST00000544301 MP68P56378 58 aa10.78□□□□□ -0.68
VIM-209ENST00000544301 IGLV7-43P04211 117 aa10.76□□□□□ -0.69
VIM-209ENST00000544301 FP248Q71RG6 208 aaPredicted RBP10.75□□□□□ -0.69
VIM-209ENST00000544301 KRTAP10-2P60368 255 aa10.74□□□□□ -0.69
VIM-209ENST00000544301 ALMS1Q8TCU4 4167 aa10.73□□□□□ -0.69
VIM-209ENST00000544301 hDV103S1A0JD37 113 aa10.73□□□□□ -0.69
VIM-209ENST00000544301 H0Y9P7 68 aa10.73□□□□□ -0.69
VIM-209ENST00000544301 LINC00208Q96KT6 92 aa10.73□□□□□ -0.69
VIM-209ENST00000544301 FAM229BQ4G0N7 80 aa10.72□□□□□ -0.69
VIM-209ENST00000544301 TRAV22A0A0B4J277 110 aa10.71□□□□□ -0.69
VIM-209ENST00000544301 CIRBP-AS1Q8TBR5 109 aa10.7□□□□□ -0.7
VIM-209ENST00000544301 ASB16-AS1Q495Z4 193 aa10.7□□□□□ -0.7
VIM-209ENST00000544301 H3BPC8 53 aa10.69□□□□□ -0.7
VIM-209ENST00000544301 C8orf17Q9NRJ1 99 aa10.68□□□□□ -0.7
VIM-209ENST00000544301 PKD1P98161 4303 aa10.67□□□□□ -0.7
VIM-209ENST00000544301 A0A1B0GVX0 72 aa10.67□□□□□ -0.7
VIM-209ENST00000544301 CYP4F30PQ9H0H9 118 aa10.66□□□□□ -0.7
VIM-209ENST00000544301 IGHV6-1A0A0B4J1U7 121 aa10.65□□□□□ -0.7
VIM-209ENST00000544301 C1orf64Q8NEQ6 169 aa10.65□□□□□ -0.7
VIM-209ENST00000544301 PRR4Q16378 134 aa10.64□□□□□ -0.71
VIM-209ENST00000544301 CDK2AP2O75956 126 aa10.63□□□□□ -0.71
VIM-209ENST00000544301 FAT2Q9NYQ8 4349 aa10.63□□□□□ -0.71
VIM-209ENST00000544301 HYDINQ4G0P3 5121 aa10.63□□□□□ -0.71
VIM-209ENST00000544301 Q6ZSA8 131 aa10.61□□□□□ -0.71
VIM-209ENST00000544301 TP53AIP1Q9HCN2 124 aa10.61□□□□□ -0.71
VIM-209ENST00000544301 KRTAP10-1P60331 282 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms