RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 UBE2AP49459 152 aa10.14□□□□□ -0.79
COL4A1-204ENST00000543140 BPY2O14599 106 aa10.13□□□□□ -0.79
COL4A1-204ENST00000543140 SPACA4Q8TDM5 124 aa10.13□□□□□ -0.79
COL4A1-204ENST00000543140 RTL8CO15255 209 aa10.11□□□□□ -0.79
COL4A1-204ENST00000543140 IGFL1Q6UW32 110 aa10.11□□□□□ -0.79
COL4A1-204ENST00000543140 LY6G6CO95867 125 aa10.11□□□□□ -0.79
COL4A1-204ENST00000543140 SPRR4Q96PI1 79 aa10.11□□□□□ -0.79
COL4A1-204ENST00000543140 H0Y9J4 135 aa10.1□□□□□ -0.79
COL4A1-204ENST00000543140 IGKV4-1P06312 121 aa10.09□□□□□ -0.79
COL4A1-204ENST00000543140 BCE1O60756 84 aa10.08□□□□□ -0.8
COL4A1-204ENST00000543140 A0A1B0GW54 56 aa10.08□□□□□ -0.8
COL4A1-204ENST00000543140 OXTP01178 125 aa10.07□□□□□ -0.8
COL4A1-204ENST00000543140 C1orf134Q5TEV5 83 aa10.07□□□□□ -0.8
COL4A1-204ENST00000543140 C20orf197Q8N268 126 aa10.07□□□□□ -0.8
COL4A1-204ENST00000543140 HECTD4Q9Y4D8 3996 aa10.05□□□□□ -0.8
COL4A1-204ENST00000543140 J3KT08 172 aa10.04□□□□□ -0.8
COL4A1-204ENST00000543140 IGLV8-61A0A075B6I0 122 aa10.04□□□□□ -0.8
COL4A1-204ENST00000543140 KRTAP13-1Q8IUC0 172 aa10.04□□□□□ -0.8
COL4A1-204ENST00000543140 DNAH2Q9P225 4427 aa10.04□□□□□ -0.8
COL4A1-204ENST00000543140 TRAV7A0A075B6U4 112 aa10.03□□□□□ -0.8
COL4A1-204ENST00000543140 IGLV5-52A0A0A0MRZ9 124 aa10.03□□□□□ -0.8
COL4A1-204ENST00000543140 A0A087WSZ3 146 aa10.02□□□□□ -0.81
COL4A1-204ENST00000543140 SPRR1BP22528 89 aa10.02□□□□□ -0.81
COL4A1-204ENST00000543140 DEFB116Q30KQ4 102 aa10.01□□□□□ -0.81
COL4A1-204ENST00000543140 TMEM258P61165 79 aa10□□□□□ -0.81
COL4A1-204ENST00000543140 DSCR10P59022 87 aa9.99□□□□□ -0.81
COL4A1-204ENST00000543140 SNURFQ9Y675 71 aa9.99□□□□□ -0.81
COL4A1-204ENST00000543140 PSORS1C2Q9UIG4 136 aa9.98□□□□□ -0.81
COL4A1-204ENST00000543140 K7EQZ3 153 aa9.97□□□□□ -0.81
COL4A1-204ENST00000543140 PLAC8Q9NZF1 115 aa9.97□□□□□ -0.81
COL4A1-204ENST00000543140 IGLV9-49A0A0B4J1Y8 123 aa9.94□□□□□ -0.82
COL4A1-204ENST00000543140 WWC2-AS2Q96NR7 200 aa9.94□□□□□ -0.82
COL4A1-204ENST00000543140 DNAH17Q9UFH2 4485 aa9.92□□□□□ -0.82
COL4A1-204ENST00000543140 KRTAP10-2P60368 255 aa9.91□□□□□ -0.82
COL4A1-204ENST00000543140 RPL37AP61513 92 aaKnown RBP9.91□□□□□ -0.82
COL4A1-204ENST00000543140 RPS28P62857 69 aaKnown RBP9.91□□□□□ -0.82
COL4A1-204ENST00000543140 OCR1Q9BZK8 76 aa9.91□□□□□ -0.82
COL4A1-204ENST00000543140 ANAPC11Q9NYG5 84 aa9.9□□□□□ -0.82
COL4A1-204ENST00000543140 H7BZZ5 65 aa9.9□□□□□ -0.83
COL4A1-204ENST00000543140 C4orf26Q17RF5 130 aa9.9□□□□□ -0.83
COL4A1-204ENST00000543140 FAM30AQ9NZY2 134 aa9.89□□□□□ -0.83
COL4A1-204ENST00000543140 ZNF861PO60384 105 aa9.87□□□□□ -0.83
COL4A1-204ENST00000543140 KLKP1Q107X0 134 aa9.87□□□□□ -0.83
COL4A1-204ENST00000543140 FAM236DA0A1B0GTK5 79 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 FAM236CP0DP71 79 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 KRTAP21-3Q3LHN1 58 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 LINC00483Q53H64 154 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 HRCT1Q6UXD1 115 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 FRAS1Q86XX4 4008 aa9.86□□□□□ -0.83
COL4A1-204ENST00000543140 DNAH6Q9C0G6 4158 aa9.85□□□□□ -0.83
COL4A1-204ENST00000543140 TMEM254Q8TBM7 123 aa9.85□□□□□ -0.83
COL4A1-204ENST00000543140 DNAH8Q96JB1 4490 aa9.84□□□□□ -0.83
COL4A1-204ENST00000543140 HCG22E2RYF7 251 aa9.84□□□□□ -0.83
COL4A1-204ENST00000543140 Q5XG85 94 aa9.84□□□□□ -0.83
COL4A1-204ENST00000543140 ZNF706Q9Y5V0 76 aaPredicted RBP9.84□□□□□ -0.83
COL4A1-204ENST00000543140 WFDC13Q8IUB5 93 aa9.83□□□□□ -0.84
COL4A1-204ENST00000543140 CIRBP-AS1Q8TBR5 109 aa9.83□□□□□ -0.84
COL4A1-204ENST00000543140 MOBPQ13875 183 aa9.83□□□□□ -0.84
COL4A1-204ENST00000543140 LINC00472Q9H8W2 130 aa9.83□□□□□ -0.84
COL4A1-204ENST00000543140 IGLV7-43P04211 117 aa9.81□□□□□ -0.84
COL4A1-204ENST00000543140 HYDINQ4G0P3 5121 aa9.77□□□□□ -0.85
COL4A1-204ENST00000543140 KRTAP10-1P60331 282 aa9.77□□□□□ -0.85
COL4A1-204ENST00000543140 PRR15Q8IV56 129 aa9.77□□□□□ -0.85
COL4A1-204ENST00000543140 A0A0U1RQV1 116 aa9.76□□□□□ -0.85
COL4A1-204ENST00000543140 A8MWP4 228 aa9.76□□□□□ -0.85
COL4A1-204ENST00000543140 C5orf47Q569G3 176 aa9.75□□□□□ -0.85
COL4A1-204ENST00000543140 DNAH5Q8TE73 4624 aa9.74□□□□□ -0.85
COL4A1-204ENST00000543140 DNAH11Q96DT5 4516 aa9.73□□□□□ -0.85
COL4A1-204ENST00000543140 ALMS1Q8TCU4 4167 aa9.73□□□□□ -0.85
COL4A1-204ENST00000543140 Q96NJ1 140 aa9.73□□□□□ -0.85
COL4A1-204ENST00000543140 NDUFC1O43677 76 aa9.72□□□□□ -0.85
COL4A1-204ENST00000543140 CASC2Q6XLA1 102 aa9.72□□□□□ -0.85
COL4A1-204ENST00000543140 KRTAP29-1A8MX34 341 aaPredicted RBP9.71□□□□□ -0.85
COL4A1-204ENST00000543140 PKD1P98161 4303 aa9.71□□□□□ -0.86
COL4A1-204ENST00000543140 SERP1Q9Y6X1 66 aa9.71□□□□□ -0.86
COL4A1-204ENST00000543140 Q6ZSA8 131 aa9.7□□□□□ -0.86
COL4A1-204ENST00000543140 LCE6AA0A183 80 aa9.7□□□□□ -0.86
COL4A1-204ENST00000543140 NDUFB1O75438 58 aa9.67□□□□□ -0.86
COL4A1-204ENST00000543140 FP248Q71RG6 208 aaPredicted RBP9.67□□□□□ -0.86
COL4A1-204ENST00000543140 FAT2Q9NYQ8 4349 aa9.67□□□□□ -0.86
COL4A1-204ENST00000543140 FAM229BQ4G0N7 80 aa9.66□□□□□ -0.86
COL4A1-204ENST00000543140 MMP24-AS1A0A0U1RRL7 71 aa9.64□□□□□ -0.87
COL4A1-204ENST00000543140 IGHV6-1A0A0B4J1U7 121 aa9.62□□□□□ -0.87
COL4A1-204ENST00000543140 hDV103S1A0JD37 113 aa9.61□□□□□ -0.87
COL4A1-204ENST00000543140 ZCCHC13Q8WW36 166 aaKnown RBP9.61□□□□□ -0.87
COL4A1-204ENST00000543140 A0A087X002 238 aa9.6□□□□□ -0.87
COL4A1-204ENST00000543140 SPINK6Q6UWN8 80 aa9.6□□□□□ -0.87
COL4A1-204ENST00000543140 LRP1BQ9NZR2 4599 aa9.6□□□□□ -0.87
COL4A1-204ENST00000543140 CDK2AP2O75956 126 aa9.59□□□□□ -0.87
COL4A1-204ENST00000543140 MP68P56378 58 aa9.58□□□□□ -0.88
COL4A1-204ENST00000543140 LINC00336Q6ZUF6 198 aa9.58□□□□□ -0.88
COL4A1-204ENST00000543140 MPLKIPQ8TAP9 179 aa9.58□□□□□ -0.88
COL4A1-204ENST00000543140 LINC00208Q96KT6 92 aa9.58□□□□□ -0.88
COL4A1-204ENST00000543140 A0A1B0GVX0 72 aa9.57□□□□□ -0.88
COL4A1-204ENST00000543140 C8orf17Q9NRJ1 99 aa9.57□□□□□ -0.88
COL4A1-204ENST00000543140 H0Y9P7 68 aa9.56□□□□□ -0.88
COL4A1-204ENST00000543140 SSBP3-AS1Q7Z2R9 100 aa9.56□□□□□ -0.88
COL4A1-204ENST00000543140 ATP5EP56381 51 aaPredicted RBP9.56□□□□□ -0.88
COL4A1-204ENST00000543140 NOTCH2NLQ7Z3S9 236 aa9.56□□□□□ -0.88
COL4A1-204ENST00000543140 SMIM26A0A096LP01 95 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms