RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 H7BZZ5 65 aa6.56□□□□□ -1.36
TRAF1-202ENST00000540010 LINC00588Q9Y4M8 146 aa6.56□□□□□ -1.36
TRAF1-202ENST00000540010 NUPR2A6NF83 97 aa6.55□□□□□ -1.36
TRAF1-202ENST00000540010 KLKP1Q107X0 134 aa6.55□□□□□ -1.36
TRAF1-202ENST00000540010 LINC00336Q6ZUF6 198 aa6.55□□□□□ -1.36
TRAF1-202ENST00000540010 SPINK1P00995 79 aa6.54□□□□□ -1.36
TRAF1-202ENST00000540010 Q8N377 158 aa6.54□□□□□ -1.36
TRAF1-202ENST00000540010 SPAG11AQ6PDA7 123 aa6.53□□□□□ -1.36
TRAF1-202ENST00000540010 LINC01600Q96MT4 127 aa6.53□□□□□ -1.36
TRAF1-202ENST00000540010 EPM2AB3EWF7 344 aa6.52□□□□□ -1.37
TRAF1-202ENST00000540010 MOBPQ13875 183 aa6.52□□□□□ -1.37
TRAF1-202ENST00000540010 C15orf56Q8N910 161 aa6.52□□□□□ -1.37
TRAF1-202ENST00000540010 DNAH10OSP0CZ25 163 aa6.52□□□□□ -1.37
TRAF1-202ENST00000540010 IGLV5-52A0A0A0MRZ9 124 aa6.52□□□□□ -1.37
TRAF1-202ENST00000540010 KCNQ1DNQ9H478 68 aa6.51□□□□□ -1.37
TRAF1-202ENST00000540010 A0A1B0GW54 56 aa6.5□□□□□ -1.37
TRAF1-202ENST00000540010 A8MUN3 132 aa6.5□□□□□ -1.37
TRAF1-202ENST00000540010 LIMD2Q9BT23 127 aa6.5□□□□□ -1.37
TRAF1-202ENST00000540010 IGLV1-50A0A075B6I6 118 aa6.49□□□□□ -1.37
TRAF1-202ENST00000540010 TRAV22A0A0B4J277 110 aa6.49□□□□□ -1.37
TRAF1-202ENST00000540010 CYSTM1Q9H1C7 97 aa6.49□□□□□ -1.37
TRAF1-202ENST00000540010 OBSCN-AS1Q96MR7 158 aa6.48□□□□□ -1.37
TRAF1-202ENST00000540010 IGKV2D-30A0A075B6S6 120 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 IGKV2-30P06310 120 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 C16orf90A8MZG2 172 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 STAB2Q8WWQ8 2551 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 ERC2-IT1O76042 136 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 IGFL1Q6UW32 110 aa6.47□□□□□ -1.37
TRAF1-202ENST00000540010 A0A1W2PNM2 257 aa6.46□□□□□ -1.38
TRAF1-202ENST00000540010 CASC10Q5T4H9 136 aa6.46□□□□□ -1.38
TRAF1-202ENST00000540010 KRTAP26-1Q6PEX3 210 aa6.46□□□□□ -1.38
TRAF1-202ENST00000540010 Q8NDZ9 215 aa6.45□□□□□ -1.38
TRAF1-202ENST00000540010 K7ERS5 55 aa6.44□□□□□ -1.38
TRAF1-202ENST00000540010 C1orf134Q5TEV5 83 aa6.43□□□□□ -1.38
TRAF1-202ENST00000540010 TP53AIP1Q9HCN2 124 aa6.43□□□□□ -1.38
TRAF1-202ENST00000540010 SPACA4Q8TDM5 124 aa6.42□□□□□ -1.38
TRAF1-202ENST00000540010 A8MWP4 228 aa6.41□□□□□ -1.38
TRAF1-202ENST00000540010 APLNQ9ULZ1 77 aa6.4□□□□□ -1.38
TRAF1-202ENST00000540010 IGLV8-61A0A075B6I0 122 aa6.4□□□□□ -1.39
TRAF1-202ENST00000540010 PRR15Q8IV56 129 aa6.39□□□□□ -1.39
TRAF1-202ENST00000540010 NBDYA0A0U1RRE5 68 aa6.39□□□□□ -1.39
TRAF1-202ENST00000540010 A0A1B0GU69 56 aa6.39□□□□□ -1.39
TRAF1-202ENST00000540010 H3BPC8 53 aa6.39□□□□□ -1.39
TRAF1-202ENST00000540010 COA5Q86WW8 74 aa6.38□□□□□ -1.39
TRAF1-202ENST00000540010 ANAPC11Q9NYG5 84 aa6.38□□□□□ -1.39
TRAF1-202ENST00000540010 ACYP2P14621 99 aa6.37□□□□□ -1.39
TRAF1-202ENST00000540010 OCR1Q9BZK8 76 aa6.36□□□□□ -1.39
TRAF1-202ENST00000540010 IGLV5-48A0A075B6I7 105 aa6.36□□□□□ -1.39
TRAF1-202ENST00000540010 KRTAP1-5Q9BYS1 174 aa6.35□□□□□ -1.39
TRAF1-202ENST00000540010 ANK2Q01484 3957 aa6.35□□□□□ -1.39
TRAF1-202ENST00000540010 RTL8CO15255 209 aa6.35□□□□□ -1.39
TRAF1-202ENST00000540010 CMYA5Q8N3K9 4069 aa6.35□□□□□ -1.39
TRAF1-202ENST00000540010 C7orf65Q6ZTY9 151 aa6.34□□□□□ -1.39
TRAF1-202ENST00000540010 MRPL34Q9BQ48 92 aaKnown RBP6.34□□□□□ -1.39
TRAF1-202ENST00000540010 TLX1NBP0CAT3 122 aa6.34□□□□□ -1.4
TRAF1-202ENST00000540010 ATP11AUNQ6ZP68 121 aa6.33□□□□□ -1.4
TRAF1-202ENST00000540010 LINC00313P59037 77 aa6.32□□□□□ -1.4
TRAF1-202ENST00000540010 DSCR10P59022 87 aa6.32□□□□□ -1.4
TRAF1-202ENST00000540010 C8orf17Q9NRJ1 99 aa6.31□□□□□ -1.4
TRAF1-202ENST00000540010 Q5XG85 94 aa6.3□□□□□ -1.4
TRAF1-202ENST00000540010 C9orf163Q8N9P6 203 aa6.3□□□□□ -1.4
TRAF1-202ENST00000540010 PLA2G2DQ9UNK4 145 aa6.3□□□□□ -1.4
TRAF1-202ENST00000540010 OXTP01178 125 aa6.29□□□□□ -1.4
TRAF1-202ENST00000540010 DNAH3Q8TD57 4116 aa6.29□□□□□ -1.4
TRAF1-202ENST00000540010 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
TRAF1-202ENST00000540010 FLG2Q5D862 2391 aaPredicted RBP6.29□□□□□ -1.4
TRAF1-202ENST00000540010 HUWE1Q7Z6Z7 4374 aaKnown RBP6.29□□□□□ -1.4
TRAF1-202ENST00000540010 FAM229BQ4G0N7 80 aa6.29□□□□□ -1.4
TRAF1-202ENST00000540010 FP248Q71RG6 208 aaPredicted RBP6.29□□□□□ -1.4
TRAF1-202ENST00000540010 DMBT1Q9UGM3 2413 aaPredicted RBP6.28□□□□□ -1.4
TRAF1-202ENST00000540010 A0A1B0GVX0 72 aa6.26□□□□□ -1.41
TRAF1-202ENST00000540010 CNBPP62633 177 aaKnown RBP6.26□□□□□ -1.41
TRAF1-202ENST00000540010 CYP4F30PQ9H0H9 118 aa6.26□□□□□ -1.41
TRAF1-202ENST00000540010 TENM2Q9NT68 2774 aa6.25□□□□□ -1.41
TRAF1-202ENST00000540010 COL7A1Q02388 2944 aa6.25□□□□□ -1.41
TRAF1-202ENST00000540010 SPRR4Q96PI1 79 aa6.25□□□□□ -1.41
TRAF1-202ENST00000540010 Q96NJ1 140 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 IGLV5-37A0A075B6J1 123 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 ZNF861PO60384 105 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 PRR26Q8N8Z3 221 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 WWC2-AS2Q96NR7 200 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 FAM229AH3BQW9 127 aa6.24□□□□□ -1.41
TRAF1-202ENST00000540010 TYMSOSQ8TAI1 123 aa6.23□□□□□ -1.41
TRAF1-202ENST00000540010 PSORS1C2Q9UIG4 136 aa6.23□□□□□ -1.41
TRAF1-202ENST00000540010 A0A087WTM6 91 aa6.21□□□□□ -1.42
TRAF1-202ENST00000540010 PLA2G1BP04054 148 aaKnown RBP6.21□□□□□ -1.42
TRAF1-202ENST00000540010 C8orf87E5RJ46 101 aa6.21□□□□□ -1.42
TRAF1-202ENST00000540010 KRTAP7-1Q8IUC3 87 aa6.2□□□□□ -1.42
TRAF1-202ENST00000540010 SPANXA2-OT1Q8N9U9 137 aa6.19□□□□□ -1.42
TRAF1-202ENST00000540010 UQCR11O14957 56 aa6.18□□□□□ -1.42
TRAF1-202ENST00000540010 DNAH9Q9NYC9 4486 aa6.18□□□□□ -1.42
TRAF1-202ENST00000540010 Q1T7F1 81 aa6.18□□□□□ -1.42
TRAF1-202ENST00000540010 SPRR1AP35321 89 aa6.17□□□□□ -1.42
TRAF1-202ENST00000540010 Q6ZRN7 208 aaPredicted RBP6.17□□□□□ -1.42
TRAF1-202ENST00000540010 SSBP3-AS1Q7Z2R9 100 aa6.16□□□□□ -1.42
TRAF1-202ENST00000540010 MEGF8Q7Z7M0 2845 aa6.15□□□□□ -1.42
TRAF1-202ENST00000540010 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.15□□□□□ -1.42
TRAF1-202ENST00000540010 KRTAP4-16G5E9R7 235 aaPredicted RBP6.15□□□□□ -1.43
TRAF1-202ENST00000540010 KTN1-AS1Q86SY8 53 aa6.15□□□□□ -1.43
TRAF1-202ENST00000540010 MIR22HGQ0VDD5 57 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms