RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ERC2-IT1O76042 136 aa4.17□□□□□ -1.74
USP28-206ENST00000538224 SPRR1BP22528 89 aa4.17□□□□□ -1.74
USP28-206ENST00000538224 UBE2AP49459 152 aa4.17□□□□□ -1.74
USP28-206ENST00000538224 ATP5EP56381 51 aaPredicted RBP4.17□□□□□ -1.74
USP28-206ENST00000538224 HIGD2AQ9BW72 106 aa4.17□□□□□ -1.74
USP28-206ENST00000538224 DNAH10Q8IVF4 4471 aa4.17□□□□□ -1.74
USP28-206ENST00000538224 A0A087WTM6 91 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 A0A1W2PNM2 257 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 CHTF8P0CG12 524 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 PRLHP81277 87 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 CD164Q04900 197 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 PHF5AQ7RTV0 110 aaKnown RBP4.16□□□□□ -1.74
USP28-206ENST00000538224 SMIM29Q86T20 159 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 SPACA4Q8TDM5 124 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 LINC00476Q8WZB0 136 aa4.16□□□□□ -1.74
USP28-206ENST00000538224 IGKV4-1P06312 121 aa4.15□□□□□ -1.75
USP28-206ENST00000538224 SCXQ7RTU7 201 aa4.15□□□□□ -1.75
USP28-206ENST00000538224 ZNF706Q9Y5V0 76 aaPredicted RBP4.15□□□□□ -1.75
USP28-206ENST00000538224 RTL8CO15255 209 aa4.14□□□□□ -1.75
USP28-206ENST00000538224 IGFL1Q6UW32 110 aa4.14□□□□□ -1.75
USP28-206ENST00000538224 Q6ZR54 194 aa4.14□□□□□ -1.75
USP28-206ENST00000538224 DNAH7Q8WXX0 4024 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 NDUFC1O43677 76 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 RPL37AP61513 92 aaKnown RBP4.13□□□□□ -1.75
USP28-206ENST00000538224 KLKP1Q107X0 134 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 PMAIP1Q13794 54 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 KRTAP21-3Q3LHN1 58 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 CYSTM1Q9H1C7 97 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 CSMD3Q7Z407 3707 aa4.13□□□□□ -1.75
USP28-206ENST00000538224 MEGF8Q7Z7M0 2845 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 LCE2BO14633 110 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 C1orf134Q5TEV5 83 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 KRTAP13-1Q8IUC0 172 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 PRR15Q8IV56 129 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 C20orf197Q8N268 126 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 LYSTQ99698 3801 aa4.12□□□□□ -1.75
USP28-206ENST00000538224 TENM2Q9NT68 2774 aa4.11□□□□□ -1.75
USP28-206ENST00000538224 PLAC8Q9NZF1 115 aa4.11□□□□□ -1.75
USP28-206ENST00000538224 PRKDCP78527 4128 aaKnown RBP4.11□□□□□ -1.75
USP28-206ENST00000538224 DNAH17Q9UFH2 4485 aa4.1□□□□□ -1.75
USP28-206ENST00000538224 STARD9Q9P2P6 4700 aa4.1□□□□□ -1.75
USP28-206ENST00000538224 IGLV5-52A0A0A0MRZ9 124 aa4.1□□□□□ -1.75
USP28-206ENST00000538224 FP248Q71RG6 208 aaPredicted RBP4.1□□□□□ -1.75
USP28-206ENST00000538224 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.1□□□□□ -1.75
USP28-206ENST00000538224 A0A087WSZ3 146 aa4.09□□□□□ -1.75
USP28-206ENST00000538224 LINC00483Q53H64 154 aa4.09□□□□□ -1.75
USP28-206ENST00000538224 KRTAP11-1Q8IUC1 163 aa4.09□□□□□ -1.75
USP28-206ENST00000538224 Q8N9L7 120 aa4.09□□□□□ -1.75
USP28-206ENST00000538224 BRK1Q8WUW1 75 aa4.09□□□□□ -1.75
USP28-206ENST00000538224 HCG22E2RYF7 251 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 PANO1I0J062 215 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 DSCR10P59022 87 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 TMEM254Q8TBM7 123 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 WWC2-AS2Q96NR7 200 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 OCR1Q9BZK8 76 aa4.08□□□□□ -1.76
USP28-206ENST00000538224 DNAH6Q9C0G6 4158 aa4.07□□□□□ -1.76
USP28-206ENST00000538224 H7BZZ5 65 aa4.07□□□□□ -1.76
USP28-206ENST00000538224 K7EQZ3 153 aa4.07□□□□□ -1.76
USP28-206ENST00000538224 LY6G6CO95867 125 aa4.07□□□□□ -1.76
USP28-206ENST00000538224 A0A0U1RQV1 116 aa4.06□□□□□ -1.76
USP28-206ENST00000538224 ZNF861PO60384 105 aa4.06□□□□□ -1.76
USP28-206ENST00000538224 C4orf48Q5BLP8 95 aa4.06□□□□□ -1.76
USP28-206ENST00000538224 PSORS1C2Q9UIG4 136 aa4.06□□□□□ -1.76
USP28-206ENST00000538224 DNAH2Q9P225 4427 aa4.06□□□□□ -1.76
USP28-206ENST00000538224 LCE6AA0A183 80 aa4.05□□□□□ -1.76
USP28-206ENST00000538224 A8MWP4 228 aa4.05□□□□□ -1.76
USP28-206ENST00000538224 ALMS1Q8TCU4 4167 aa4.05□□□□□ -1.76
USP28-206ENST00000538224 NDUFB1O75438 58 aa4.04□□□□□ -1.76
USP28-206ENST00000538224 LINC00472Q9H8W2 130 aa4.04□□□□□ -1.76
USP28-206ENST00000538224 SNURFQ9Y675 71 aa4.04□□□□□ -1.76
USP28-206ENST00000538224 IGLV9-49A0A0B4J1Y8 123 aa4.03□□□□□ -1.76
USP28-206ENST00000538224 FBN3Q75N90 2809 aa4.03□□□□□ -1.76
USP28-206ENST00000538224 DNHD1Q96M86 4753 aa4.02□□□□□ -1.77
USP28-206ENST00000538224 H3BPC8 53 aa4.02□□□□□ -1.77
USP28-206ENST00000538224 IGLV7-43P04211 117 aa4.02□□□□□ -1.77
USP28-206ENST00000538224 FAM30AQ9NZY2 134 aa4.02□□□□□ -1.77
USP28-206ENST00000538224 A0A0G2JQZ4 141 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 MP68P56378 58 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 MOBPQ13875 183 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 CASC2Q6XLA1 102 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 KRTAP4-8Q9BYQ9 185 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 DNAH8Q96JB1 4490 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 HECTD4Q9Y4D8 3996 aa4.01□□□□□ -1.77
USP28-206ENST00000538224 KRTAP29-1A8MX34 341 aaPredicted RBP4□□□□□ -1.77
USP28-206ENST00000538224 CDK2AP2O75956 126 aa4□□□□□ -1.77
USP28-206ENST00000538224 WFDC13Q8IUB5 93 aa4□□□□□ -1.77
USP28-206ENST00000538224 TGP01266 2768 aa3.99□□□□□ -1.77
USP28-206ENST00000538224 DEFB116Q30KQ4 102 aa3.99□□□□□ -1.77
USP28-206ENST00000538224 Q6ZSA8 131 aa3.99□□□□□ -1.77
USP28-206ENST00000538224 SSBP3-AS1Q7Z2R9 100 aa3.99□□□□□ -1.77
USP28-206ENST00000538224 NDUFS5O43920 106 aa3.98□□□□□ -1.77
USP28-206ENST00000538224 Q1T7F1 81 aa3.98□□□□□ -1.77
USP28-206ENST00000538224 LCE2AQ5TA79 106 aaPredicted RBP3.98□□□□□ -1.77
USP28-206ENST00000538224 CIRBP-AS1Q8TBR5 109 aa3.98□□□□□ -1.77
USP28-206ENST00000538224 ZCCHC13Q8WW36 166 aaKnown RBP3.98□□□□□ -1.77
USP28-206ENST00000538224 TP53AIP1Q9HCN2 124 aa3.98□□□□□ -1.77
USP28-206ENST00000538224 SRRM2Q9UQ35 2752 aaKnown RBP3.97□□□□□ -1.77
USP28-206ENST00000538224 MMP24-AS1A0A0U1RRL7 71 aa3.97□□□□□ -1.77
USP28-206ENST00000538224 hDV103S1A0JD37 113 aa3.97□□□□□ -1.77
USP28-206ENST00000538224 KRTAP10-2P60368 255 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms