RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MEGF8Q7Z7M0 2845 aa6.89□□□□□ -1.31
CLIP1-210ENST00000538120 F8WEM9 126 aa6.88□□□□□ -1.31
CLIP1-210ENST00000538120 PDE6GP18545 87 aa6.88□□□□□ -1.31
CLIP1-210ENST00000538120 IGLV5-37A0A075B6J1 123 aa6.88□□□□□ -1.31
CLIP1-210ENST00000538120 NKAPP1Q8N9T2 125 aa6.88□□□□□ -1.31
CLIP1-210ENST00000538120 KCNQ1DNQ9H478 68 aa6.87□□□□□ -1.31
CLIP1-210ENST00000538120 BCE1O60756 84 aa6.87□□□□□ -1.31
CLIP1-210ENST00000538120 CNBPP62633 177 aaKnown RBP6.86□□□□□ -1.31
CLIP1-210ENST00000538120 TENM2Q9NT68 2774 aa6.85□□□□□ -1.31
CLIP1-210ENST00000538120 NBDYA0A0U1RRE5 68 aa6.85□□□□□ -1.31
CLIP1-210ENST00000538120 PSCAO43653 123 aa6.85□□□□□ -1.31
CLIP1-210ENST00000538120 LCE3BQ5TA77 95 aa6.85□□□□□ -1.31
CLIP1-210ENST00000538120 H3BQ85 93 aa6.84□□□□□ -1.31
CLIP1-210ENST00000538120 IGLV1-50A0A075B6I6 118 aa6.84□□□□□ -1.32
CLIP1-210ENST00000538120 KRTAP19-4Q3LI73 84 aa6.84□□□□□ -1.32
CLIP1-210ENST00000538120 LRCOL1A6NCL2 159 aa6.83□□□□□ -1.32
CLIP1-210ENST00000538120 RPL37AP8A6NKH3 93 aa6.83□□□□□ -1.32
CLIP1-210ENST00000538120 BPY2O14599 106 aa6.83□□□□□ -1.32
CLIP1-210ENST00000538120 NREPQ16612 68 aa6.83□□□□□ -1.32
CLIP1-210ENST00000538120 Q6ZRN7 208 aaPredicted RBP6.83□□□□□ -1.32
CLIP1-210ENST00000538120 KRTAP4-16G5E9R7 235 aaPredicted RBP6.83□□□□□ -1.32
CLIP1-210ENST00000538120 C3orf84H3BNL1 204 aa6.83□□□□□ -1.32
CLIP1-210ENST00000538120 A0A096LNI7 61 aa6.82□□□□□ -1.32
CLIP1-210ENST00000538120 NDUFS5O43920 106 aa6.82□□□□□ -1.32
CLIP1-210ENST00000538120 DEFB105AQ8NG35 78 aa6.82□□□□□ -1.32
CLIP1-210ENST00000538120 IGKV4-1P06312 121 aa6.82□□□□□ -1.32
CLIP1-210ENST00000538120 SPRR1AP35321 89 aa6.82□□□□□ -1.32
CLIP1-210ENST00000538120 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.81□□□□□ -1.32
CLIP1-210ENST00000538120 C16orf90A8MZG2 172 aa6.81□□□□□ -1.32
CLIP1-210ENST00000538120 A0A1W2PNN7 141 aa6.8□□□□□ -1.32
CLIP1-210ENST00000538120 C14orf177Q52M58 125 aa6.8□□□□□ -1.32
CLIP1-210ENST00000538120 TMEM254Q8TBM7 123 aa6.8□□□□□ -1.32
CLIP1-210ENST00000538120 LINC00474Q9P2X8 69 aa6.8□□□□□ -1.32
CLIP1-210ENST00000538120 ATP5EP56381 51 aaPredicted RBP6.79□□□□□ -1.32
CLIP1-210ENST00000538120 SEC61BP60468 96 aaKnown RBP6.79□□□□□ -1.32
CLIP1-210ENST00000538120 IGKV2-24A0A0C4DH68 120 aa6.78□□□□□ -1.32
CLIP1-210ENST00000538120 Q9BRP9 147 aa6.78□□□□□ -1.32
CLIP1-210ENST00000538120 Q6ZRX8 168 aa6.78□□□□□ -1.32
CLIP1-210ENST00000538120 Q8N377 158 aa6.78□□□□□ -1.32
CLIP1-210ENST00000538120 DNAH2Q9P225 4427 aa6.78□□□□□ -1.32
CLIP1-210ENST00000538120 C9orf163Q8N9P6 203 aa6.77□□□□□ -1.33
CLIP1-210ENST00000538120 OCR1Q9BZK8 76 aa6.77□□□□□ -1.33
CLIP1-210ENST00000538120 ETDCA0A1B0GVM5 59 aa6.76□□□□□ -1.33
CLIP1-210ENST00000538120 CHTF8P0CG12 524 aa6.76□□□□□ -1.33
CLIP1-210ENST00000538120 FAM229BQ4G0N7 80 aa6.76□□□□□ -1.33
CLIP1-210ENST00000538120 H0Y9J4 135 aa6.75□□□□□ -1.33
CLIP1-210ENST00000538120 DHRS4-AS1Q9P1J3 65 aa6.75□□□□□ -1.33
CLIP1-210ENST00000538120 KMT2AQ03164 3969 aa6.75□□□□□ -1.33
CLIP1-210ENST00000538120 NDUFC1O43677 76 aa6.75□□□□□ -1.33
CLIP1-210ENST00000538120 HIGD2AQ9BW72 106 aa6.75□□□□□ -1.33
CLIP1-210ENST00000538120 KRTAP21-3Q3LHN1 58 aa6.74□□□□□ -1.33
CLIP1-210ENST00000538120 REG3GQ6UW15 175 aa6.74□□□□□ -1.33
CLIP1-210ENST00000538120 Q6ZR54 194 aa6.74□□□□□ -1.33
CLIP1-210ENST00000538120 FBN3Q75N90 2809 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 ERC2-IT1O76042 136 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 KRTAP11-1Q8IUC1 163 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 ST20-AS1Q8NBB2 130 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 DNAH17Q9UFH2 4485 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 A0A1W2PNM2 257 aa6.73□□□□□ -1.33
CLIP1-210ENST00000538120 PHF5AQ7RTV0 110 aaKnown RBP6.73□□□□□ -1.33
CLIP1-210ENST00000538120 IGLV5-48A0A075B6I7 105 aa6.72□□□□□ -1.33
CLIP1-210ENST00000538120 A8MUN3 132 aa6.72□□□□□ -1.33
CLIP1-210ENST00000538120 PANO1I0J062 215 aa6.72□□□□□ -1.33
CLIP1-210ENST00000538120 SMIM29Q86T20 159 aa6.72□□□□□ -1.33
CLIP1-210ENST00000538120 HECTD4Q9Y4D8 3996 aa6.72□□□□□ -1.33
CLIP1-210ENST00000538120 A0A087WTM6 91 aa6.71□□□□□ -1.33
CLIP1-210ENST00000538120 LCA10Q71F78 164 aa6.71□□□□□ -1.33
CLIP1-210ENST00000538120 KRTAP9-9Q9BYP9 154 aa6.71□□□□□ -1.33
CLIP1-210ENST00000538120 KRTAP9-4Q9BYQ2 154 aa6.71□□□□□ -1.33
CLIP1-210ENST00000538120 UBE2BP63146 152 aa6.71□□□□□ -1.34
CLIP1-210ENST00000538120 DNAH6Q9C0G6 4158 aa6.7□□□□□ -1.34
CLIP1-210ENST00000538120 LCE4AQ5TA78 99 aa6.7□□□□□ -1.34
CLIP1-210ENST00000538120 MPLKIPQ8TAP9 179 aa6.7□□□□□ -1.34
CLIP1-210ENST00000538120 C1orf137Q5JT78 98 aa6.69□□□□□ -1.34
CLIP1-210ENST00000538120 A0A0G2JQZ4 141 aa6.69□□□□□ -1.34
CLIP1-210ENST00000538120 FUSP35637 526 aaKnown RBP eCLIP6.69□□□□□ -1.34
CLIP1-210ENST00000538120 PRLHP81277 87 aa6.68□□□□□ -1.34
CLIP1-210ENST00000538120 CDK2AP2O75956 126 aa6.67□□□□□ -1.34
CLIP1-210ENST00000538120 DSCR10P59022 87 aa6.66□□□□□ -1.34
CLIP1-210ENST00000538120 SPACA4Q8TDM5 124 aa6.66□□□□□ -1.34
CLIP1-210ENST00000538120 K7EQZ3 153 aa6.66□□□□□ -1.34
CLIP1-210ENST00000538120 MP68P56378 58 aa6.66□□□□□ -1.34
CLIP1-210ENST00000538120 Q8NBF4 154 aa6.66□□□□□ -1.34
CLIP1-210ENST00000538120 LINC00313P59037 77 aa6.65□□□□□ -1.34
CLIP1-210ENST00000538120 ALMS1Q8TCU4 4167 aa6.64□□□□□ -1.35
CLIP1-210ENST00000538120 RTL8CO15255 209 aa6.64□□□□□ -1.35
CLIP1-210ENST00000538120 LY6G6CO95867 125 aa6.64□□□□□ -1.35
CLIP1-210ENST00000538120 C1orf134Q5TEV5 83 aa6.64□□□□□ -1.35
CLIP1-210ENST00000538120 DEFB116Q30KQ4 102 aa6.63□□□□□ -1.35
CLIP1-210ENST00000538120 SPRR4Q96PI1 79 aa6.63□□□□□ -1.35
CLIP1-210ENST00000538120 LINC00476Q8WZB0 136 aa6.62□□□□□ -1.35
CLIP1-210ENST00000538120 DNAH11Q96DT5 4516 aa6.62□□□□□ -1.35
CLIP1-210ENST00000538120 WWC2-AS2Q96NR7 200 aa6.62□□□□□ -1.35
CLIP1-210ENST00000538120 DNAH8Q96JB1 4490 aa6.62□□□□□ -1.35
CLIP1-210ENST00000538120 IGLV9-49A0A0B4J1Y8 123 aa6.61□□□□□ -1.35
CLIP1-210ENST00000538120 LCE6AA0A183 80 aa6.61□□□□□ -1.35
CLIP1-210ENST00000538120 C7orf65Q6ZTY9 151 aa6.61□□□□□ -1.35
CLIP1-210ENST00000538120 ZNF706Q9Y5V0 76 aaPredicted RBP6.61□□□□□ -1.35
CLIP1-210ENST00000538120 KRTAP13-1Q8IUC0 172 aa6.6□□□□□ -1.35
CLIP1-210ENST00000538120 TGP01266 2768 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms