RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 CNBPP62633 177 aaKnown RBP7.25□□□□□ -1.25
SYNE1-234ENST00000536990 MPLKIPQ8TAP9 179 aa7.25□□□□□ -1.25
SYNE1-234ENST00000536990 MGAM2Q2M2H8 2515 aa7.25□□□□□ -1.25
SYNE1-234ENST00000536990 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-234ENST00000536990 hDV103S1A0JD37 113 aa7.25□□□□□ -1.25
SYNE1-234ENST00000536990 DNAH10Q8IVF4 4471 aa7.25□□□□□ -1.25
SYNE1-234ENST00000536990 PRLHP81277 87 aa7.25□□□□□ -1.25
SYNE1-234ENST00000536990 DEFB116Q30KQ4 102 aa7.23□□□□□ -1.25
SYNE1-234ENST00000536990 APLNQ9ULZ1 77 aa7.22□□□□□ -1.25
SYNE1-234ENST00000536990 STAB2Q8WWQ8 2551 aa7.22□□□□□ -1.25
SYNE1-234ENST00000536990 A0A087WSZ3 146 aa7.22□□□□□ -1.25
SYNE1-234ENST00000536990 C14orf177Q52M58 125 aa7.21□□□□□ -1.25
SYNE1-234ENST00000536990 C1orf64Q8NEQ6 169 aa7.21□□□□□ -1.25
SYNE1-234ENST00000536990 DNAH9Q9NYC9 4486 aa7.21□□□□□ -1.26
SYNE1-234ENST00000536990 WFDC13Q8IUB5 93 aa7.19□□□□□ -1.26
SYNE1-234ENST00000536990 LYSTQ99698 3801 aa7.19□□□□□ -1.26
SYNE1-234ENST00000536990 COL7A1Q02388 2944 aa7.19□□□□□ -1.26
SYNE1-234ENST00000536990 KRTAP11-1Q8IUC1 163 aa7.19□□□□□ -1.26
SYNE1-234ENST00000536990 BRK1Q8WUW1 75 aa7.19□□□□□ -1.26
SYNE1-234ENST00000536990 KRTAP29-1A8MX34 341 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-234ENST00000536990 CYP4F30PQ9H0H9 118 aa7.18□□□□□ -1.26
SYNE1-234ENST00000536990 CHTF8P0CG12 524 aa7.18□□□□□ -1.26
SYNE1-234ENST00000536990 RPL37AP61513 92 aaKnown RBP7.18□□□□□ -1.26
SYNE1-234ENST00000536990 UBE2AP49459 152 aa7.17□□□□□ -1.26
SYNE1-234ENST00000536990 PHF5AQ7RTV0 110 aaKnown RBP7.17□□□□□ -1.26
SYNE1-234ENST00000536990 LRCOL1A6NCL2 159 aa7.17□□□□□ -1.26
SYNE1-234ENST00000536990 SPRR1BP22528 89 aa7.16□□□□□ -1.26
SYNE1-234ENST00000536990 Q1T7F1 81 aa7.15□□□□□ -1.26
SYNE1-234ENST00000536990 SRRM2Q9UQ35 2752 aaKnown RBP7.15□□□□□ -1.26
SYNE1-234ENST00000536990 C9orf163Q8N9P6 203 aa7.15□□□□□ -1.27
SYNE1-234ENST00000536990 H0Y9J4 135 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 NDUFB1O75438 58 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 PRR4Q16378 134 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 B9D2Q9BPU9 175 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 DYNC2H1Q8NCM8 4307 aaKnown RBP7.14□□□□□ -1.27
SYNE1-234ENST00000536990 TRAV22A0A0B4J277 110 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 MP68P56378 58 aa7.14□□□□□ -1.27
SYNE1-234ENST00000536990 PRR15Q8IV56 129 aa7.13□□□□□ -1.27
SYNE1-234ENST00000536990 LINC00472Q9H8W2 130 aa7.13□□□□□ -1.27
SYNE1-234ENST00000536990 NBDYA0A0U1RRE5 68 aa7.12□□□□□ -1.27
SYNE1-234ENST00000536990 PKIGQ9Y2B9 76 aa7.12□□□□□ -1.27
SYNE1-234ENST00000536990 LINC00208Q96KT6 92 aa7.12□□□□□ -1.27
SYNE1-234ENST00000536990 CASC2Q6XLA1 102 aa7.11□□□□□ -1.27
SYNE1-234ENST00000536990 TENM2Q9NT68 2774 aa7.11□□□□□ -1.27
SYNE1-234ENST00000536990 A8MWP4 228 aa7.11□□□□□ -1.27
SYNE1-234ENST00000536990 MDFIQ99750 246 aa7.1□□□□□ -1.27
SYNE1-234ENST00000536990 PLECQ15149 4684 aaKnown RBP7.1□□□□□ -1.27
SYNE1-234ENST00000536990 H0Y9P7 68 aa7.09□□□□□ -1.27
SYNE1-234ENST00000536990 DNAH7Q8WXX0 4024 aa7.09□□□□□ -1.27
SYNE1-234ENST00000536990 NUPR2A6NF83 97 aa7.09□□□□□ -1.27
SYNE1-234ENST00000536990 H3BPC8 53 aa7.08□□□□□ -1.28
SYNE1-234ENST00000536990 Q6ZRN7 208 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-234ENST00000536990 CSMD3Q7Z407 3707 aa7.07□□□□□ -1.28
SYNE1-234ENST00000536990 PANO1I0J062 215 aa7.07□□□□□ -1.28
SYNE1-234ENST00000536990 SPANXA2-OT1Q8N9U9 137 aa7.07□□□□□ -1.28
SYNE1-234ENST00000536990 KRTAP13-1Q8IUC0 172 aa7.06□□□□□ -1.28
SYNE1-234ENST00000536990 PSPHP1O15172 72 aa7.05□□□□□ -1.28
SYNE1-234ENST00000536990 MMP24-AS1A0A0U1RRL7 71 aa7.05□□□□□ -1.28
SYNE1-234ENST00000536990 C1orf195Q5TG92 126 aa7.02□□□□□ -1.29
SYNE1-234ENST00000536990 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-234ENST00000536990 SPACA4Q8TDM5 124 aa7.01□□□□□ -1.29
SYNE1-234ENST00000536990 Q96NJ1 140 aa7.01□□□□□ -1.29
SYNE1-234ENST00000536990 A8MUN3 132 aa7.01□□□□□ -1.29
SYNE1-234ENST00000536990 V9GYY9 64 aa7.01□□□□□ -1.29
SYNE1-234ENST00000536990 VPS13DQ5THJ4 4388 aa7□□□□□ -1.29
SYNE1-234ENST00000536990 ASB16-AS1Q495Z4 193 aa7□□□□□ -1.29
SYNE1-234ENST00000536990 A0A087WTM6 91 aa6.99□□□□□ -1.29
SYNE1-234ENST00000536990 Q8N9P0 234 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-234ENST00000536990 IGLV9-49A0A0B4J1Y8 123 aa6.97□□□□□ -1.29
SYNE1-234ENST00000536990 Q5VV11 94 aa6.97□□□□□ -1.29
SYNE1-234ENST00000536990 LINC00483Q53H64 154 aa6.96□□□□□ -1.29
SYNE1-234ENST00000536990 STARD9Q9P2P6 4700 aa6.96□□□□□ -1.29
SYNE1-234ENST00000536990 IGLV7-46A0A075B6I9 117 aa6.95□□□□□ -1.3
SYNE1-234ENST00000536990 RTL8CO15255 209 aa6.95□□□□□ -1.3
SYNE1-234ENST00000536990 MOBPQ13875 183 aa6.95□□□□□ -1.3
SYNE1-234ENST00000536990 C8orf17Q9NRJ1 99 aa6.94□□□□□ -1.3
SYNE1-234ENST00000536990 TP53AIP1Q9HCN2 124 aa6.94□□□□□ -1.3
SYNE1-234ENST00000536990 LIMD2Q9BT23 127 aa6.93□□□□□ -1.3
SYNE1-234ENST00000536990 COA5Q86WW8 74 aa6.93□□□□□ -1.3
SYNE1-234ENST00000536990 ZNF706Q9Y5V0 76 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-234ENST00000536990 PSORS1C2Q9UIG4 136 aa6.93□□□□□ -1.3
SYNE1-234ENST00000536990 CD164Q04900 197 aa6.92□□□□□ -1.3
SYNE1-234ENST00000536990 Q6ZR54 194 aa6.92□□□□□ -1.3
SYNE1-234ENST00000536990 WWC2-AS2Q96NR7 200 aa6.92□□□□□ -1.3
SYNE1-234ENST00000536990 IGLV5-52A0A0A0MRZ9 124 aa6.91□□□□□ -1.3
SYNE1-234ENST00000536990 HECTD4Q9Y4D8 3996 aa6.91□□□□□ -1.3
SYNE1-234ENST00000536990 A8MU10 97 aa6.91□□□□□ -1.3
SYNE1-234ENST00000536990 PCOTHQ58A44 107 aa6.91□□□□□ -1.3
SYNE1-234ENST00000536990 A0A1B0GVX0 72 aa6.9□□□□□ -1.3
SYNE1-234ENST00000536990 PRKDCP78527 4128 aaKnown RBP6.9□□□□□ -1.3
SYNE1-234ENST00000536990 DNAH17Q9UFH2 4485 aa6.9□□□□□ -1.3
SYNE1-234ENST00000536990 PLAC8Q9NZF1 115 aa6.9□□□□□ -1.3
SYNE1-234ENST00000536990 IGHV6-1A0A0B4J1U7 121 aa6.89□□□□□ -1.31
SYNE1-234ENST00000536990 PRR15LQ9BU68 103 aa6.89□□□□□ -1.31
SYNE1-234ENST00000536990 ZNF861PO60384 105 aa6.89□□□□□ -1.31
SYNE1-234ENST00000536990 CHKB-CPT1BH3BT56 60 aa6.88□□□□□ -1.31
SYNE1-234ENST00000536990 DNAH2Q9P225 4427 aa6.87□□□□□ -1.31
SYNE1-234ENST00000536990 ANAPC11Q9NYG5 84 aa6.87□□□□□ -1.31
SYNE1-234ENST00000536990 KMT2AQ03164 3969 aa6.87□□□□□ -1.31
SYNE1-234ENST00000536990 DNAH8Q96JB1 4490 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms