RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 A0A1W2PNN7 141 aa8.33□□□□□ -1.08
LDLR-203ENST00000535915 APLNQ9ULZ1 77 aa8.33□□□□□ -1.08
LDLR-203ENST00000535915 CSMD3Q7Z407 3707 aa8.32□□□□□ -1.08
LDLR-203ENST00000535915 PRLHP81277 87 aa8.32□□□□□ -1.08
LDLR-203ENST00000535915 DYNC2H1Q8NCM8 4307 aaKnown RBP8.31□□□□□ -1.08
LDLR-203ENST00000535915 SMIM29Q86T20 159 aa8.31□□□□□ -1.08
LDLR-203ENST00000535915 SPRR4Q96PI1 79 aa8.31□□□□□ -1.08
LDLR-203ENST00000535915 C14orf177Q52M58 125 aa8.29□□□□□ -1.08
LDLR-203ENST00000535915 LINC00476Q8WZB0 136 aa8.29□□□□□ -1.08
LDLR-203ENST00000535915 HIGD2AQ9BW72 106 aa8.29□□□□□ -1.08
LDLR-203ENST00000535915 CHTF8P0CG12 524 aa8.28□□□□□ -1.08
LDLR-203ENST00000535915 A0A0G2JQZ4 141 aa8.27□□□□□ -1.09
LDLR-203ENST00000535915 PLECQ15149 4684 aaKnown RBP8.27□□□□□ -1.09
LDLR-203ENST00000535915 OCR1Q9BZK8 76 aa8.27□□□□□ -1.09
LDLR-203ENST00000535915 PHF5AQ7RTV0 110 aaKnown RBP8.26□□□□□ -1.09
LDLR-203ENST00000535915 SRRM2Q9UQ35 2752 aaKnown RBP8.26□□□□□ -1.09
LDLR-203ENST00000535915 IGFL1Q6UW32 110 aa8.25□□□□□ -1.09
LDLR-203ENST00000535915 B9D2Q9BPU9 175 aa8.25□□□□□ -1.09
LDLR-203ENST00000535915 PMAIP1Q13794 54 aa8.25□□□□□ -1.09
LDLR-203ENST00000535915 LRCOL1A6NCL2 159 aa8.24□□□□□ -1.09
LDLR-203ENST00000535915 DSCR10P59022 87 aa8.24□□□□□ -1.09
LDLR-203ENST00000535915 KRTAP11-1Q8IUC1 163 aa8.24□□□□□ -1.09
LDLR-203ENST00000535915 K7EQZ3 153 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 PRR15Q8IV56 129 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 UBE2AP49459 152 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 C9orf163Q8N9P6 203 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 MDFIQ99750 246 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 NBDYA0A0U1RRE5 68 aa8.22□□□□□ -1.09
LDLR-203ENST00000535915 FAM30AQ9NZY2 134 aa8.21□□□□□ -1.1
LDLR-203ENST00000535915 IGLV8-61A0A075B6I0 122 aa8.2□□□□□ -1.1
LDLR-203ENST00000535915 A0A087WSZ3 146 aa8.19□□□□□ -1.1
LDLR-203ENST00000535915 NUPR2A6NF83 97 aa8.19□□□□□ -1.1
LDLR-203ENST00000535915 DEFB116Q30KQ4 102 aa8.19□□□□□ -1.1
LDLR-203ENST00000535915 H0Y9J4 135 aa8.18□□□□□ -1.1
LDLR-203ENST00000535915 hDV103S1A0JD37 113 aa8.17□□□□□ -1.1
LDLR-203ENST00000535915 PSPHP1O15172 72 aa8.16□□□□□ -1.1
LDLR-203ENST00000535915 Q6ZRN7 208 aaPredicted RBP8.16□□□□□ -1.1
LDLR-203ENST00000535915 HCG22E2RYF7 251 aa8.15□□□□□ -1.1
LDLR-203ENST00000535915 PANO1I0J062 215 aa8.15□□□□□ -1.1
LDLR-203ENST00000535915 Q1T7F1 81 aa8.15□□□□□ -1.1
LDLR-203ENST00000535915 C1orf64Q8NEQ6 169 aa8.15□□□□□ -1.1
LDLR-203ENST00000535915 STARD9Q9P2P6 4700 aa8.15□□□□□ -1.11
LDLR-203ENST00000535915 SPRR1BP22528 89 aa8.14□□□□□ -1.11
LDLR-203ENST00000535915 VPS13DQ5THJ4 4388 aa8.13□□□□□ -1.11
LDLR-203ENST00000535915 RPL37AP61513 92 aaKnown RBP8.11□□□□□ -1.11
LDLR-203ENST00000535915 LCE6AA0A183 80 aa8.1□□□□□ -1.11
LDLR-203ENST00000535915 PRKDCP78527 4128 aaKnown RBP8.1□□□□□ -1.11
LDLR-203ENST00000535915 WFDC13Q8IUB5 93 aa8.1□□□□□ -1.11
LDLR-203ENST00000535915 TRAV22A0A0B4J277 110 aa8.1□□□□□ -1.11
LDLR-203ENST00000535915 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.1□□□□□ -1.11
LDLR-203ENST00000535915 PRR4Q16378 134 aa8.09□□□□□ -1.11
LDLR-203ENST00000535915 HECTD4Q9Y4D8 3996 aa8.09□□□□□ -1.11
LDLR-203ENST00000535915 KRTAP13-1Q8IUC0 172 aa8.08□□□□□ -1.12
LDLR-203ENST00000535915 SPACA4Q8TDM5 124 aa8.08□□□□□ -1.12
LDLR-203ENST00000535915 A0A087WTM6 91 aa8.06□□□□□ -1.12
LDLR-203ENST00000535915 CD164Q04900 197 aa8.05□□□□□ -1.12
LDLR-203ENST00000535915 KMT2AQ03164 3969 aa8.04□□□□□ -1.12
LDLR-203ENST00000535915 A8MUN3 132 aa8.04□□□□□ -1.12
LDLR-203ENST00000535915 LINC00472Q9H8W2 130 aa8.04□□□□□ -1.12
LDLR-203ENST00000535915 ZCCHC13Q8WW36 166 aaKnown RBP8.04□□□□□ -1.12
LDLR-203ENST00000535915 IGLV9-49A0A0B4J1Y8 123 aa8.03□□□□□ -1.12
LDLR-203ENST00000535915 DNAH2Q9P225 4427 aa8.03□□□□□ -1.12
LDLR-203ENST00000535915 KRTAP21-3Q3LHN1 58 aa8.03□□□□□ -1.12
LDLR-203ENST00000535915 A8MWP4 228 aa8.02□□□□□ -1.13
LDLR-203ENST00000535915 RTL8CO15255 209 aa8.02□□□□□ -1.13
LDLR-203ENST00000535915 CASC2Q6XLA1 102 aa8.02□□□□□ -1.13
LDLR-203ENST00000535915 KRTAP29-1A8MX34 341 aaPredicted RBP8.01□□□□□ -1.13
LDLR-203ENST00000535915 A8MU10 97 aa8□□□□□ -1.13
LDLR-203ENST00000535915 CYP4F30PQ9H0H9 118 aa8□□□□□ -1.13
LDLR-203ENST00000535915 FRAS1Q86XX4 4008 aa8□□□□□ -1.13
LDLR-203ENST00000535915 MEGF8Q7Z7M0 2845 aa8□□□□□ -1.13
LDLR-203ENST00000535915 DNAH17Q9UFH2 4485 aa7.99□□□□□ -1.13
LDLR-203ENST00000535915 MP68P56378 58 aa7.99□□□□□ -1.13
LDLR-203ENST00000535915 TGP01266 2768 aa7.98□□□□□ -1.13
LDLR-203ENST00000535915 FBN3Q75N90 2809 aa7.98□□□□□ -1.13
LDLR-203ENST00000535915 PSORS1C2Q9UIG4 136 aa7.98□□□□□ -1.13
LDLR-203ENST00000535915 DNAH8Q96JB1 4490 aa7.97□□□□□ -1.13
LDLR-203ENST00000535915 NDUFB1O75438 58 aa7.97□□□□□ -1.13
LDLR-203ENST00000535915 Q6ZR54 194 aa7.97□□□□□ -1.13
LDLR-203ENST00000535915 IGLV5-52A0A0A0MRZ9 124 aa7.96□□□□□ -1.13
LDLR-203ENST00000535915 CHKB-CPT1BH3BT56 60 aa7.96□□□□□ -1.13
LDLR-203ENST00000535915 LINC00483Q53H64 154 aa7.96□□□□□ -1.13
LDLR-203ENST00000535915 ZNF706Q9Y5V0 76 aaPredicted RBP7.96□□□□□ -1.13
LDLR-203ENST00000535915 Q5VV11 94 aa7.96□□□□□ -1.14
LDLR-203ENST00000535915 LINC00208Q96KT6 92 aa7.96□□□□□ -1.14
LDLR-203ENST00000535915 SPTSSBQ8NFR3 76 aa7.95□□□□□ -1.14
LDLR-203ENST00000535915 PLAC8Q9NZF1 115 aa7.94□□□□□ -1.14
LDLR-203ENST00000535915 H0Y9P7 68 aa7.94□□□□□ -1.14
LDLR-203ENST00000535915 MMP24-AS1A0A0U1RRL7 71 aa7.93□□□□□ -1.14
LDLR-203ENST00000535915 MOBPQ13875 183 aa7.93□□□□□ -1.14
LDLR-203ENST00000535915 KTN1-AS1Q86SY8 53 aa7.93□□□□□ -1.14
LDLR-203ENST00000535915 Q96NJ1 140 aa7.93□□□□□ -1.14
LDLR-203ENST00000535915 WWC2-AS2Q96NR7 200 aa7.93□□□□□ -1.14
LDLR-203ENST00000535915 ANAPC11Q9NYG5 84 aa7.92□□□□□ -1.14
LDLR-203ENST00000535915 ZNF861PO60384 105 aa7.92□□□□□ -1.14
LDLR-203ENST00000535915 C1orf134Q5TEV5 83 aa7.92□□□□□ -1.14
LDLR-203ENST00000535915 LIMD2Q9BT23 127 aa7.9□□□□□ -1.14
LDLR-203ENST00000535915 PRR15LQ9BU68 103 aa7.9□□□□□ -1.14
LDLR-203ENST00000535915 RBM12B-AS1Q9P1G2 102 aa7.9□□□□□ -1.15
LDLR-203ENST00000535915 H3BPC8 53 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms