RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SPANXN1Q5VSR9 72 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 AKAP14Q86UN6 197 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 HIST1H2BLQ99880 126 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 PRRT1Q99946 306 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 NAA38Q9BRA0 125 aaKnown RBP1.27□□□□□ -2.21
CD44-235ENST00000532339 CYSTM1Q9H1C7 97 aa1.27□□□□□ -2.21
CD44-235ENST00000532339 TRDV1A0A1B0GX56 115 aa1.26□□□□□ -2.21
CD44-235ENST00000532339 C9orf170A2RU37 121 aa1.26□□□□□ -2.21
CD44-235ENST00000532339 CRIP1P50238 77 aa1.26□□□□□ -2.21
CD44-235ENST00000532339 SCGB2B2Q4G0G5 96 aa1.26□□□□□ -2.21
CD44-235ENST00000532339 SSSCA1O60232 199 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 IFNA1P01562 189 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 CD3DP04234 171 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 G0S2P27469 103 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 CKS1BP61024 79 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 MT1XP80297 61 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 MED9Q9NWA0 146 aa1.25□□□□□ -2.21
CD44-235ENST00000532339 TAX1BP3O14907 124 aa1.24□□□□□ -2.21
CD44-235ENST00000532339 CXCL1P09341 107 aa1.24□□□□□ -2.21
CD44-235ENST00000532339 BAALC-AS2P0C853 105 aa1.24□□□□□ -2.21
CD44-235ENST00000532339 C5orf17Q8NAS9 161 aa1.24□□□□□ -2.21
CD44-235ENST00000532339 NHP2Q9NX24 153 aaKnown RBP1.24□□□□□ -2.21
CD44-235ENST00000532339 FAM236AA0A1B0GUQ0 79 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 UBE2L5PA0A1B0GUS4 154 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 FAM236BA0A1B0GV22 79 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 I3L3M4 83 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 AKR1C8PQ5T2L2 129 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 SMIM20Q8N5G0 67 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 Q96NJ1 140 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 NPCDR1Q9BY65 106 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 GSKIPQ9P0R6 139 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 SS18L2Q9UHA2 77 aa1.23□□□□□ -2.21
CD44-235ENST00000532339 C7orf77A4D0Y5 90 aa1.22□□□□□ -2.21
CD44-235ENST00000532339 F8VRH5 84 aa1.22□□□□□ -2.21
CD44-235ENST00000532339 NDUFC2O95298 119 aa1.22□□□□□ -2.21
CD44-235ENST00000532339 SNX29P2Q8IUI4 249 aa1.22□□□□□ -2.21
CD44-235ENST00000532339 SDC2P34741 201 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.21□□□□□ -2.22
CD44-235ENST00000532339 SOSTDC1Q6X4U4 206 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 Q6ZUT4 128 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 Q8IZM0 81 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 TMEM229BQ8NBD8 167 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 OR13C6PQ8NH95 151 aa1.21□□□□□ -2.22
CD44-235ENST00000532339 TRAV12-1A0A0B4J245 112 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 IGKV3D-7A0A0C4DH55 119 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 ETDCA0A1B0GVM5 59 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 SMIM31A0A1B0GVY4 71 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 S100A11P31949 105 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 SPRR1AP35321 89 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 VBP1P61758 197 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 ALKAL2Q6UX46 152 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 C8orf59Q8N0T1 100 aaPredicted RBP1.2□□□□□ -2.22
CD44-235ENST00000532339 SFT2D1Q8WV19 159 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 RPL39LQ96EH5 51 aaKnown RBP1.2□□□□□ -2.22
CD44-235ENST00000532339 TOMM7Q9P0U1 55 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 ZFP30Q9Y2G7 519 aa1.2□□□□□ -2.22
CD44-235ENST00000532339 TMEM256-PLSCR3K7ERE1 68 aa1.19□□□□□ -2.22
CD44-235ENST00000532339 TMEM128Q5BJH2 165 aa1.19□□□□□ -2.22
CD44-235ENST00000532339 ANP32BQ92688 251 aaKnown RBP1.19□□□□□ -2.22
CD44-235ENST00000532339 TIMM17BO60830 172 aa1.18□□□□□ -2.22
CD44-235ENST00000532339 TRIQKQ629K1 86 aa1.18□□□□□ -2.22
CD44-235ENST00000532339 TEX261Q6UWH6 196 aa1.18□□□□□ -2.22
CD44-235ENST00000532339 PRO1933Q9H354 126 aa1.18□□□□□ -2.22
CD44-235ENST00000532339 TRBV27A0A0K0K1C4 114 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 C17orf112F2Z3M2 114 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 NDUFA6P56556 154 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 HBBP68871 147 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 PYDC1Q8WXC3 89 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 FAM107BQ9H098 131 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 C14orf132Q9NPU4 83 aa1.17□□□□□ -2.22
CD44-235ENST00000532339 H0YAA0 97 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 SFT2D2O95562 160 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 TRGC2P03986 189 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 IGLC6P0CF74 106 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 AKAIN1P0CW23 69 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 MT1GP13640 62 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 ROMO1P60602 79 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 SSBP1Q04837 148 aaKnown RBP1.16□□□□□ -2.22
CD44-235ENST00000532339 STX12Q86Y82 276 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 KCNQ1DNQ9H478 68 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 BIN3Q9NQY0 253 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 SCP2D1Q9UJQ7 156 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 TPRKBQ9Y3C4 175 aa1.16□□□□□ -2.22
CD44-235ENST00000532339 F2Z2F3 143 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 MT1EP04732 61 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 SPRR1BP22528 89 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 FCER1GP30273 86 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 AKR1D1P51857 326 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 POLR2KP53803 58 aaKnown RBP1.15□□□□□ -2.23
CD44-235ENST00000532339 UBE2G1P62253 170 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 MRPS36P82909 103 aaKnown RBP1.15□□□□□ -2.23
CD44-235ENST00000532339 KLKP1Q107X0 134 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 ST20Q9HBF5 79 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 LAMTOR3Q9UHA4 124 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 SNURFQ9Y675 71 aa1.15□□□□□ -2.23
CD44-235ENST00000532339 A0A1W2PRE2 83 aa1.14□□□□□ -2.23
CD44-235ENST00000532339 H1FX-AS1Q4G0G2 97 aa1.14□□□□□ -2.23
CD44-235ENST00000532339 Q6ZRX8 168 aa1.14□□□□□ -2.23
CD44-235ENST00000532339 TMEM167BQ9NRX6 74 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms