RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 C21orf62-AS1Q17RA5 79 aa12.98□□□□□ -0.33
VPS28-212ENST00000530836 C14orf132Q9NPU4 83 aa12.98□□□□□ -0.33
VPS28-212ENST00000530836 PDE6GP18545 87 aa12.97□□□□□ -0.33
VPS28-212ENST00000530836 DSCR8Q96T75 97 aa12.96□□□□□ -0.33
VPS28-212ENST00000530836 FAM240AA0A1B0GVK7 77 aa12.95□□□□□ -0.34
VPS28-212ENST00000530836 FAM229AH3BQW9 127 aa12.95□□□□□ -0.34
VPS28-212ENST00000530836 IGLV7-43P04211 117 aa12.95□□□□□ -0.34
VPS28-212ENST00000530836 LOC110117498A0A087WWA1 95 aa12.94□□□□□ -0.34
VPS28-212ENST00000530836 ACYP1P07311 99 aa12.94□□□□□ -0.34
VPS28-212ENST00000530836 SPRR1BP22528 89 aa12.94□□□□□ -0.34
VPS28-212ENST00000530836 ZNF706Q9Y5V0 76 aaPredicted RBP12.94□□□□□ -0.34
VPS28-212ENST00000530836 Q5VSD8 79 aa12.93□□□□□ -0.34
VPS28-212ENST00000530836 A0A1B0GV72 72 aa12.91□□□□□ -0.34
VPS28-212ENST00000530836 KRTAP4-5Q9BYR2 181 aa12.91□□□□□ -0.34
VPS28-212ENST00000530836 CCKP06307 115 aa12.9□□□□□ -0.34
VPS28-212ENST00000530836 TRBV7-4A0A0J9YYF1 115 aa12.89□□□□□ -0.35
VPS28-212ENST00000530836 F8WEM9 126 aa12.89□□□□□ -0.35
VPS28-212ENST00000530836 GAGE2AQ6NT46 116 aa12.89□□□□□ -0.35
VPS28-212ENST00000530836 SMIM29Q86T20 159 aa12.88□□□□□ -0.35
VPS28-212ENST00000530836 Q6ZQT0 140 aa12.88□□□□□ -0.35
VPS28-212ENST00000530836 PLA2G1BP04054 148 aaKnown RBP12.87□□□□□ -0.35
VPS28-212ENST00000530836 C3orf22Q8N5N4 141 aa12.86□□□□□ -0.35
VPS28-212ENST00000530836 SPRR4Q96PI1 79 aa12.86□□□□□ -0.35
VPS28-212ENST00000530836 SRRM2Q9UQ35 2752 aaKnown RBP12.86□□□□□ -0.35
VPS28-212ENST00000530836 VPS13BQ7Z7G8 4022 aa12.85□□□□□ -0.35
VPS28-212ENST00000530836 RPL37AP61513 92 aaKnown RBP12.84□□□□□ -0.35
VPS28-212ENST00000530836 LINC00483Q53H64 154 aa12.84□□□□□ -0.35
VPS28-212ENST00000530836 VPS25Q9BRG1 176 aa12.84□□□□□ -0.35
VPS28-212ENST00000530836 KRTAP10-4P60372 401 aaPredicted RBP12.83□□□□□ -0.36
VPS28-212ENST00000530836 IGLV8-61A0A075B6I0 122 aa12.82□□□□□ -0.36
VPS28-212ENST00000530836 ABCA13Q86UQ4 5058 aa12.78□□□□□ -0.36
VPS28-212ENST00000530836 A0A1B0GW54 56 aa12.77□□□□□ -0.36
VPS28-212ENST00000530836 Q6JHZ5 121 aa12.77□□□□□ -0.36
VPS28-212ENST00000530836 CDIP1Q9H305 208 aa12.77□□□□□ -0.36
VPS28-212ENST00000530836 LINC00846Q9NV44 126 aa12.71□□□□□ -0.37
VPS28-212ENST00000530836 IGFL1Q6UW32 110 aa12.7□□□□□ -0.38
VPS28-212ENST00000530836 Q8NBF4 154 aa12.7□□□□□ -0.38
VPS28-212ENST00000530836 PCLOQ9Y6V0 5065 aa12.69□□□□□ -0.38
VPS28-212ENST00000530836 UBL5Q9BZL1 73 aa12.69□□□□□ -0.38
VPS28-212ENST00000530836 SPINK6Q6UWN8 80 aa12.68□□□□□ -0.38
VPS28-212ENST00000530836 LINC00643Q86TS7 51 aa12.67□□□□□ -0.38
VPS28-212ENST00000530836 A0A1W2PNM2 257 aa12.66□□□□□ -0.38
VPS28-212ENST00000530836 IGLV9-49A0A0B4J1Y8 123 aa12.66□□□□□ -0.38
VPS28-212ENST00000530836 C9orf153Q5TBE3 101 aa12.66□□□□□ -0.38
VPS28-212ENST00000530836 SIGMAR1Q99720 223 aa12.66□□□□□ -0.38
VPS28-212ENST00000530836 CRYGAP11844 174 aa12.65□□□□□ -0.38
VPS28-212ENST00000530836 FAM229BQ4G0N7 80 aa12.65□□□□□ -0.38
VPS28-212ENST00000530836 Q6Q795 121 aa12.64□□□□□ -0.39
VPS28-212ENST00000530836 ANAPC11Q9NYG5 84 aa12.62□□□□□ -0.39
VPS28-212ENST00000530836 FLG2Q5D862 2391 aaPredicted RBP12.6□□□□□ -0.39
VPS28-212ENST00000530836 MOBPQ13875 183 aa12.59□□□□□ -0.39
VPS28-212ENST00000530836 SSBP3-AS1Q7Z2R9 100 aa12.59□□□□□ -0.39
VPS28-212ENST00000530836 PKHD1L1Q86WI1 4243 aa12.58□□□□□ -0.4
VPS28-212ENST00000530836 ATP5EP2Q5VTU8 51 aa12.58□□□□□ -0.4
VPS28-212ENST00000530836 Q6ZVQ6 151 aa12.58□□□□□ -0.4
VPS28-212ENST00000530836 MYCBP2O75592 4640 aa12.57□□□□□ -0.4
VPS28-212ENST00000530836 TRBV7-7A0A0K0K1E9 115 aa12.56□□□□□ -0.4
VPS28-212ENST00000530836 MT-ATP8P03928 68 aa12.56□□□□□ -0.4
VPS28-212ENST00000530836 NREPQ16612 68 aa12.56□□□□□ -0.4
VPS28-212ENST00000530836 A0A0G2JQZ4 141 aa12.55□□□□□ -0.4
VPS28-212ENST00000530836 KRTAP1-4P0C5Y4 121 aa12.55□□□□□ -0.4
VPS28-212ENST00000530836 IMUPQ9GZP8 106 aa12.51□□□□□ -0.41
VPS28-212ENST00000530836 A0A087WSZ3 146 aa12.5□□□□□ -0.41
VPS28-212ENST00000530836 A0A087X002 238 aa12.49□□□□□ -0.41
VPS28-212ENST00000530836 LRP1Q07954 4544 aaKnown RBP12.49□□□□□ -0.41
VPS28-212ENST00000530836 CXCL6P80162 114 aa12.48□□□□□ -0.41
VPS28-212ENST00000530836 CD164Q04900 197 aa12.48□□□□□ -0.41
VPS28-212ENST00000530836 KRTAP29-1A8MX34 341 aaPredicted RBP12.47□□□□□ -0.41
VPS28-212ENST00000530836 OXTP01178 125 aa12.47□□□□□ -0.41
VPS28-212ENST00000530836 KRTAP13-2Q52LG2 175 aa12.46□□□□□ -0.41
VPS28-212ENST00000530836 FAT3Q8TDW7 4589 aa12.46□□□□□ -0.42
VPS28-212ENST00000530836 SS18L2Q9UHA2 77 aa12.45□□□□□ -0.42
VPS28-212ENST00000530836 IGKV3D-7A0A0C4DH55 119 aa12.44□□□□□ -0.42
VPS28-212ENST00000530836 BPY2O14599 106 aa12.42□□□□□ -0.42
VPS28-212ENST00000530836 TYMSOSQ8TAI1 123 aa12.4□□□□□ -0.42
VPS28-212ENST00000530836 HRCT1Q6UXD1 115 aa12.4□□□□□ -0.42
VPS28-212ENST00000530836 SCGB1A1P11684 91 aa12.39□□□□□ -0.43
VPS28-212ENST00000530836 J3QL48 77 aa12.37□□□□□ -0.43
VPS28-212ENST00000530836 DMBT1Q9UGM3 2413 aaPredicted RBP12.33□□□□□ -0.43
VPS28-212ENST00000530836 HIST1H4AP62805 103 aaKnown RBP12.33□□□□□ -0.43
VPS28-212ENST00000530836 LINC00472Q9H8W2 130 aa12.33□□□□□ -0.43
VPS28-212ENST00000530836 J3KT08 172 aa12.33□□□□□ -0.44
VPS28-212ENST00000530836 MT1HL1P0DM35 61 aa12.33□□□□□ -0.44
VPS28-212ENST00000530836 C4orf48Q5BLP8 95 aa12.33□□□□□ -0.44
VPS28-212ENST00000530836 PRR26Q8N8Z3 221 aa12.33□□□□□ -0.44
VPS28-212ENST00000530836 Q5XG85 94 aa12.31□□□□□ -0.44
VPS28-212ENST00000530836 KRTAP10-8P60410 259 aa12.29□□□□□ -0.44
VPS28-212ENST00000530836 ASB16-AS1Q495Z4 193 aa12.29□□□□□ -0.44
VPS28-212ENST00000530836 SPAG11AQ6PDA7 123 aa12.29□□□□□ -0.44
VPS28-212ENST00000530836 SPINK1P00995 79 aa12.29□□□□□ -0.44
VPS28-212ENST00000530836 LIMD2Q9BT23 127 aa12.28□□□□□ -0.44
VPS28-212ENST00000530836 DSCR10P59022 87 aa12.26□□□□□ -0.45
VPS28-212ENST00000530836 RPS29P62273 56 aaKnown RBP12.26□□□□□ -0.45
VPS28-212ENST00000530836 LINC00304Q8N9R0 145 aa12.26□□□□□ -0.45
VPS28-212ENST00000530836 TNXBP22105 4242 aa12.26□□□□□ -0.45
VPS28-212ENST00000530836 DEFB116Q30KQ4 102 aa12.24□□□□□ -0.45
VPS28-212ENST00000530836 Q96NJ1 140 aa12.24□□□□□ -0.45
VPS28-212ENST00000530836 IGKV4-1P06312 121 aa12.23□□□□□ -0.45
VPS28-212ENST00000530836 A0A087WVE0 104 aa12.22□□□□□ -0.45
VPS28-212ENST00000530836 FAM236AA0A1B0GUQ0 79 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms