RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 A8MUU9 505 aa10.13□□□□□ -0.79
SQSTM1-215ENST00000514093 Q6JHZ5 121 aa10.13□□□□□ -0.79
SQSTM1-215ENST00000514093 LST1O00453 97 aa10.11□□□□□ -0.79
SQSTM1-215ENST00000514093 SLC7A5P1Q8MH63 180 aa10.11□□□□□ -0.79
SQSTM1-215ENST00000514093 SMIM11BQ8TCY0 68 aa10.11□□□□□ -0.79
SQSTM1-215ENST00000514093 LINC00846Q9NV44 126 aa10.11□□□□□ -0.79
SQSTM1-215ENST00000514093 SYS1-DBNDD2H3BUS1 97 aa10.1□□□□□ -0.79
SQSTM1-215ENST00000514093 KRTAP19-6Q3LI70 58 aa10.1□□□□□ -0.79
SQSTM1-215ENST00000514093 OCIAD2Q56VL3 154 aa10.08□□□□□ -0.8
SQSTM1-215ENST00000514093 SCGB1D4Q6XE38 83 aa10.07□□□□□ -0.8
SQSTM1-215ENST00000514093 TRAV13-2A0A0B4J235 113 aa10.06□□□□□ -0.8
SQSTM1-215ENST00000514093 KRTAP16-1A8MUX0 517 aa10.06□□□□□ -0.8
SQSTM1-215ENST00000514093 Q6ZQY7 126 aa10.06□□□□□ -0.8
SQSTM1-215ENST00000514093 MUSTN1Q8IVN3 82 aa10.06□□□□□ -0.8
SQSTM1-215ENST00000514093 KRTAP6-3Q3LI67 103 aa10.04□□□□□ -0.8
SQSTM1-215ENST00000514093 LINC00575Q6W349 94 aa10.04□□□□□ -0.8
SQSTM1-215ENST00000514093 IFITM1P13164 125 aa10.03□□□□□ -0.8
SQSTM1-215ENST00000514093 LINC01545Q5VT33 79 aa10.03□□□□□ -0.8
SQSTM1-215ENST00000514093 COPS9Q8WXC6 57 aa10.03□□□□□ -0.8
SQSTM1-215ENST00000514093 hADV29S1A0JD25 119 aa10□□□□□ -0.81
SQSTM1-215ENST00000514093 DSCR10P59022 87 aa10□□□□□ -0.81
SQSTM1-215ENST00000514093 H3BUT2 72 aa9.99□□□□□ -0.81
SQSTM1-215ENST00000514093 VAMP3Q15836 100 aa9.99□□□□□ -0.81
SQSTM1-215ENST00000514093 RBM12B-AS1Q9P1G2 102 aa9.99□□□□□ -0.81
SQSTM1-215ENST00000514093 HRES1P13985 223 aa9.98□□□□□ -0.81
SQSTM1-215ENST00000514093 MPLKIPQ8TAP9 179 aa9.98□□□□□ -0.81
SQSTM1-215ENST00000514093 PET117Q6UWS5 81 aa9.96□□□□□ -0.82
SQSTM1-215ENST00000514093 Q6ZVH6 145 aa9.95□□□□□ -0.82
SQSTM1-215ENST00000514093 SNHG12Q9BXW3 62 aa9.93□□□□□ -0.82
SQSTM1-215ENST00000514093 ANKRD39Q53RE8 183 aa9.92□□□□□ -0.82
SQSTM1-215ENST00000514093 SS18L2Q9UHA2 77 aa9.92□□□□□ -0.82
SQSTM1-215ENST00000514093 C3orf79P0CE67 100 aa9.89□□□□□ -0.83
SQSTM1-215ENST00000514093 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-215ENST00000514093 NOTCH2NLQ7Z3S9 236 aa9.88□□□□□ -0.83
SQSTM1-215ENST00000514093 COLCA2A8K830 154 aa9.87□□□□□ -0.83
SQSTM1-215ENST00000514093 NEBP20929 6669 aa9.87□□□□□ -0.83
SQSTM1-215ENST00000514093 A0A087WSZ3 146 aa9.86□□□□□ -0.83
SQSTM1-215ENST00000514093 SCGB1D1O95968 90 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 LINC00313P59037 77 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 KRTDAPP60985 99 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 TEN1Q86WV5 123 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 ATOH7Q8N100 152 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 PPDPFLQ8WWR9 84 aa9.84□□□□□ -0.83
SQSTM1-215ENST00000514093 SIGMAR1Q99720 223 aa9.82□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BKO60814 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BJP06899 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BOP23527 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BBP33778 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BDP58876 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BCP62807 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST2H2BEQ16778 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BHQ93079 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BNQ99877 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 HIST1H2BMQ99879 126 aa9.81□□□□□ -0.84
SQSTM1-215ENST00000514093 Q8N9P0 234 aaPredicted RBP9.78□□□□□ -0.84
SQSTM1-215ENST00000514093 MTURNQ8N3F0 131 aa9.75□□□□□ -0.85
SQSTM1-215ENST00000514093 MUC12Q9UKN1 5478 aa9.73□□□□□ -0.85
SQSTM1-215ENST00000514093 BVES-AS1Q5T3Y7 98 aa9.73□□□□□ -0.85
SQSTM1-215ENST00000514093 IGKV4-1P06312 121 aa9.72□□□□□ -0.85
SQSTM1-215ENST00000514093 NDUFV3P56181 108 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-215ENST00000514093 C12orf57Q99622 126 aa9.72□□□□□ -0.85
SQSTM1-215ENST00000514093 A8MWP4 228 aa9.71□□□□□ -0.86
SQSTM1-215ENST00000514093 A0A1W2PNM2 257 aa9.67□□□□□ -0.86
SQSTM1-215ENST00000514093 H3BMG7 143 aa9.67□□□□□ -0.86
SQSTM1-215ENST00000514093 DEFB116Q30KQ4 102 aa9.67□□□□□ -0.86
SQSTM1-215ENST00000514093 IGHV6-1A0A0B4J1U7 121 aa9.64□□□□□ -0.87
SQSTM1-215ENST00000514093 KRTAP20-1Q3LI63 56 aa9.63□□□□□ -0.87
SQSTM1-215ENST00000514093 SPINK7P58062 85 aa9.62□□□□□ -0.87
SQSTM1-215ENST00000514093 FAM218AQ96MZ4 157 aa9.62□□□□□ -0.87
SQSTM1-215ENST00000514093 FABP2P12104 132 aa9.59□□□□□ -0.87
SQSTM1-215ENST00000514093 SNCGO76070 127 aa9.57□□□□□ -0.88
SQSTM1-215ENST00000514093 SNRPEP62304 92 aaKnown RBP9.57□□□□□ -0.88
SQSTM1-215ENST00000514093 COA6Q5JTJ3 125 aaKnown RBP9.57□□□□□ -0.88
SQSTM1-215ENST00000514093 ZCCHC13Q8WW36 166 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-215ENST00000514093 LINC00472Q9H8W2 130 aa9.56□□□□□ -0.88
SQSTM1-215ENST00000514093 A0A1B0GV72 72 aa9.53□□□□□ -0.88
SQSTM1-215ENST00000514093 HIST1H4GQ99525 98 aa9.53□□□□□ -0.88
SQSTM1-215ENST00000514093 H0YGX0 51 aa9.52□□□□□ -0.89
SQSTM1-215ENST00000514093 WFDC13Q8IUB5 93 aa9.52□□□□□ -0.89
SQSTM1-215ENST00000514093 TRBV7-4A0A0J9YYF1 115 aa9.51□□□□□ -0.89
SQSTM1-215ENST00000514093 ANKRD29Q8N6D5 301 aa9.5□□□□□ -0.89
SQSTM1-215ENST00000514093 A0A1B0GVX0 72 aa9.46□□□□□ -0.9
SQSTM1-215ENST00000514093 HSBP1L1C9JCN9 74 aa9.46□□□□□ -0.9
SQSTM1-215ENST00000514093 C8orf87E5RJ46 101 aa9.46□□□□□ -0.9
SQSTM1-215ENST00000514093 RAB37Q96AX2 223 aa9.46□□□□□ -0.9
SQSTM1-215ENST00000514093 GHRHP01286 108 aa9.45□□□□□ -0.9
SQSTM1-215ENST00000514093 A6NN06 94 aa9.42□□□□□ -0.9
SQSTM1-215ENST00000514093 TRACP01848 142 aa9.41□□□□□ -0.9
SQSTM1-215ENST00000514093 CCKP06307 115 aa9.41□□□□□ -0.9
SQSTM1-215ENST00000514093 A0A1B0GX51 115 aa9.39□□□□□ -0.91
SQSTM1-215ENST00000514093 MDN1Q9NU22 5596 aa9.36□□□□□ -0.91
SQSTM1-215ENST00000514093 A0A0B4J2C4 111 aa9.35□□□□□ -0.91
SQSTM1-215ENST00000514093 LYRM7Q5U5X0 104 aa9.35□□□□□ -0.91
SQSTM1-215ENST00000514093 H1FX-AS1Q4G0G2 97 aa9.34□□□□□ -0.91
SQSTM1-215ENST00000514093 KMT2DO14686 5537 aa9.32□□□□□ -0.92
SQSTM1-215ENST00000514093 VPS25Q9BRG1 176 aa9.32□□□□□ -0.92
SQSTM1-215ENST00000514093 COX8AP10176 69 aa9.31□□□□□ -0.92
SQSTM1-215ENST00000514093 HIST1H2BLQ99880 126 aa9.31□□□□□ -0.92
SQSTM1-215ENST00000514093 ORMDL1Q9P0S3 153 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms