RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 FLNBO75369 2602 aaKnown RBP5.78□□□□□ -1.48
LIMCH1-218ENST00000513024 LINC00528Q8N1L1 170 aa5.78□□□□□ -1.48
LIMCH1-218ENST00000513024 ASH1LQ9NR48 2969 aaKnown RBP5.77□□□□□ -1.49
LIMCH1-218ENST00000513024 GVQW2A0A096LPI5 108 aaPredicted RBP5.77□□□□□ -1.49
LIMCH1-218ENST00000513024 LINC01558Q9Y6Z2 57 aa5.77□□□□□ -1.49
LIMCH1-218ENST00000513024 A0A1B0GVX0 72 aa5.77□□□□□ -1.49
LIMCH1-218ENST00000513024 CHTF8P0CG12 524 aa5.77□□□□□ -1.49
LIMCH1-218ENST00000513024 IGFL1Q6UW32 110 aa5.76□□□□□ -1.49
LIMCH1-218ENST00000513024 CENPEQ02224 2701 aa5.76□□□□□ -1.49
LIMCH1-218ENST00000513024 MAST4O15021 2626 aa5.76□□□□□ -1.49
LIMCH1-218ENST00000513024 FAM229BQ4G0N7 80 aa5.75□□□□□ -1.49
LIMCH1-218ENST00000513024 Q5VV11 94 aa5.74□□□□□ -1.49
LIMCH1-218ENST00000513024 FAM168BA1KXE4 195 aa5.74□□□□□ -1.49
LIMCH1-218ENST00000513024 KCNQ1DNQ9H478 68 aa5.74□□□□□ -1.49
LIMCH1-218ENST00000513024 IGLV5-48A0A075B6I7 105 aa5.73□□□□□ -1.49
LIMCH1-218ENST00000513024 IGLV7-46A0A075B6I9 117 aa5.73□□□□□ -1.49
LIMCH1-218ENST00000513024 Q8N377 158 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 LINC00483Q53H64 154 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 OBSCN-AS1Q96MR7 158 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 DCHS2Q6V1P9 2916 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 A0A0G2JQZ4 141 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 A0A1B0GU33 70 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 A0A1W2PNN7 141 aa5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 FLG2Q5D862 2391 aaPredicted RBP5.72□□□□□ -1.49
LIMCH1-218ENST00000513024 DSCR10P59022 87 aa5.71□□□□□ -1.5
LIMCH1-218ENST00000513024 HECTD1Q9ULT8 2610 aa5.7□□□□□ -1.5
LIMCH1-218ENST00000513024 CFAP46Q8IYW2 2715 aa5.7□□□□□ -1.5
LIMCH1-218ENST00000513024 PLA2G2DQ9UNK4 145 aa5.7□□□□□ -1.5
LIMCH1-218ENST00000513024 Q8NAQ8 132 aa5.69□□□□□ -1.5
LIMCH1-218ENST00000513024 HRNRQ86YZ3 2850 aaPredicted RBP5.69□□□□□ -1.5
LIMCH1-218ENST00000513024 CYSTM1Q9H1C7 97 aa5.69□□□□□ -1.5
LIMCH1-218ENST00000513024 IGLV1-50A0A075B6I6 118 aa5.68□□□□□ -1.5
LIMCH1-218ENST00000513024 TLX1NBP0CAT3 122 aa5.68□□□□□ -1.5
LIMCH1-218ENST00000513024 C19orf73Q9NVV2 129 aa5.68□□□□□ -1.5
LIMCH1-218ENST00000513024 A0A1W2PNM2 257 aa5.68□□□□□ -1.5
LIMCH1-218ENST00000513024 DNAH10OSP0CZ25 163 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 SPINK7P58062 85 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 IGSF10Q6WRI0 2623 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 ASB16-AS1Q495Z4 193 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 LINC00304Q8N9R0 145 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 CSMD1Q96PZ7 3565 aa5.67□□□□□ -1.5
LIMCH1-218ENST00000513024 CAMK2N1Q7Z7J9 78 aa5.66□□□□□ -1.5
LIMCH1-218ENST00000513024 C15orf56Q8N910 161 aa5.66□□□□□ -1.5
LIMCH1-218ENST00000513024 OXTP01178 125 aa5.65□□□□□ -1.5
LIMCH1-218ENST00000513024 Q8N1X5 172 aa5.65□□□□□ -1.51
LIMCH1-218ENST00000513024 FLNCQ14315 2725 aa5.63□□□□□ -1.51
LIMCH1-218ENST00000513024 A0A087WTM6 91 aa5.63□□□□□ -1.51
LIMCH1-218ENST00000513024 CASC10Q5T4H9 136 aa5.62□□□□□ -1.51
LIMCH1-218ENST00000513024 UTP20O75691 2785 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-218ENST00000513024 CHD6Q8TD26 2715 aa5.62□□□□□ -1.51
LIMCH1-218ENST00000513024 KRTAP10-11P60412 298 aa5.62□□□□□ -1.51
LIMCH1-218ENST00000513024 CRYBG3Q68DQ2 2970 aa5.61□□□□□ -1.51
LIMCH1-218ENST00000513024 PRR34Q9NV39 138 aa5.61□□□□□ -1.51
LIMCH1-218ENST00000513024 SMR3BP02814 79 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-218ENST00000513024 PSORS1C2Q9UIG4 136 aa5.6□□□□□ -1.51
LIMCH1-218ENST00000513024 KRTAP21-3Q3LHN1 58 aa5.6□□□□□ -1.51
LIMCH1-218ENST00000513024 ZANQ9Y493 2812 aa5.59□□□□□ -1.51
LIMCH1-218ENST00000513024 HRES1P13985 223 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 IGLV5-37A0A075B6J1 123 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 M0R2T5 61 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 ANAPC11Q9NYG5 84 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 SVEP1Q4LDE5 3571 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 ITPR3Q14573 2671 aa5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 GIG44P09565 113 aaPredicted RBP5.58□□□□□ -1.52
LIMCH1-218ENST00000513024 CR1P17927 2039 aa5.57□□□□□ -1.52
LIMCH1-218ENST00000513024 CSMD2Q7Z408 3487 aa5.57□□□□□ -1.52
LIMCH1-218ENST00000513024 LCE6AA0A183 80 aa5.57□□□□□ -1.52
LIMCH1-218ENST00000513024 CELSR1Q9NYQ6 3014 aa5.56□□□□□ -1.52
LIMCH1-218ENST00000513024 VPS13CQ709C8 3753 aa5.56□□□□□ -1.52
LIMCH1-218ENST00000513024 ROMO1P60602 79 aa5.56□□□□□ -1.52
LIMCH1-218ENST00000513024 KMT2BQ9UMN6 2715 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-218ENST00000513024 STAB1Q9NY15 2570 aa5.55□□□□□ -1.52
LIMCH1-218ENST00000513024 SPRR4Q96PI1 79 aa5.55□□□□□ -1.52
LIMCH1-218ENST00000513024 IGLV7-43P04211 117 aa5.54□□□□□ -1.52
LIMCH1-218ENST00000513024 ZNF861PO60384 105 aa5.54□□□□□ -1.52
LIMCH1-218ENST00000513024 A0A096LNT2 108 aa5.54□□□□□ -1.52
LIMCH1-218ENST00000513024 TENM4Q6N022 2769 aa5.53□□□□□ -1.52
LIMCH1-218ENST00000513024 TEX15Q9BXT5 2789 aa5.53□□□□□ -1.52
LIMCH1-218ENST00000513024 CELSR2Q9HCU4 2923 aa5.53□□□□□ -1.52
LIMCH1-218ENST00000513024 Q6ZSA8 131 aa5.52□□□□□ -1.53
LIMCH1-218ENST00000513024 C9orf92A6NGG3 77 aa5.52□□□□□ -1.53
LIMCH1-218ENST00000513024 NOTCH1P46531 2555 aa5.51□□□□□ -1.53
LIMCH1-218ENST00000513024 FLNAP21333 2647 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-218ENST00000513024 SEC61BP60468 96 aaKnown RBP5.5□□□□□ -1.53
LIMCH1-218ENST00000513024 RPL37P61927 97 aaKnown RBP5.5□□□□□ -1.53
LIMCH1-218ENST00000513024 LINC00612Q8N6U2 182 aa5.5□□□□□ -1.53
LIMCH1-218ENST00000513024 NDUFAF8A1L188 74 aa5.49□□□□□ -1.53
LIMCH1-218ENST00000513024 NBPF19A0A087WUL8 3843 aa5.49□□□□□ -1.53
LIMCH1-218ENST00000513024 A6NN06 94 aa5.49□□□□□ -1.53
LIMCH1-218ENST00000513024 UBR5O95071 2799 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-218ENST00000513024 CNBPP62633 177 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-218ENST00000513024 MXRA5Q9NR99 2828 aa5.48□□□□□ -1.53
LIMCH1-218ENST00000513024 NBEAL1Q6ZS30 2694 aa5.48□□□□□ -1.53
LIMCH1-218ENST00000513024 NF1P21359 2839 aa5.48□□□□□ -1.53
LIMCH1-218ENST00000513024 KRTAP1-3Q8IUG1 177 aa5.47□□□□□ -1.53
LIMCH1-218ENST00000513024 KRTAP1-1Q07627 177 aa5.47□□□□□ -1.53
LIMCH1-218ENST00000513024 FBN2P35556 2912 aa5.46□□□□□ -1.54
LIMCH1-218ENST00000513024 HELZ2Q9BYK8 2649 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-218ENST00000513024 GCN1Q92616 2671 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-218ENST00000513024 MMP24-AS1A0A0U1RRL7 71 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms