RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CHTF8P0CG12 524 aa10.47□□□□□ -0.73
CCDC88B-210ENST00000494566 SPRR1AP35321 89 aa10.47□□□□□ -0.73
CCDC88B-210ENST00000494566 IGLV5-37A0A075B6J1 123 aa10.47□□□□□ -0.73
CCDC88B-210ENST00000494566 DHRS4-AS1Q9P1J3 65 aa10.47□□□□□ -0.73
CCDC88B-210ENST00000494566 STARD9Q9P2P6 4700 aa10.46□□□□□ -0.73
CCDC88B-210ENST00000494566 SMIM26A0A096LP01 95 aa10.45□□□□□ -0.74
CCDC88B-210ENST00000494566 DYNC2H1Q8NCM8 4307 aaKnown RBP10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 BCE1O60756 84 aa10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 PRKDCP78527 4128 aaKnown RBP10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 IGLV5-48A0A075B6I7 105 aa10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 REG3GQ6UW15 175 aa10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 DSCR10P59022 87 aa10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 APLNQ9ULZ1 77 aa10.44□□□□□ -0.74
CCDC88B-210ENST00000494566 LINC00476Q8WZB0 136 aa10.43□□□□□ -0.74
CCDC88B-210ENST00000494566 Q8NBF4 154 aa10.42□□□□□ -0.74
CCDC88B-210ENST00000494566 A0A087WSZ3 146 aa10.41□□□□□ -0.74
CCDC88B-210ENST00000494566 KRTAP11-1Q8IUC1 163 aa10.41□□□□□ -0.74
CCDC88B-210ENST00000494566 NDUFC1O43677 76 aa10.39□□□□□ -0.75
CCDC88B-210ENST00000494566 PHF5AQ7RTV0 110 aaKnown RBP10.39□□□□□ -0.75
CCDC88B-210ENST00000494566 C16orf90A8MZG2 172 aa10.38□□□□□ -0.75
CCDC88B-210ENST00000494566 TNP2Q05952 138 aa10.38□□□□□ -0.75
CCDC88B-210ENST00000494566 IGFL1Q6UW32 110 aa10.36□□□□□ -0.75
CCDC88B-210ENST00000494566 CNBPP62633 177 aaKnown RBP10.35□□□□□ -0.75
CCDC88B-210ENST00000494566 KMT2AQ03164 3969 aa10.35□□□□□ -0.75
CCDC88B-210ENST00000494566 DNHD1Q96M86 4753 aa10.33□□□□□ -0.76
CCDC88B-210ENST00000494566 MEGF8Q7Z7M0 2845 aa10.33□□□□□ -0.76
CCDC88B-210ENST00000494566 PANO1I0J062 215 aa10.33□□□□□ -0.76
CCDC88B-210ENST00000494566 PSPHP1O15172 72 aa10.33□□□□□ -0.76
CCDC88B-210ENST00000494566 B9D2Q9BPU9 175 aa10.33□□□□□ -0.76
CCDC88B-210ENST00000494566 TGP01266 2768 aa10.32□□□□□ -0.76
CCDC88B-210ENST00000494566 C1orf64Q8NEQ6 169 aa10.31□□□□□ -0.76
CCDC88B-210ENST00000494566 HCG22E2RYF7 251 aa10.3□□□□□ -0.76
CCDC88B-210ENST00000494566 VPS13DQ5THJ4 4388 aa10.3□□□□□ -0.76
CCDC88B-210ENST00000494566 UBE2AP49459 152 aa10.3□□□□□ -0.76
CCDC88B-210ENST00000494566 DNAH2Q9P225 4427 aa10.29□□□□□ -0.76
CCDC88B-210ENST00000494566 PRO0628Q9UI54 55 aa10.29□□□□□ -0.76
CCDC88B-210ENST00000494566 NBDYA0A0U1RRE5 68 aa10.28□□□□□ -0.76
CCDC88B-210ENST00000494566 LINC00208Q96KT6 92 aa10.28□□□□□ -0.76
CCDC88B-210ENST00000494566 SPRR4Q96PI1 79 aa10.27□□□□□ -0.76
CCDC88B-210ENST00000494566 HECTD4Q9Y4D8 3996 aa10.26□□□□□ -0.77
CCDC88B-210ENST00000494566 FRAS1Q86XX4 4008 aa10.26□□□□□ -0.77
CCDC88B-210ENST00000494566 ATP5EP56381 51 aaPredicted RBP10.24□□□□□ -0.77
CCDC88B-210ENST00000494566 C9orf163Q8N9P6 203 aa10.24□□□□□ -0.77
CCDC88B-210ENST00000494566 C14orf177Q52M58 125 aa10.23□□□□□ -0.77
CCDC88B-210ENST00000494566 Q6ZRN7 208 aaPredicted RBP10.22□□□□□ -0.77
CCDC88B-210ENST00000494566 hDV103S1A0JD37 113 aa10.21□□□□□ -0.77
CCDC88B-210ENST00000494566 H0Y9J4 135 aa10.21□□□□□ -0.77
CCDC88B-210ENST00000494566 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.2□□□□□ -0.78
CCDC88B-210ENST00000494566 NUPR2A6NF83 97 aa10.2□□□□□ -0.78
CCDC88B-210ENST00000494566 IGLV9-49A0A0B4J1Y8 123 aa10.19□□□□□ -0.78
CCDC88B-210ENST00000494566 A8MU10 97 aa10.18□□□□□ -0.78
CCDC88B-210ENST00000494566 FBN3Q75N90 2809 aa10.17□□□□□ -0.78
CCDC88B-210ENST00000494566 CASC2Q6XLA1 102 aa10.16□□□□□ -0.78
CCDC88B-210ENST00000494566 DNAH8Q96JB1 4490 aa10.16□□□□□ -0.78
CCDC88B-210ENST00000494566 ZCCHC13Q8WW36 166 aaKnown RBP10.15□□□□□ -0.78
CCDC88B-210ENST00000494566 ANAPC11Q9NYG5 84 aa10.15□□□□□ -0.78
CCDC88B-210ENST00000494566 H0Y9P7 68 aa10.14□□□□□ -0.79
CCDC88B-210ENST00000494566 A0A1B0GW54 56 aa10.14□□□□□ -0.79
CCDC88B-210ENST00000494566 MP68P56378 58 aa10.14□□□□□ -0.79
CCDC88B-210ENST00000494566 DNAH17Q9UFH2 4485 aa10.14□□□□□ -0.79
CCDC88B-210ENST00000494566 A8MUN3 132 aa10.13□□□□□ -0.79
CCDC88B-210ENST00000494566 PCOTHQ58A44 107 aa10.13□□□□□ -0.79
CCDC88B-210ENST00000494566 LCE6AA0A183 80 aa10.1□□□□□ -0.79
CCDC88B-210ENST00000494566 IGLV8-61A0A075B6I0 122 aa10.1□□□□□ -0.79
CCDC88B-210ENST00000494566 A0A087WTM6 91 aa10.1□□□□□ -0.79
CCDC88B-210ENST00000494566 TRAV22A0A0B4J277 110 aa10.1□□□□□ -0.79
CCDC88B-210ENST00000494566 SPACA4Q8TDM5 124 aa10.09□□□□□ -0.79
CCDC88B-210ENST00000494566 DNAH6Q9C0G6 4158 aa10.09□□□□□ -0.79
CCDC88B-210ENST00000494566 PRR15Q8IV56 129 aa10.08□□□□□ -0.8
CCDC88B-210ENST00000494566 NDUFS5O43920 106 aa10.06□□□□□ -0.8
CCDC88B-210ENST00000494566 C1orf195Q5TG92 126 aa10.06□□□□□ -0.8
CCDC88B-210ENST00000494566 RTL8CO15255 209 aa10.05□□□□□ -0.8
CCDC88B-210ENST00000494566 KRTAP13-1Q8IUC0 172 aa10.05□□□□□ -0.8
CCDC88B-210ENST00000494566 SPRR1BP22528 89 aa10.04□□□□□ -0.8
CCDC88B-210ENST00000494566 KRTAP29-1A8MX34 341 aaPredicted RBP10.03□□□□□ -0.8
CCDC88B-210ENST00000494566 LINC00472Q9H8W2 130 aa10.01□□□□□ -0.81
CCDC88B-210ENST00000494566 DNAH11Q96DT5 4516 aa10.01□□□□□ -0.81
CCDC88B-210ENST00000494566 A8MWP4 228 aa10.01□□□□□ -0.81
CCDC88B-210ENST00000494566 IGHV6-1A0A0B4J1U7 121 aa10□□□□□ -0.81
CCDC88B-210ENST00000494566 PSORS1C2Q9UIG4 136 aa10□□□□□ -0.81
CCDC88B-210ENST00000494566 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
CCDC88B-210ENST00000494566 DNAH5Q8TE73 4624 aa9.98□□□□□ -0.81
CCDC88B-210ENST00000494566 LY6G6CO95867 125 aa9.97□□□□□ -0.81
CCDC88B-210ENST00000494566 Q6ZR54 194 aa9.97□□□□□ -0.81
CCDC88B-210ENST00000494566 PRR15LQ9BU68 103 aa9.97□□□□□ -0.81
CCDC88B-210ENST00000494566 Q1T7F1 81 aa9.96□□□□□ -0.81
CCDC88B-210ENST00000494566 CHKB-CPT1BH3BT56 60 aa9.96□□□□□ -0.82
CCDC88B-210ENST00000494566 NDUFB1O75438 58 aa9.96□□□□□ -0.82
CCDC88B-210ENST00000494566 IGLV5-52A0A0A0MRZ9 124 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 MMP24-AS1A0A0U1RRL7 71 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 HYDINQ4G0P3 5121 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 A0A087X002 238 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 MOBPQ13875 183 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 NOTCH2NLQ7Z3S9 236 aa9.95□□□□□ -0.82
CCDC88B-210ENST00000494566 CYP4F30PQ9H0H9 118 aa9.94□□□□□ -0.82
CCDC88B-210ENST00000494566 SPTSSBQ8NFR3 76 aa9.93□□□□□ -0.82
CCDC88B-210ENST00000494566 ALMS1Q8TCU4 4167 aa9.92□□□□□ -0.82
CCDC88B-210ENST00000494566 C1orf134Q5TEV5 83 aa9.91□□□□□ -0.82
CCDC88B-210ENST00000494566 Q5VV11 94 aa9.9□□□□□ -0.82
CCDC88B-210ENST00000494566 SPAG11AQ6PDA7 123 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms