RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 Q6ZVH6 145 aa5.95□□□□□ -1.46
COL6A3-214ENST00000493608 LAMTOR3Q9UHA4 124 aa5.95□□□□□ -1.46
COL6A3-214ENST00000493608 S100A1P23297 94 aa5.94□□□□□ -1.46
COL6A3-214ENST00000493608 AKR1D1P51857 326 aa5.94□□□□□ -1.46
COL6A3-214ENST00000493608 SLC25A34Q6PIV7 304 aa5.94□□□□□ -1.46
COL6A3-214ENST00000493608 TRBV7-6A0A0J9YX20 115 aa5.93□□□□□ -1.46
COL6A3-214ENST00000493608 A0A1B0GWB2 263 aa5.93□□□□□ -1.46
COL6A3-214ENST00000493608 S100A6P06703 90 aa5.93□□□□□ -1.46
COL6A3-214ENST00000493608 SNRPEP62304 92 aaKnown RBP5.93□□□□□ -1.46
COL6A3-214ENST00000493608 SMIM11BQ8TCY0 68 aa5.93□□□□□ -1.46
COL6A3-214ENST00000493608 TRAV13-2A0A0B4J235 113 aa5.92□□□□□ -1.46
COL6A3-214ENST00000493608 TEX49A0A1B0GTD5 131 aa5.92□□□□□ -1.46
COL6A3-214ENST00000493608 A0A0G2JQZ4 141 aa5.91□□□□□ -1.46
COL6A3-214ENST00000493608 HSBP1L1C9JCN9 74 aa5.91□□□□□ -1.46
COL6A3-214ENST00000493608 LINC01547P58512 204 aaPredicted RBP5.91□□□□□ -1.46
COL6A3-214ENST00000493608 SMIM29Q86T20 159 aa5.91□□□□□ -1.46
COL6A3-214ENST00000493608 H7C2G1 150 aa5.9□□□□□ -1.46
COL6A3-214ENST00000493608 SCGB1D1O95968 90 aa5.9□□□□□ -1.46
COL6A3-214ENST00000493608 A4D1N5 150 aa5.89□□□□□ -1.47
COL6A3-214ENST00000493608 ASB16-AS1Q495Z4 193 aa5.89□□□□□ -1.47
COL6A3-214ENST00000493608 KRTAP4-1Q9BYQ7 146 aa5.89□□□□□ -1.47
COL6A3-214ENST00000493608 PRO1933Q9H354 126 aa5.89□□□□□ -1.47
COL6A3-214ENST00000493608 LIMD2Q9BT23 127 aa5.88□□□□□ -1.47
COL6A3-214ENST00000493608 IGLV5-48A0A075B6I7 105 aa5.87□□□□□ -1.47
COL6A3-214ENST00000493608 C12orf57Q99622 126 aa5.87□□□□□ -1.47
COL6A3-214ENST00000493608 FAT4Q6V0I7 4981 aa5.87□□□□□ -1.47
COL6A3-214ENST00000493608 C9orf92A6NGG3 77 aa5.86□□□□□ -1.47
COL6A3-214ENST00000493608 SEC61BP60468 96 aaKnown RBP5.86□□□□□ -1.47
COL6A3-214ENST00000493608 VAMP3Q15836 100 aa5.85□□□□□ -1.47
COL6A3-214ENST00000493608 LINC00575Q6W349 94 aa5.85□□□□□ -1.47
COL6A3-214ENST00000493608 HIST1H4GQ99525 98 aa5.85□□□□□ -1.47
COL6A3-214ENST00000493608 NHP2Q9NX24 153 aaKnown RBP5.85□□□□□ -1.47
COL6A3-214ENST00000493608 CD164Q04900 197 aa5.84□□□□□ -1.47
COL6A3-214ENST00000493608 hADV29S1A0JD25 119 aa5.83□□□□□ -1.48
COL6A3-214ENST00000493608 COX8AP10176 69 aa5.83□□□□□ -1.48
COL6A3-214ENST00000493608 Q6ZQY7 126 aa5.83□□□□□ -1.48
COL6A3-214ENST00000493608 C14orf144Q96I85 54 aa5.83□□□□□ -1.48
COL6A3-214ENST00000493608 C1orf195Q5TG92 126 aa5.82□□□□□ -1.48
COL6A3-214ENST00000493608 PAM16Q9Y3D7 125 aa5.81□□□□□ -1.48
COL6A3-214ENST00000493608 F8WEM9 126 aa5.8□□□□□ -1.48
COL6A3-214ENST00000493608 DLEU1O43261 78 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 CFC1BP0CG36 223 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 CFC1P0CG37 223 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 SPATA45Q537H7 98 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 PCOTHQ58A44 107 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 Q5XG85 94 aa5.79□□□□□ -1.48
COL6A3-214ENST00000493608 BVES-AS1Q5T3Y7 98 aa5.78□□□□□ -1.48
COL6A3-214ENST00000493608 RAB37Q96AX2 223 aa5.77□□□□□ -1.49
COL6A3-214ENST00000493608 IGLV8-61A0A075B6I0 122 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 TCL1BO95988 128 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 OCIAD2Q56VL3 154 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 IGFL1Q6UW32 110 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.76□□□□□ -1.49
COL6A3-214ENST00000493608 C2orf91Q6ZV80 131 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 VAMP8Q9BV40 100 aa5.76□□□□□ -1.49
COL6A3-214ENST00000493608 SNHG12Q9BXW3 62 aa5.75□□□□□ -1.49
COL6A3-214ENST00000493608 HIGD1BQ9P298 99 aa5.75□□□□□ -1.49
COL6A3-214ENST00000493608 H3BUT2 72 aa5.74□□□□□ -1.49
COL6A3-214ENST00000493608 Q6JHZ5 121 aa5.74□□□□□ -1.49
COL6A3-214ENST00000493608 CLEC2BQ92478 149 aa5.74□□□□□ -1.49
COL6A3-214ENST00000493608 TRBV7-7A0A0K0K1E9 115 aa5.73□□□□□ -1.49
COL6A3-214ENST00000493608 FAM218AQ96MZ4 157 aa5.73□□□□□ -1.49
COL6A3-214ENST00000493608 A0A0B4J2C4 111 aa5.72□□□□□ -1.49
COL6A3-214ENST00000493608 LCE1AQ5T7P2 110 aa5.72□□□□□ -1.49
COL6A3-214ENST00000493608 CEND1Q8N111 149 aa5.72□□□□□ -1.49
COL6A3-214ENST00000493608 H0YGX0 51 aa5.7□□□□□ -1.5
COL6A3-214ENST00000493608 FXYD2P54710 66 aa5.7□□□□□ -1.5
COL6A3-214ENST00000493608 PPDPFLQ8WWR9 84 aa5.7□□□□□ -1.5
COL6A3-214ENST00000493608 RPL37P61927 97 aaKnown RBP5.69□□□□□ -1.5
COL6A3-214ENST00000493608 KRTAP19-2Q3LHN2 52 aa5.69□□□□□ -1.5
COL6A3-214ENST00000493608 PRO1854Q9UHT4 67 aa5.69□□□□□ -1.5
COL6A3-214ENST00000493608 SNCGO76070 127 aa5.68□□□□□ -1.5
COL6A3-214ENST00000493608 NDUFV3P56181 108 aaKnown RBP5.68□□□□□ -1.5
COL6A3-214ENST00000493608 PYY3Q5JQD4 70 aa5.68□□□□□ -1.5
COL6A3-214ENST00000493608 LST1O00453 97 aa5.67□□□□□ -1.5
COL6A3-214ENST00000493608 FABP2P12104 132 aa5.67□□□□□ -1.5
COL6A3-214ENST00000493608 TRIAP1O43715 76 aa5.66□□□□□ -1.5
COL6A3-214ENST00000493608 OBSCN-AS1Q96MR7 158 aa5.66□□□□□ -1.5
COL6A3-214ENST00000493608 H3BMG7 143 aa5.65□□□□□ -1.5
COL6A3-214ENST00000493608 K7ERJ3 54 aa5.65□□□□□ -1.5
COL6A3-214ENST00000493608 Q8N9P0 234 aaPredicted RBP5.64□□□□□ -1.51
COL6A3-214ENST00000493608 A0A087WSZ3 146 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 A0A1B0GV72 72 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 A0A1B0GX51 115 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 MT1HP80294 61 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 HSD52Q0P140 79 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 Q6Q795 121 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 TEN1Q86WV5 123 aa5.63□□□□□ -1.51
COL6A3-214ENST00000493608 PSMB2P49721 201 aa5.62□□□□□ -1.51
COL6A3-214ENST00000493608 Q96NJ1 140 aa5.61□□□□□ -1.51
COL6A3-214ENST00000493608 SS18L2Q9UHA2 77 aa5.61□□□□□ -1.51
COL6A3-214ENST00000493608 A0A1W2PNM2 257 aa5.6□□□□□ -1.51
COL6A3-214ENST00000493608 DNAL4O96015 105 aa5.59□□□□□ -1.51
COL6A3-214ENST00000493608 ATP11AUNQ6ZP68 121 aa5.59□□□□□ -1.51
COL6A3-214ENST00000493608 ORMDL1Q9P0S3 153 aa5.59□□□□□ -1.51
COL6A3-214ENST00000493608 UQCR10Q9UDW1 63 aa5.59□□□□□ -1.51
COL6A3-214ENST00000493608 COX6B2Q6YFQ2 88 aa5.58□□□□□ -1.52
COL6A3-214ENST00000493608 Q75L30 129 aa5.58□□□□□ -1.52
COL6A3-214ENST00000493608 COX6CP09669 75 aa5.57□□□□□ -1.52
COL6A3-214ENST00000493608 ANKRD29Q8N6D5 301 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms