RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 LOC110117498A0A087WWA1 95 aa9.76□□□□□ -0.85
SYNE1-227ENST00000489156 FAT1Q14517 4588 aa9.76□□□□□ -0.85
SYNE1-227ENST00000489156 CCKP06307 115 aa9.75□□□□□ -0.85
SYNE1-227ENST00000489156 C21orf62-AS1Q17RA5 79 aa9.75□□□□□ -0.85
SYNE1-227ENST00000489156 A0A1B0GV72 72 aa9.74□□□□□ -0.85
SYNE1-227ENST00000489156 GAGE2AQ6NT46 116 aa9.74□□□□□ -0.85
SYNE1-227ENST00000489156 KRTAP17-1Q9BYP8 105 aa9.73□□□□□ -0.85
SYNE1-227ENST00000489156 TRBV7-4A0A0J9YYF1 115 aa9.72□□□□□ -0.85
SYNE1-227ENST00000489156 Q6ZQT0 140 aa9.72□□□□□ -0.85
SYNE1-227ENST00000489156 CDIP1Q9H305 208 aa9.72□□□□□ -0.85
SYNE1-227ENST00000489156 VPS13BQ7Z7G8 4022 aa9.72□□□□□ -0.85
SYNE1-227ENST00000489156 C1orf137Q5JT78 98 aa9.72□□□□□ -0.85
SYNE1-227ENST00000489156 SPRR1BP22528 89 aa9.7□□□□□ -0.86
SYNE1-227ENST00000489156 ZNF861PO60384 105 aa9.7□□□□□ -0.86
SYNE1-227ENST00000489156 FAM229AH3BQW9 127 aa9.68□□□□□ -0.86
SYNE1-227ENST00000489156 RPL37AP61513 92 aaKnown RBP9.68□□□□□ -0.86
SYNE1-227ENST00000489156 SMIM29Q86T20 159 aa9.68□□□□□ -0.86
SYNE1-227ENST00000489156 Q8N1X5 172 aa9.68□□□□□ -0.86
SYNE1-227ENST00000489156 C3orf22Q8N5N4 141 aa9.68□□□□□ -0.86
SYNE1-227ENST00000489156 IGLV7-43P04211 117 aa9.67□□□□□ -0.86
SYNE1-227ENST00000489156 Q5VSD8 79 aa9.67□□□□□ -0.86
SYNE1-227ENST00000489156 F8WEM9 126 aa9.66□□□□□ -0.86
SYNE1-227ENST00000489156 ZNF706Q9Y5V0 76 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-227ENST00000489156 SRRM2Q9UQ35 2752 aaKnown RBP9.64□□□□□ -0.87
SYNE1-227ENST00000489156 IGLV8-61A0A075B6I0 122 aa9.64□□□□□ -0.87
SYNE1-227ENST00000489156 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-227ENST00000489156 SIGMAR1Q99720 223 aa9.64□□□□□ -0.87
SYNE1-227ENST00000489156 PLA2G1BP04054 148 aaKnown RBP9.63□□□□□ -0.87
SYNE1-227ENST00000489156 SPRR4Q96PI1 79 aa9.63□□□□□ -0.87
SYNE1-227ENST00000489156 LINC00846Q9NV44 126 aa9.63□□□□□ -0.87
SYNE1-227ENST00000489156 A0A1B0GW54 56 aa9.62□□□□□ -0.87
SYNE1-227ENST00000489156 LINC00483Q53H64 154 aa9.62□□□□□ -0.87
SYNE1-227ENST00000489156 LINC00643Q86TS7 51 aa9.6□□□□□ -0.87
SYNE1-227ENST00000489156 KRTAP4-5Q9BYR2 181 aa9.59□□□□□ -0.87
SYNE1-227ENST00000489156 HERC2O95714 4834 aa9.59□□□□□ -0.87
SYNE1-227ENST00000489156 Q6JHZ5 121 aa9.58□□□□□ -0.88
SYNE1-227ENST00000489156 SVIPQ8NHG7 77 aa9.57□□□□□ -0.88
SYNE1-227ENST00000489156 UBL5Q9BZL1 73 aa9.57□□□□□ -0.88
SYNE1-227ENST00000489156 MT-ATP8P03928 68 aa9.56□□□□□ -0.88
SYNE1-227ENST00000489156 Q8NBF4 154 aa9.56□□□□□ -0.88
SYNE1-227ENST00000489156 IGFL1Q6UW32 110 aa9.55□□□□□ -0.88
SYNE1-227ENST00000489156 A0A1W2PNM2 257 aa9.55□□□□□ -0.88
SYNE1-227ENST00000489156 CRYGAP11844 174 aa9.52□□□□□ -0.89
SYNE1-227ENST00000489156 SPINK6Q6UWN8 80 aa9.51□□□□□ -0.89
SYNE1-227ENST00000489156 ATP5EP2Q5VTU8 51 aa9.5□□□□□ -0.89
SYNE1-227ENST00000489156 Q6ZVQ6 151 aa9.5□□□□□ -0.89
SYNE1-227ENST00000489156 IMUPQ9GZP8 106 aa9.5□□□□□ -0.89
SYNE1-227ENST00000489156 FLG2Q5D862 2391 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-227ENST00000489156 Q6Q795 121 aa9.49□□□□□ -0.89
SYNE1-227ENST00000489156 TRBV7-7A0A0K0K1E9 115 aa9.49□□□□□ -0.89
SYNE1-227ENST00000489156 PKHD1L1Q86WI1 4243 aa9.48□□□□□ -0.89
SYNE1-227ENST00000489156 IGLV9-49A0A0B4J1Y8 123 aa9.47□□□□□ -0.89
SYNE1-227ENST00000489156 PCP4P48539 62 aa9.47□□□□□ -0.89
SYNE1-227ENST00000489156 C9orf153Q5TBE3 101 aa9.47□□□□□ -0.89
SYNE1-227ENST00000489156 NREPQ16612 68 aa9.46□□□□□ -0.9
SYNE1-227ENST00000489156 A0A0G2JQZ4 141 aa9.45□□□□□ -0.9
SYNE1-227ENST00000489156 SCGB1A1P11684 91 aa9.45□□□□□ -0.9
SYNE1-227ENST00000489156 ANAPC11Q9NYG5 84 aa9.45□□□□□ -0.9
SYNE1-227ENST00000489156 FAM229BQ4G0N7 80 aa9.44□□□□□ -0.9
SYNE1-227ENST00000489156 CXCL6P80162 114 aa9.43□□□□□ -0.9
SYNE1-227ENST00000489156 ABCA13Q86UQ4 5058 aa9.43□□□□□ -0.9
SYNE1-227ENST00000489156 MOBPQ13875 183 aa9.42□□□□□ -0.9
SYNE1-227ENST00000489156 IGKV3D-7A0A0C4DH55 119 aa9.41□□□□□ -0.9
SYNE1-227ENST00000489156 SSBP3-AS1Q7Z2R9 100 aa9.4□□□□□ -0.9
SYNE1-227ENST00000489156 A0A087WSZ3 146 aa9.4□□□□□ -0.91
SYNE1-227ENST00000489156 KRTAP1-4P0C5Y4 121 aa9.38□□□□□ -0.91
SYNE1-227ENST00000489156 LRP1Q07954 4544 aaKnown RBP9.38□□□□□ -0.91
SYNE1-227ENST00000489156 MYCBP2O75592 4640 aa9.37□□□□□ -0.91
SYNE1-227ENST00000489156 BPY2O14599 106 aa9.36□□□□□ -0.91
SYNE1-227ENST00000489156 A0A087X002 238 aa9.35□□□□□ -0.91
SYNE1-227ENST00000489156 CD164Q04900 197 aa9.35□□□□□ -0.91
SYNE1-227ENST00000489156 HIST1H4AP62805 103 aaKnown RBP9.34□□□□□ -0.91
SYNE1-227ENST00000489156 FAT3Q8TDW7 4589 aa9.33□□□□□ -0.92
SYNE1-227ENST00000489156 KRTAP13-2Q52LG2 175 aa9.32□□□□□ -0.92
SYNE1-227ENST00000489156 SS18L2Q9UHA2 77 aa9.32□□□□□ -0.92
SYNE1-227ENST00000489156 PRR26Q8N8Z3 221 aa9.31□□□□□ -0.92
SYNE1-227ENST00000489156 PCLOQ9Y6V0 5065 aa9.3□□□□□ -0.92
SYNE1-227ENST00000489156 HRCT1Q6UXD1 115 aa9.29□□□□□ -0.92
SYNE1-227ENST00000489156 LINC00472Q9H8W2 130 aa9.29□□□□□ -0.92
SYNE1-227ENST00000489156 A0A087WVE0 104 aa9.28□□□□□ -0.92
SYNE1-227ENST00000489156 FAM236AA0A1B0GUQ0 79 aa9.28□□□□□ -0.92
SYNE1-227ENST00000489156 FAM236BA0A1B0GV22 79 aa9.28□□□□□ -0.92
SYNE1-227ENST00000489156 OXTP01178 125 aa9.28□□□□□ -0.92
SYNE1-227ENST00000489156 KRTAP29-1A8MX34 341 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-227ENST00000489156 J3KT08 172 aa9.25□□□□□ -0.93
SYNE1-227ENST00000489156 DSCR10P59022 87 aa9.25□□□□□ -0.93
SYNE1-227ENST00000489156 TYMSOSQ8TAI1 123 aa9.25□□□□□ -0.93
SYNE1-227ENST00000489156 IGKV4-1P06312 121 aa9.24□□□□□ -0.93
SYNE1-227ENST00000489156 KRTAP10-8P60410 259 aa9.23□□□□□ -0.93
SYNE1-227ENST00000489156 TNXBP22105 4242 aa9.23□□□□□ -0.93
SYNE1-227ENST00000489156 MT1HL1P0DM35 61 aa9.23□□□□□ -0.93
SYNE1-227ENST00000489156 DEFB116Q30KQ4 102 aa9.22□□□□□ -0.93
SYNE1-227ENST00000489156 Q5XG85 94 aa9.22□□□□□ -0.93
SYNE1-227ENST00000489156 Q8N9L7 120 aa9.22□□□□□ -0.93
SYNE1-227ENST00000489156 ASB16-AS1Q495Z4 193 aa9.21□□□□□ -0.93
SYNE1-227ENST00000489156 Q96NJ1 140 aa9.21□□□□□ -0.93
SYNE1-227ENST00000489156 DMBT1Q9UGM3 2413 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-227ENST00000489156 K7EQZ3 153 aa9.19□□□□□ -0.94
SYNE1-227ENST00000489156 A8MWP4 228 aa9.19□□□□□ -0.94
SYNE1-227ENST00000489156 J3QL48 77 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms