RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 NESP48681 1621 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 DEFB131BA0A096LNP1 70 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 LCE6AA0A183 80 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 HMGA1P17096 107 aaKnown RBP-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 UBL5Q9BZL1 73 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 TTC37Q6PGP7 1564 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 TMEM131LA2VDJ0 1609 aa-0.49□□□□□ -2.49
PTPN4-212ENST00000488896 BVES-AS1Q5T3Y7 98 aa-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 ENHOQ6UWT2 76 aa-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 MAGI3Q5TCQ9 1506 aa-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 PIK3C2BO00750 1634 aa-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 DDX60LQ5H9U9 1706 aaKnown RBP-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 PCLOQ9Y6V0 5065 aa-0.5□□□□□ -2.49
PTPN4-212ENST00000488896 PPLO60437 1756 aa-0.51□□□□□ -2.49
PTPN4-212ENST00000488896 PKD1L2Q7Z442 2459 aa-0.51□□□□□ -2.49
PTPN4-212ENST00000488896 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.51□□□□□ -2.49
PTPN4-212ENST00000488896 TGP01266 2768 aa-0.51□□□□□ -2.49
PTPN4-212ENST00000488896 DEPDC5O75140 1603 aa-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 PLXNC1O60486 1568 aa-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 TNRC18O15417 2968 aaPredicted RBP-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 MYO18BQ8IUG5 2567 aa-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 MINOS1Q5TGZ0 78 aa-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 C18orf32Q8TCD1 76 aa-0.52□□□□□ -2.49
PTPN4-212ENST00000488896 WIZO95785 1651 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 DIP2BQ9P265 1576 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 WT1-ASQ06250 92 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 FAM186AA6NE01 2351 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 FLGP20930 4061 aaPredicted RBP-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 PLCH1Q4KWH8 1693 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 MAP3K4Q9Y6R4 1608 aa-0.53□□□□□ -2.49
PTPN4-212ENST00000488896 MAP3K1Q13233 1512 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 AKAP13Q12802 2813 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 HIVEP1P15822 2718 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 RICTORQ6R327 1708 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 ETDCA0A1B0GVM5 59 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 LRRK2Q5S007 2527 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 LAMA5O15230 3695 aa-0.54□□□□□ -2.5
PTPN4-212ENST00000488896 PRRC2CQ9Y520 2896 aaKnown RBP-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 SFTA3P0C7M3 94 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 FCER1GP30273 86 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 KCNQ1DNQ9H478 68 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 RALGAPBQ86X10 1494 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 ARHGAP35Q9NRY4 1499 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 PRKDCP78527 4128 aaKnown RBP-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 HFM1A2PYH4 1435 aa-0.55□□□□□ -2.5
PTPN4-212ENST00000488896 HERC1Q15751 4861 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 GNG13Q9P2W3 67 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 ANKRD36CQ5JPF3 1778 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 CCDC88BA6NC98 1476 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 CCDC18Q5T9S5 1454 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 TACC2O95359 2948 aa-0.56□□□□□ -2.5
PTPN4-212ENST00000488896 TRANK1O15050 2925 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 PKHD1P08F94 4074 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 DEFB1P60022 68 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 MGAM2Q2M2H8 2515 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 CEP290O15078 2479 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 LYSTQ99698 3801 aa-0.57□□□□□ -2.5
PTPN4-212ENST00000488896 KDM5DQ9BY66 1539 aa-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 MMP24-AS1A0A0U1RRL7 71 aa-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 RPS27P42677 84 aaKnown RBP-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 RPS27LQ71UM5 84 aaKnown RBP-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 C6orf48Q9UBA6 75 aa-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 TJP1Q07157 1748 aa-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 ITSN1Q15811 1721 aa-0.58□□□□□ -2.5
PTPN4-212ENST00000488896 ABCC1P33527 1531 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 CUBNO60494 3623 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 ERVK-7P63135 1459 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 IGLV5-48A0A075B6I7 105 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 H3BUA1 57 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 ATXN8Q156A1 80 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 HILPDAQ9Y5L2 63 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 ACACBO00763 2458 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 TEP1Q99973 2627 aaKnown RBP-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 CFAP43Q8NDM7 1665 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 DSPP15924 2871 aaKnown RBP-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 DMXL1Q9Y485 3027 aa-0.59□□□□□ -2.5
PTPN4-212ENST00000488896 REV3LO60673 3130 aa-0.6□□□□□ -2.5
PTPN4-212ENST00000488896 SMARCA2P51531 1590 aa-0.6□□□□□ -2.51
PTPN4-212ENST00000488896 GCN1Q92616 2671 aaKnown RBP-0.6□□□□□ -2.51
PTPN4-212ENST00000488896 KMT2CQ8NEZ4 4911 aaKnown RBP-0.6□□□□□ -2.51
PTPN4-212ENST00000488896 KIAA0586Q9BVV6 1533 aa-0.6□□□□□ -2.51
PTPN4-212ENST00000488896 DCAF1Q9Y4B6 1507 aa-0.6□□□□□ -2.51
PTPN4-212ENST00000488896 USP9YO00507 2555 aaPredicted RBP-0.61□□□□□ -2.51
PTPN4-212ENST00000488896 TNP1P09430 55 aa-0.61□□□□□ -2.51
PTPN4-212ENST00000488896 MT1HP80294 61 aa-0.61□□□□□ -2.51
PTPN4-212ENST00000488896 NOP10Q9NPE3 64 aaKnown RBP-0.61□□□□□ -2.51
PTPN4-212ENST00000488896 ANKARQ7Z5J8 1434 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 FAT1Q14517 4588 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 LMTK2Q8IWU2 1503 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 ANKRD11Q6UB99 2663 aaPredicted RBP-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 NCBP2-AS2Q69YL0 99 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 CLPSL2Q6UWE3 100 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 NRAPQ86VF7 1730 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 MED14O60244 1454 aa-0.62□□□□□ -2.51
PTPN4-212ENST00000488896 PARP4Q9UKK3 1724 aaKnown RBP-0.63□□□□□ -2.51
PTPN4-212ENST00000488896 ZC3H13Q5T200 1668 aaKnown RBP-0.63□□□□□ -2.51
PTPN4-212ENST00000488896 TOGARAM1Q9Y4F4 1720 aa-0.64□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms