RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PDE6GP18545 87 aa8.72□□□□□ -1.01
CUX1-209ENST00000487284 DSCR8Q96T75 97 aa8.72□□□□□ -1.01
CUX1-209ENST00000487284 PSORS1C2Q9UIG4 136 aa8.71□□□□□ -1.02
CUX1-209ENST00000487284 HSPG2P98160 4391 aa8.7□□□□□ -1.02
CUX1-209ENST00000487284 SMIM29Q86T20 159 aa8.69□□□□□ -1.02
CUX1-209ENST00000487284 C3orf22Q8N5N4 141 aa8.69□□□□□ -1.02
CUX1-209ENST00000487284 SIGMAR1Q99720 223 aa8.69□□□□□ -1.02
CUX1-209ENST00000487284 KIAA1109Q2LD37 5005 aa8.68□□□□□ -1.02
CUX1-209ENST00000487284 SMR3BP02814 79 aaPredicted RBP8.68□□□□□ -1.02
CUX1-209ENST00000487284 SPRR1BP22528 89 aa8.68□□□□□ -1.02
CUX1-209ENST00000487284 C21orf62-AS1Q17RA5 79 aa8.68□□□□□ -1.02
CUX1-209ENST00000487284 CDK2AP2O75956 126 aa8.67□□□□□ -1.02
CUX1-209ENST00000487284 RYR1P21817 5038 aa8.67□□□□□ -1.02
CUX1-209ENST00000487284 LINC00846Q9NV44 126 aa8.66□□□□□ -1.02
CUX1-209ENST00000487284 MT-ATP8P03928 68 aa8.65□□□□□ -1.02
CUX1-209ENST00000487284 C1orf137Q5JT78 98 aa8.65□□□□□ -1.02
CUX1-209ENST00000487284 LINC00643Q86TS7 51 aa8.64□□□□□ -1.03
CUX1-209ENST00000487284 VPS13BQ7Z7G8 4022 aa8.64□□□□□ -1.03
CUX1-209ENST00000487284 IGLV8-61A0A075B6I0 122 aa8.62□□□□□ -1.03
CUX1-209ENST00000487284 F8WEM9 126 aa8.62□□□□□ -1.03
CUX1-209ENST00000487284 ZNF861PO60384 105 aa8.62□□□□□ -1.03
CUX1-209ENST00000487284 SRRM2Q9UQ35 2752 aaKnown RBP8.61□□□□□ -1.03
CUX1-209ENST00000487284 IGLV7-43P04211 117 aa8.61□□□□□ -1.03
CUX1-209ENST00000487284 SPRR4Q96PI1 79 aa8.61□□□□□ -1.03
CUX1-209ENST00000487284 RPL37AP61513 92 aaKnown RBP8.59□□□□□ -1.03
CUX1-209ENST00000487284 ZNF706Q9Y5V0 76 aaPredicted RBP8.59□□□□□ -1.03
CUX1-209ENST00000487284 LINC00483Q53H64 154 aa8.58□□□□□ -1.04
CUX1-209ENST00000487284 Q6JHZ5 121 aa8.57□□□□□ -1.04
CUX1-209ENST00000487284 UBL5Q9BZL1 73 aa8.57□□□□□ -1.04
CUX1-209ENST00000487284 TRBV7-7A0A0K0K1E9 115 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 A0A1B0GW54 56 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 A0A1W2PNM2 257 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 Q8NBF4 154 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 IGFL1Q6UW32 110 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 KRTAP17-1Q9BYP8 105 aa8.56□□□□□ -1.04
CUX1-209ENST00000487284 KRTAP10-4P60372 401 aaPredicted RBP8.55□□□□□ -1.04
CUX1-209ENST00000487284 Q6Q795 121 aa8.55□□□□□ -1.04
CUX1-209ENST00000487284 SCGB1A1P11684 91 aa8.54□□□□□ -1.04
CUX1-209ENST00000487284 Q6ZVQ6 151 aa8.54□□□□□ -1.04
CUX1-209ENST00000487284 FAM229AH3BQW9 127 aa8.53□□□□□ -1.04
CUX1-209ENST00000487284 Q5VSD8 79 aa8.53□□□□□ -1.04
CUX1-209ENST00000487284 IMUPQ9GZP8 106 aa8.53□□□□□ -1.04
CUX1-209ENST00000487284 ATP5EP2Q5VTU8 51 aa8.52□□□□□ -1.04
CUX1-209ENST00000487284 HERC2O95714 4834 aa8.52□□□□□ -1.05
CUX1-209ENST00000487284 CRYGAP11844 174 aa8.51□□□□□ -1.05
CUX1-209ENST00000487284 Q8N1X5 172 aa8.51□□□□□ -1.05
CUX1-209ENST00000487284 IGKV3D-7A0A0C4DH55 119 aa8.5□□□□□ -1.05
CUX1-209ENST00000487284 A0A0G2JQZ4 141 aa8.5□□□□□ -1.05
CUX1-209ENST00000487284 PLA2G1BP04054 148 aaKnown RBP8.5□□□□□ -1.05
CUX1-209ENST00000487284 IGLV9-49A0A0B4J1Y8 123 aa8.46□□□□□ -1.06
CUX1-209ENST00000487284 CXCL6P80162 114 aa8.45□□□□□ -1.06
CUX1-209ENST00000487284 NREPQ16612 68 aa8.45□□□□□ -1.06
CUX1-209ENST00000487284 C9orf153Q5TBE3 101 aa8.45□□□□□ -1.06
CUX1-209ENST00000487284 ANAPC11Q9NYG5 84 aa8.45□□□□□ -1.06
CUX1-209ENST00000487284 PKHD1L1Q86WI1 4243 aa8.45□□□□□ -1.06
CUX1-209ENST00000487284 SPINK6Q6UWN8 80 aa8.44□□□□□ -1.06
CUX1-209ENST00000487284 MOBPQ13875 183 aa8.43□□□□□ -1.06
CUX1-209ENST00000487284 PCP4P48539 62 aa8.42□□□□□ -1.06
CUX1-209ENST00000487284 A0A087WSZ3 146 aa8.41□□□□□ -1.06
CUX1-209ENST00000487284 KRTAP4-5Q9BYR2 181 aa8.4□□□□□ -1.06
CUX1-209ENST00000487284 FAM229BQ4G0N7 80 aa8.39□□□□□ -1.07
CUX1-209ENST00000487284 HIST1H4AP62805 103 aaKnown RBP8.39□□□□□ -1.07
CUX1-209ENST00000487284 FAM236AA0A1B0GUQ0 79 aa8.38□□□□□ -1.07
CUX1-209ENST00000487284 FAM236BA0A1B0GV22 79 aa8.38□□□□□ -1.07
CUX1-209ENST00000487284 BPY2O14599 106 aa8.38□□□□□ -1.07
CUX1-209ENST00000487284 KRTAP1-4P0C5Y4 121 aa8.38□□□□□ -1.07
CUX1-209ENST00000487284 A0A087WVE0 104 aa8.37□□□□□ -1.07
CUX1-209ENST00000487284 LRP1Q07954 4544 aaKnown RBP8.37□□□□□ -1.07
CUX1-209ENST00000487284 SSBP3-AS1Q7Z2R9 100 aa8.35□□□□□ -1.07
CUX1-209ENST00000487284 FLG2Q5D862 2391 aaPredicted RBP8.35□□□□□ -1.07
CUX1-209ENST00000487284 A0A087X002 238 aa8.35□□□□□ -1.07
CUX1-209ENST00000487284 FAT3Q8TDW7 4589 aa8.35□□□□□ -1.07
CUX1-209ENST00000487284 MYCBP2O75592 4640 aa8.34□□□□□ -1.08
CUX1-209ENST00000487284 KRTAP13-2Q52LG2 175 aa8.33□□□□□ -1.08
CUX1-209ENST00000487284 PCLOQ9Y6V0 5065 aa8.33□□□□□ -1.08
CUX1-209ENST00000487284 IGKV4-1P06312 121 aa8.32□□□□□ -1.08
CUX1-209ENST00000487284 DSCR10P59022 87 aa8.32□□□□□ -1.08
CUX1-209ENST00000487284 CD164Q04900 197 aa8.32□□□□□ -1.08
CUX1-209ENST00000487284 LINC00472Q9H8W2 130 aa8.31□□□□□ -1.08
CUX1-209ENST00000487284 ABCA13Q86UQ4 5058 aa8.31□□□□□ -1.08
CUX1-209ENST00000487284 HRCT1Q6UXD1 115 aa8.31□□□□□ -1.08
CUX1-209ENST00000487284 Q8N9L7 120 aa8.31□□□□□ -1.08
CUX1-209ENST00000487284 SS18L2Q9UHA2 77 aa8.31□□□□□ -1.08
CUX1-209ENST00000487284 ANAPC13Q9BS18 74 aa8.3□□□□□ -1.08
CUX1-209ENST00000487284 PRR26Q8N8Z3 221 aa8.28□□□□□ -1.08
CUX1-209ENST00000487284 ATOX1O00244 68 aa8.27□□□□□ -1.09
CUX1-209ENST00000487284 DEFB116Q30KQ4 102 aa8.27□□□□□ -1.09
CUX1-209ENST00000487284 Q96NJ1 140 aa8.27□□□□□ -1.09
CUX1-209ENST00000487284 K7EQZ3 153 aa8.26□□□□□ -1.09
CUX1-209ENST00000487284 J3KT08 172 aa8.25□□□□□ -1.09
CUX1-209ENST00000487284 TNXBP22105 4242 aa8.23□□□□□ -1.09
CUX1-209ENST00000487284 A8MWP4 228 aa8.22□□□□□ -1.09
CUX1-209ENST00000487284 TYMSOSQ8TAI1 123 aa8.22□□□□□ -1.09
CUX1-209ENST00000487284 ASB16-AS1Q495Z4 193 aa8.21□□□□□ -1.1
CUX1-209ENST00000487284 Q5XG85 94 aa8.2□□□□□ -1.1
CUX1-209ENST00000487284 PRR15Q8IV56 129 aa8.19□□□□□ -1.1
CUX1-209ENST00000487284 KRTAP10-8P60410 259 aa8.18□□□□□ -1.1
CUX1-209ENST00000487284 SERP2Q8N6R1 65 aa8.18□□□□□ -1.1
CUX1-209ENST00000487284 OXTP01178 125 aa8.17□□□□□ -1.1
CUX1-209ENST00000487284 HCG22E2RYF7 251 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms