RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 LOC285095A0A1B0GVY8 99 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 PPP1R17O96001 155 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 SMIM13P0DJ93 91 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 SAA2P0DJI9 122 aaPredicted RBP1.32□□□□□ -2.2
VPS41-213ENST00000485955 RNASE3P12724 160 aaKnown RBP1.32□□□□□ -2.2
VPS41-213ENST00000485955 CCL3L1P16619 93 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 TMEM14BQ9NUH8 114 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 KLK9Q9UKQ9 250 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 V9GYH0 126 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 LRP1BQ9NZR2 4599 aa1.32□□□□□ -2.2
VPS41-213ENST00000485955 MYMXA0A1B0GTQ4 84 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 FAM223BA6NKX1 122 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 IQCF6A8MYZ5 107 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 DNAL4O96015 105 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 SFTA3P0C7M3 94 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 RPL37AP61513 92 aaKnown RBP1.31□□□□□ -2.2
VPS41-213ENST00000485955 PLGLAQ15195 96 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 Q86TA4 180 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 VPS13BQ7Z7G8 4022 aa1.31□□□□□ -2.2
VPS41-213ENST00000485955 SRRM2Q9UQ35 2752 aaKnown RBP1.3□□□□□ -2.2
VPS41-213ENST00000485955 FAT3Q8TDW7 4589 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 A0A087WXM4 84 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 IGKV3D-7A0A0C4DH55 119 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 IGKV3OR2-268A0A0C4DH90 116 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 H3BRN7 92 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 COX6B1P14854 86 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 TFF3Q07654 80 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 SPAG11BQ08648 103 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 DEFB121Q5J5C9 76 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 FAM74A4Q5TZK3 123 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 SPAG11AQ6PDA7 123 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 COX7B2Q8TF08 81 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 AMELXQ99217 191 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 WFDC10AQ9H1F0 79 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 PSENENQ9NZ42 101 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 ARL2-SNX15V9GYD0 113 aa1.3□□□□□ -2.2
VPS41-213ENST00000485955 DNAH5Q8TE73 4624 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 IGLV3-32A0A0A0MS00 114 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 NBDYA0A0U1RRE5 68 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 LCE6AA0A183 80 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 A0A1B0GWA3 101 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 CEBPZOSA8MTT3 80 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 GCHFRP30047 84 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 CCL18P55774 89 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 ATP5EP2Q5VTU8 51 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 Q6JHZ5 121 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 C6orf201Q7Z4U5 140 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 ZNF563Q8TA94 476 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 PRR15LQ9BU68 103 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 SSPOA2VEC9 5147 aa1.29□□□□□ -2.2
VPS41-213ENST00000485955 ALPK2Q86TB3 2170 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 DNAJC13O75165 2243 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 A0A087WTM6 91 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 IGKV2-40A0A087WW87 121 aaPredicted RBP1.28□□□□□ -2.2
VPS41-213ENST00000485955 TRGV4A0A0C4DH28 118 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 IGKV2D-40P01614 121 aaPredicted RBP1.28□□□□□ -2.2
VPS41-213ENST00000485955 ARMS2P0C7Q2 107 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 COX8AP10176 69 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 FXYD3Q14802 87 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 DEFB109BQ30KR1 87 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 LINC00322Q6ZN03 302 aaPredicted RBP1.28□□□□□ -2.2
VPS41-213ENST00000485955 PPP1R1CQ8WVI7 109 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 TXNDC17Q9BRA2 123 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 PROK2Q9HC23 129 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 TMEM14CQ9P0S9 112 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 R4GMQ9 66 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 FREM3P0C091 2139 aa1.28□□□□□ -2.2
VPS41-213ENST00000485955 SNRNP200O75643 2136 aaKnown RBP1.27□□□□□ -2.21
VPS41-213ENST00000485955 SPTBP11277 2137 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 LRP1Q07954 4544 aaKnown RBP1.27□□□□□ -2.21
VPS41-213ENST00000485955 TRBV6-5A0A0K0K1A5 114 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 IGKV2-29A2NJV5 120 aaPredicted RBP1.27□□□□□ -2.21
VPS41-213ENST00000485955 F8VRH5 84 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 FXYD1O00168 92 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 LEPROTL1O95214 131 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 SPINT3P49223 89 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 C5orf56Q8N8D9 126 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 TTTY12Q9BZ98 90 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 HILPDAQ9Y5L2 63 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 V9GYV3 84 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 TNXBP22105 4242 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 EXPH5Q8NEV8 1989 aa1.27□□□□□ -2.21
VPS41-213ENST00000485955 A0A087WVE0 104 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 LOC110117498A0A087WWA1 95 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 A0A096LNT2 108 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 D6R8Y8 96 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 UQCR11O14957 56 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 INE1O15225 51 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 COA5Q86WW8 74 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 MUSTN1Q8IVN3 82 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 FDCSPQ8NFU4 85 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 UBE2D4Q9Y2X8 147 aa1.26□□□□□ -2.21
VPS41-213ENST00000485955 KIAA2026Q5HYC2 2103 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.25□□□□□ -2.21
VPS41-213ENST00000485955 CTXND1A0A1B0GTU2 59 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 M0R135 149 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 M0R2N4 97 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 C3orf79P0CE67 100 aa1.25□□□□□ -2.21
VPS41-213ENST00000485955 IFI27P40305 119 aaPredicted RBP1.25□□□□□ -2.21
VPS41-213ENST00000485955 BAGE3Q86Y29 109 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 288.1 ms