RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 HIST1H2BBP33778 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST1H2BDP58876 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 NPC2P61916 151 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 SNRPEP62304 92 aaKnown RBP2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST1H2BCP62807 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST2H2BEQ16778 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 C6orf99Q4VX62 202 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 COA6Q5JTJ3 125 aaKnown RBP2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST1H2BHQ93079 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST1H2BNQ99877 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 HIST1H2BMQ99879 126 aa2.29□□□□□ -2.04
VPS13D-208ENST00000481484 TRAV13-2A0A0B4J235 113 aa2.28□□□□□ -2.04
VPS13D-208ENST00000481484 F8WEM9 126 aa2.28□□□□□ -2.04
VPS13D-208ENST00000481484 TCL1BO95988 128 aa2.28□□□□□ -2.04
VPS13D-208ENST00000481484 KRTAP10-6P60371 365 aaPredicted RBP2.28□□□□□ -2.04
VPS13D-208ENST00000481484 ADAMTSL4-AS1Q5T5F5 129 aa2.28□□□□□ -2.04
VPS13D-208ENST00000481484 ST20-AS1Q8NBB2 130 aa2.28□□□□□ -2.04
VPS13D-208ENST00000481484 C3orf79P0CE67 100 aa2.27□□□□□ -2.05
VPS13D-208ENST00000481484 KRTAP10-7P60409 375 aaPredicted RBP2.27□□□□□ -2.05
VPS13D-208ENST00000481484 TAL2Q16559 108 aa2.27□□□□□ -2.05
VPS13D-208ENST00000481484 Q6JHZ5 121 aa2.27□□□□□ -2.05
VPS13D-208ENST00000481484 PPDPFLQ8WWR9 84 aa2.27□□□□□ -2.05
VPS13D-208ENST00000481484 A6NDN8 102 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 HSBP1L1C9JCN9 74 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 SCGB1D1O95968 90 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 KRTDAPP60985 99 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 VAMP3Q15836 100 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 Q1RN00 199 aa2.26□□□□□ -2.05
VPS13D-208ENST00000481484 CLEC2BQ92478 149 aa2.25□□□□□ -2.05
VPS13D-208ENST00000481484 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
VPS13D-208ENST00000481484 IGLV8-61A0A075B6I0 122 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 SNCGO76070 127 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 RPL37P61927 97 aaKnown RBP2.24□□□□□ -2.05
VPS13D-208ENST00000481484 PCOTHQ58A44 107 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 BVES-AS1Q5T3Y7 98 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 C1orf195Q5TG92 126 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 HRCT1Q6UXD1 115 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 SMIM29Q86T20 159 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 TTTY13Q9BZ97 58 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 SS18L2Q9UHA2 77 aa2.24□□□□□ -2.05
VPS13D-208ENST00000481484 hADV29S1A0JD25 119 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 C9orf92A6NGG3 77 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 OCIAD2Q56VL3 154 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.23□□□□□ -2.05
VPS13D-208ENST00000481484 COX6B2Q6YFQ2 88 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 Q6ZQY7 126 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 SLC7A5P1Q8MH63 180 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 DEFB105AQ8NG35 78 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 SMIM11BQ8TCY0 68 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 KRTAP4-1Q9BYQ7 146 aa2.23□□□□□ -2.05
VPS13D-208ENST00000481484 TRBV7-7A0A0K0K1E9 115 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 MT3P25713 68 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 S100A2P29034 98 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 MT1HP80294 61 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
VPS13D-208ENST00000481484 LINC00575Q6W349 94 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 Q75L30 129 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 PCP2Q8IVA1 136 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 MUSTN1Q8IVN3 82 aa2.22□□□□□ -2.05
VPS13D-208ENST00000481484 KRTAP19-2Q3LHN2 52 aa2.21□□□□□ -2.06
VPS13D-208ENST00000481484 Q6Q795 121 aa2.21□□□□□ -2.06
VPS13D-208ENST00000481484 ATOH7Q8N100 152 aa2.21□□□□□ -2.06
VPS13D-208ENST00000481484 C12orf57Q99622 126 aa2.21□□□□□ -2.06
VPS13D-208ENST00000481484 A0A1B0GX51 115 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 H3BQ85 93 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 LST1O00453 97 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 DLEU1O43261 78 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 S100A6P06703 90 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 LCE1EQ5T753 118 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 IGFL1Q6UW32 110 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 ATP11AUNQ6ZP68 121 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 HIST3H2BBQ8N257 126 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 HIST1H4GQ99525 98 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 HIST1H2BLQ99880 126 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
VPS13D-208ENST00000481484 A0A0B4J2C4 111 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 H0YGX0 51 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 M0R2T5 61 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 COX8AP10176 69 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 SNHG12Q9BXW3 62 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 HIGD1BQ9P298 99 aa2.19□□□□□ -2.06
VPS13D-208ENST00000481484 CFC1P0CG37 223 aa2.18□□□□□ -2.06
VPS13D-208ENST00000481484 S100A1P23297 94 aa2.18□□□□□ -2.06
VPS13D-208ENST00000481484 TEN1Q86WV5 123 aa2.18□□□□□ -2.06
VPS13D-208ENST00000481484 RAB37Q96AX2 223 aa2.18□□□□□ -2.06
VPS13D-208ENST00000481484 TRBV20-1A0A075B6N2 111 aa2.17□□□□□ -2.06
VPS13D-208ENST00000481484 DNAL4O96015 105 aa2.17□□□□□ -2.06
VPS13D-208ENST00000481484 OBSCN-AS1Q96MR7 158 aa2.17□□□□□ -2.06
VPS13D-208ENST00000481484 C20orf166-AS1Q96NR2 134 aa2.17□□□□□ -2.06
VPS13D-208ENST00000481484 A0A0G2JQZ4 141 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 A8MUU9 505 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 H3BUT2 72 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 PCP4P48539 62 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 SIGMAR1Q99720 223 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 VAMP8Q9BV40 100 aa2.16□□□□□ -2.06
VPS13D-208ENST00000481484 A0A087WSZ3 146 aa2.15□□□□□ -2.07
VPS13D-208ENST00000481484 NDUFV3P56181 108 aaKnown RBP2.15□□□□□ -2.07
VPS13D-208ENST00000481484 TRBV7-4A0A0J9YYF1 115 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms