RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 Q5XG85 94 aa11.43□□□□□ -0.58
COL9A3-205ENST00000466192 Q6ZVQ6 151 aa11.43□□□□□ -0.58
COL9A3-205ENST00000466192 SPACA4Q8TDM5 124 aa11.43□□□□□ -0.58
COL9A3-205ENST00000466192 HYDINQ4G0P3 5121 aa11.42□□□□□ -0.58
COL9A3-205ENST00000466192 C4orf26Q17RF5 130 aa11.4□□□□□ -0.58
COL9A3-205ENST00000466192 BCE1O60756 84 aa11.4□□□□□ -0.59
COL9A3-205ENST00000466192 HAMPP81172 84 aa11.39□□□□□ -0.59
COL9A3-205ENST00000466192 HIGD2AQ9BW72 106 aa11.38□□□□□ -0.59
COL9A3-205ENST00000466192 C3orf84H3BNL1 204 aa11.38□□□□□ -0.59
COL9A3-205ENST00000466192 EPM2AB3EWF7 344 aa11.37□□□□□ -0.59
COL9A3-205ENST00000466192 TNP2Q05952 138 aa11.37□□□□□ -0.59
COL9A3-205ENST00000466192 SRRM2Q9UQ35 2752 aaKnown RBP11.37□□□□□ -0.59
COL9A3-205ENST00000466192 DNAH11Q96DT5 4516 aa11.36□□□□□ -0.59
COL9A3-205ENST00000466192 IGLV5-52A0A0A0MRZ9 124 aa11.35□□□□□ -0.59
COL9A3-205ENST00000466192 HRCT1Q6UXD1 115 aa11.35□□□□□ -0.59
COL9A3-205ENST00000466192 DNAH8Q96JB1 4490 aa11.35□□□□□ -0.59
COL9A3-205ENST00000466192 C20orf197Q8N268 126 aa11.34□□□□□ -0.59
COL9A3-205ENST00000466192 C1orf137Q5JT78 98 aa11.34□□□□□ -0.59
COL9A3-205ENST00000466192 DNAH5Q8TE73 4624 aa11.33□□□□□ -0.59
COL9A3-205ENST00000466192 FAM236DA0A1B0GTK5 79 aa11.33□□□□□ -0.6
COL9A3-205ENST00000466192 FAM236CP0DP71 79 aa11.33□□□□□ -0.6
COL9A3-205ENST00000466192 SMIM29Q86T20 159 aa11.33□□□□□ -0.6
COL9A3-205ENST00000466192 H0Y9J4 135 aa11.31□□□□□ -0.6
COL9A3-205ENST00000466192 TRAV7A0A075B6U4 112 aa11.3□□□□□ -0.6
COL9A3-205ENST00000466192 SCXQ7RTU7 201 aa11.3□□□□□ -0.6
COL9A3-205ENST00000466192 A0A1W2PNM2 257 aa11.3□□□□□ -0.6
COL9A3-205ENST00000466192 CXCL6P80162 114 aa11.3□□□□□ -0.6
COL9A3-205ENST00000466192 FAT2Q9NYQ8 4349 aa11.29□□□□□ -0.6
COL9A3-205ENST00000466192 H7BZZ5 65 aa11.29□□□□□ -0.6
COL9A3-205ENST00000466192 UBE2AP49459 152 aa11.29□□□□□ -0.6
COL9A3-205ENST00000466192 SERP1Q9Y6X1 66 aa11.28□□□□□ -0.6
COL9A3-205ENST00000466192 PKD1P98161 4303 aa11.27□□□□□ -0.6
COL9A3-205ENST00000466192 F8WEM9 126 aa11.27□□□□□ -0.6
COL9A3-205ENST00000466192 NREPQ16612 68 aa11.27□□□□□ -0.6
COL9A3-205ENST00000466192 PLAC8Q9NZF1 115 aa11.27□□□□□ -0.6
COL9A3-205ENST00000466192 KLKP1Q107X0 134 aa11.27□□□□□ -0.61
COL9A3-205ENST00000466192 KRTAP10-2P60368 255 aa11.26□□□□□ -0.61
COL9A3-205ENST00000466192 KRTAP13-1Q8IUC0 172 aa11.26□□□□□ -0.61
COL9A3-205ENST00000466192 Q8NBF4 154 aa11.26□□□□□ -0.61
COL9A3-205ENST00000466192 A0A0G2JQZ4 141 aa11.24□□□□□ -0.61
COL9A3-205ENST00000466192 SACSQ9NZJ4 4579 aa11.24□□□□□ -0.61
COL9A3-205ENST00000466192 SPRR4Q96PI1 79 aa11.21□□□□□ -0.61
COL9A3-205ENST00000466192 A0A1B0GW54 56 aa11.21□□□□□ -0.62
COL9A3-205ENST00000466192 IGFL1Q6UW32 110 aa11.21□□□□□ -0.62
COL9A3-205ENST00000466192 PSORS1C2Q9UIG4 136 aa11.2□□□□□ -0.62
COL9A3-205ENST00000466192 Q8N9L7 120 aa11.19□□□□□ -0.62
COL9A3-205ENST00000466192 BPY2O14599 106 aa11.18□□□□□ -0.62
COL9A3-205ENST00000466192 SPRR1BP22528 89 aa11.18□□□□□ -0.62
COL9A3-205ENST00000466192 IGLV8-61A0A075B6I0 122 aa11.17□□□□□ -0.62
COL9A3-205ENST00000466192 FAM30AQ9NZY2 134 aa11.17□□□□□ -0.62
COL9A3-205ENST00000466192 PRO0628Q9UI54 55 aa11.15□□□□□ -0.62
COL9A3-205ENST00000466192 SMIM26A0A096LP01 95 aa11.14□□□□□ -0.63
COL9A3-205ENST00000466192 NDUFC1O43677 76 aa11.14□□□□□ -0.63
COL9A3-205ENST00000466192 SNURFQ9Y675 71 aa11.14□□□□□ -0.63
COL9A3-205ENST00000466192 LINC00336Q6ZUF6 198 aa11.13□□□□□ -0.63
COL9A3-205ENST00000466192 IGKV4-1P06312 121 aa11.13□□□□□ -0.63
COL9A3-205ENST00000466192 FP248Q71RG6 208 aaPredicted RBP11.11□□□□□ -0.63
COL9A3-205ENST00000466192 CIRBP-AS1Q8TBR5 109 aa11.11□□□□□ -0.63
COL9A3-205ENST00000466192 ATP5EP56381 51 aaPredicted RBP11.11□□□□□ -0.63
COL9A3-205ENST00000466192 KRTAP10-1P60331 282 aa11.11□□□□□ -0.63
COL9A3-205ENST00000466192 A0A087WSZ3 146 aa11.09□□□□□ -0.63
COL9A3-205ENST00000466192 Q6ZSA8 131 aa11.09□□□□□ -0.63
COL9A3-205ENST00000466192 ZNF861PO60384 105 aa11.08□□□□□ -0.64
COL9A3-205ENST00000466192 LCE6AA0A183 80 aa11.05□□□□□ -0.64
COL9A3-205ENST00000466192 LINC00483Q53H64 154 aa11.04□□□□□ -0.64
COL9A3-205ENST00000466192 LRP1BQ9NZR2 4599 aa11.04□□□□□ -0.64
COL9A3-205ENST00000466192 PKHD1P08F94 4074 aa11.04□□□□□ -0.64
COL9A3-205ENST00000466192 IGLV9-49A0A0B4J1Y8 123 aa11.04□□□□□ -0.64
COL9A3-205ENST00000466192 IGLV7-43P04211 117 aa11.03□□□□□ -0.64
COL9A3-205ENST00000466192 DSCR10P59022 87 aa11.03□□□□□ -0.64
COL9A3-205ENST00000466192 DEFB116Q30KQ4 102 aa11.03□□□□□ -0.64
COL9A3-205ENST00000466192 ZNF706Q9Y5V0 76 aaPredicted RBP11.01□□□□□ -0.65
COL9A3-205ENST00000466192 TMEM254Q8TBM7 123 aa11.01□□□□□ -0.65
COL9A3-205ENST00000466192 K7EQZ3 153 aa11□□□□□ -0.65
COL9A3-205ENST00000466192 ANAPC11Q9NYG5 84 aa10.98□□□□□ -0.65
COL9A3-205ENST00000466192 RYR2Q92736 4967 aa10.97□□□□□ -0.65
COL9A3-205ENST00000466192 OCR1Q9BZK8 76 aa10.94□□□□□ -0.66
COL9A3-205ENST00000466192 KMT2CQ8NEZ4 4911 aaKnown RBP10.94□□□□□ -0.66
COL9A3-205ENST00000466192 VPS13BQ7Z7G8 4022 aa10.94□□□□□ -0.66
COL9A3-205ENST00000466192 A0A0U1RQV1 116 aa10.92□□□□□ -0.66
COL9A3-205ENST00000466192 MOBPQ13875 183 aa10.92□□□□□ -0.66
COL9A3-205ENST00000466192 RPL37AP61513 92 aaKnown RBP10.92□□□□□ -0.66
COL9A3-205ENST00000466192 DYNC1H1Q14204 4646 aaKnown RBP10.9□□□□□ -0.66
COL9A3-205ENST00000466192 FAM229BQ4G0N7 80 aa10.89□□□□□ -0.67
COL9A3-205ENST00000466192 LINC00472Q9H8W2 130 aa10.89□□□□□ -0.67
COL9A3-205ENST00000466192 A0A1B0GVY2 172 aa10.87□□□□□ -0.67
COL9A3-205ENST00000466192 HCG22E2RYF7 251 aa10.87□□□□□ -0.67
COL9A3-205ENST00000466192 BRK1Q8WUW1 75 aa10.87□□□□□ -0.67
COL9A3-205ENST00000466192 MPLKIPQ8TAP9 179 aa10.83□□□□□ -0.68
COL9A3-205ENST00000466192 WFDC13Q8IUB5 93 aa10.82□□□□□ -0.68
COL9A3-205ENST00000466192 A8MWP4 228 aa10.82□□□□□ -0.68
COL9A3-205ENST00000466192 PRR15Q8IV56 129 aa10.81□□□□□ -0.68
COL9A3-205ENST00000466192 Q96NJ1 140 aa10.79□□□□□ -0.68
COL9A3-205ENST00000466192 APOBP04114 4563 aaKnown RBP10.78□□□□□ -0.68
COL9A3-205ENST00000466192 C1orf195Q5TG92 126 aa10.77□□□□□ -0.69
COL9A3-205ENST00000466192 A0A087X002 238 aa10.76□□□□□ -0.69
COL9A3-205ENST00000466192 hDV103S1A0JD37 113 aa10.73□□□□□ -0.69
COL9A3-205ENST00000466192 KRTAP29-1A8MX34 341 aaPredicted RBP10.73□□□□□ -0.69
COL9A3-205ENST00000466192 CASC2Q6XLA1 102 aa10.73□□□□□ -0.69
COL9A3-205ENST00000466192 NDUFB1O75438 58 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms