RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 FBN3Q75N90 2809 aa12.39□□□□□ -0.43
HMGA1-205ENST00000447654 CAMK2N2Q96S95 79 aa12.39□□□□□ -0.43
HMGA1-205ENST00000447654 OXLD1Q5BKU9 147 aa12.38□□□□□ -0.43
HMGA1-205ENST00000447654 NOTCH1P46531 2555 aa12.38□□□□□ -0.43
HMGA1-205ENST00000447654 IGKV2D-24A0A075B6R9 120 aa12.36□□□□□ -0.43
HMGA1-205ENST00000447654 C9orf163Q8N9P6 203 aa12.36□□□□□ -0.43
HMGA1-205ENST00000447654 DNAH3Q8TD57 4116 aa12.36□□□□□ -0.43
HMGA1-205ENST00000447654 PRB2P02812 416 aaPredicted RBP12.35□□□□□ -0.43
HMGA1-205ENST00000447654 C11orf45Q8TAV5 145 aa12.35□□□□□ -0.43
HMGA1-205ENST00000447654 COL6A5A8TX70 2615 aa12.35□□□□□ -0.43
HMGA1-205ENST00000447654 KRTAP10-11P60412 298 aa12.35□□□□□ -0.43
HMGA1-205ENST00000447654 KRTAP24-1Q3LI83 254 aa12.35□□□□□ -0.43
HMGA1-205ENST00000447654 C8orf87E5RJ46 101 aa12.34□□□□□ -0.43
HMGA1-205ENST00000447654 H0Y9P7 68 aa12.34□□□□□ -0.43
HMGA1-205ENST00000447654 LINC01558Q9Y6Z2 57 aa12.34□□□□□ -0.43
HMGA1-205ENST00000447654 Q6ZRX8 168 aa12.33□□□□□ -0.44
HMGA1-205ENST00000447654 MOBPQ13875 183 aa12.33□□□□□ -0.44
HMGA1-205ENST00000447654 MDFIQ99750 246 aa12.33□□□□□ -0.44
HMGA1-205ENST00000447654 PLAC8Q9NZF1 115 aa12.33□□□□□ -0.44
HMGA1-205ENST00000447654 KRTAP29-1A8MX34 341 aaPredicted RBP12.32□□□□□ -0.44
HMGA1-205ENST00000447654 COA5Q86WW8 74 aa12.32□□□□□ -0.44
HMGA1-205ENST00000447654 NBEAL1Q6ZS30 2694 aa12.3□□□□□ -0.44
HMGA1-205ENST00000447654 IGLV7-46A0A075B6I9 117 aa12.3□□□□□ -0.44
HMGA1-205ENST00000447654 HTN3P15516 51 aa12.3□□□□□ -0.44
HMGA1-205ENST00000447654 NKAPP1Q8N9T2 125 aa12.3□□□□□ -0.44
HMGA1-205ENST00000447654 WFDC13Q8IUB5 93 aa12.27□□□□□ -0.45
HMGA1-205ENST00000447654 KRTAP4-16G5E9R7 235 aaPredicted RBP12.26□□□□□ -0.45
HMGA1-205ENST00000447654 SPART-AS1P0CW21 52 aa12.26□□□□□ -0.45
HMGA1-205ENST00000447654 C7orf33Q8WU49 177 aa12.26□□□□□ -0.45
HMGA1-205ENST00000447654 PLA2G2DQ9UNK4 145 aa12.26□□□□□ -0.45
HMGA1-205ENST00000447654 SPRR1AP35321 89 aa12.25□□□□□ -0.45
HMGA1-205ENST00000447654 CNBPP62633 177 aaKnown RBP12.23□□□□□ -0.45
HMGA1-205ENST00000447654 WFDC10BQ8IUB3 73 aa12.21□□□□□ -0.45
HMGA1-205ENST00000447654 CASC2Q6XLA1 102 aa12.2□□□□□ -0.46
HMGA1-205ENST00000447654 KRTAP26-1Q6PEX3 210 aa12.2□□□□□ -0.46
HMGA1-205ENST00000447654 IGLV5-37A0A075B6J1 123 aa12.19□□□□□ -0.46
HMGA1-205ENST00000447654 C15orf56Q8N910 161 aa12.19□□□□□ -0.46
HMGA1-205ENST00000447654 ASB16-AS1Q495Z4 193 aa12.18□□□□□ -0.46
HMGA1-205ENST00000447654 LINC00476Q8WZB0 136 aa12.18□□□□□ -0.46
HMGA1-205ENST00000447654 DEFB116Q30KQ4 102 aa12.16□□□□□ -0.46
HMGA1-205ENST00000447654 IGLV8-61A0A075B6I0 122 aa12.15□□□□□ -0.46
HMGA1-205ENST00000447654 A0A087X002 238 aa12.15□□□□□ -0.46
HMGA1-205ENST00000447654 IGLV1-50A0A075B6I6 118 aa12.15□□□□□ -0.47
HMGA1-205ENST00000447654 SERTAD4-AS1Q5TG53 156 aa12.14□□□□□ -0.47
HMGA1-205ENST00000447654 TLX1NBP0CAT3 122 aa12.13□□□□□ -0.47
HMGA1-205ENST00000447654 IGFL1Q6UW32 110 aa12.12□□□□□ -0.47
HMGA1-205ENST00000447654 MGAM2Q2M2H8 2515 aa12.12□□□□□ -0.47
HMGA1-205ENST00000447654 HUWE1Q7Z6Z7 4374 aaKnown RBP12.11□□□□□ -0.47
HMGA1-205ENST00000447654 A8MWP4 228 aa12.09□□□□□ -0.47
HMGA1-205ENST00000447654 SPAG11AQ6PDA7 123 aa12.09□□□□□ -0.47
HMGA1-205ENST00000447654 LINC00313P59037 77 aa12.08□□□□□ -0.48
HMGA1-205ENST00000447654 SPINK7P58062 85 aa12.08□□□□□ -0.48
HMGA1-205ENST00000447654 A0A087WSZ3 146 aa12.06□□□□□ -0.48
HMGA1-205ENST00000447654 RPL37AP8A6NKH3 93 aa12.06□□□□□ -0.48
HMGA1-205ENST00000447654 PLA2G1BP04054 148 aaKnown RBP12.06□□□□□ -0.48
HMGA1-205ENST00000447654 LINC01554Q52M75 96 aa12.05□□□□□ -0.48
HMGA1-205ENST00000447654 TP53AIP1Q9HCN2 124 aa12.03□□□□□ -0.48
HMGA1-205ENST00000447654 H3BS24 57 aa12.03□□□□□ -0.48
HMGA1-205ENST00000447654 LYSTQ99698 3801 aa12.03□□□□□ -0.48
HMGA1-205ENST00000447654 RPL37AP61513 92 aaKnown RBP12.02□□□□□ -0.49
HMGA1-205ENST00000447654 COL7A1Q02388 2944 aa12.01□□□□□ -0.49
HMGA1-205ENST00000447654 H3BNG1 76 aa12□□□□□ -0.49
HMGA1-205ENST00000447654 DEFB131BA0A096LNP1 70 aa11.98□□□□□ -0.49
HMGA1-205ENST00000447654 LINC00472Q9H8W2 130 aa11.98□□□□□ -0.49
HMGA1-205ENST00000447654 DNAH1Q9P2D7 4330 aa11.97□□□□□ -0.49
HMGA1-205ENST00000447654 STAB2Q8WWQ8 2551 aa11.96□□□□□ -0.49
HMGA1-205ENST00000447654 Q6ZR54 194 aa11.95□□□□□ -0.5
HMGA1-205ENST00000447654 REG3GQ6UW15 175 aa11.95□□□□□ -0.5
HMGA1-205ENST00000447654 MMP24-AS1A0A0U1RRL7 71 aa11.94□□□□□ -0.5
HMGA1-205ENST00000447654 HRES1P13985 223 aa11.94□□□□□ -0.5
HMGA1-205ENST00000447654 K7EIL1 84 aa11.92□□□□□ -0.5
HMGA1-205ENST00000447654 PCOTHQ58A44 107 aa11.91□□□□□ -0.5
HMGA1-205ENST00000447654 PRAC1Q96KF2 57 aa11.91□□□□□ -0.5
HMGA1-205ENST00000447654 DNAH9Q9NYC9 4486 aa11.9□□□□□ -0.5
HMGA1-205ENST00000447654 A0A0G2JQZ4 141 aa11.88□□□□□ -0.51
HMGA1-205ENST00000447654 A0A1W2PNN7 141 aa11.88□□□□□ -0.51
HMGA1-205ENST00000447654 FAM168BA1KXE4 195 aa11.88□□□□□ -0.51
HMGA1-205ENST00000447654 KRTAP7-1Q8IUC3 87 aa11.88□□□□□ -0.51
HMGA1-205ENST00000447654 DNAH10Q8IVF4 4471 aa11.87□□□□□ -0.51
HMGA1-205ENST00000447654 LINC01556Q5JQF7 62 aa11.86□□□□□ -0.51
HMGA1-205ENST00000447654 IGKV2-24A0A0C4DH68 120 aa11.86□□□□□ -0.51
HMGA1-205ENST00000447654 CSMD3Q7Z407 3707 aa11.85□□□□□ -0.51
HMGA1-205ENST00000447654 RTL8CO15255 209 aa11.84□□□□□ -0.51
HMGA1-205ENST00000447654 TENM2Q9NT68 2774 aa11.84□□□□□ -0.51
HMGA1-205ENST00000447654 SPRR1BP22528 89 aa11.82□□□□□ -0.52
HMGA1-205ENST00000447654 DNAH7Q8WXX0 4024 aa11.82□□□□□ -0.52
HMGA1-205ENST00000447654 H0Y9J4 135 aa11.81□□□□□ -0.52
HMGA1-205ENST00000447654 DNAH10OSP0CZ25 163 aa11.79□□□□□ -0.52
HMGA1-205ENST00000447654 CASC10Q5T4H9 136 aa11.77□□□□□ -0.53
HMGA1-205ENST00000447654 SPATA8Q6RVD6 105 aa11.77□□□□□ -0.53
HMGA1-205ENST00000447654 ADM2Q7Z4H4 148 aa11.75□□□□□ -0.53
HMGA1-205ENST00000447654 PRR26Q8N8Z3 221 aa11.75□□□□□ -0.53
HMGA1-205ENST00000447654 PLECQ15149 4684 aaKnown RBP11.73□□□□□ -0.53
HMGA1-205ENST00000447654 DYNC2H1Q8NCM8 4307 aaKnown RBP11.72□□□□□ -0.53
HMGA1-205ENST00000447654 C8orf17Q9NRJ1 99 aa11.71□□□□□ -0.54
HMGA1-205ENST00000447654 RETNLBQ9BQ08 111 aa11.7□□□□□ -0.54
HMGA1-205ENST00000447654 ACYP2P14621 99 aa11.69□□□□□ -0.54
HMGA1-205ENST00000447654 PRKDCP78527 4128 aaKnown RBP11.68□□□□□ -0.54
HMGA1-205ENST00000447654 PRLHP81277 87 aa11.68□□□□□ -0.54
HMGA1-205ENST00000447654 KRTAP1-5Q9BYS1 174 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms