RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 TTTY13Q9BZ97 58 aa7.19□□□□□ -1.26
HMGN1-208ENST00000443046 NHP2Q9NX24 153 aaKnown RBP7.19□□□□□ -1.26
HMGN1-208ENST00000443046 IGFL1Q6UW32 110 aa7.18□□□□□ -1.26
HMGN1-208ENST00000443046 CLEC2BQ92478 149 aa7.18□□□□□ -1.26
HMGN1-208ENST00000443046 F8WEM9 126 aa7.17□□□□□ -1.26
HMGN1-208ENST00000443046 LINC00846Q9NV44 126 aa7.16□□□□□ -1.26
HMGN1-208ENST00000443046 A6NDN8 102 aa7.15□□□□□ -1.26
HMGN1-208ENST00000443046 NDUFA5Q16718 116 aa7.15□□□□□ -1.26
HMGN1-208ENST00000443046 KRTAP6-3Q3LI67 103 aa7.15□□□□□ -1.26
HMGN1-208ENST00000443046 MPLKIPQ8TAP9 179 aa7.15□□□□□ -1.26
HMGN1-208ENST00000443046 SYS1-DBNDD2H3BUS1 97 aa7.14□□□□□ -1.27
HMGN1-208ENST00000443046 KRTAP16-1A8MUX0 517 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 LST1O00453 97 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 IFITM1P13164 125 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 OCIAD2Q56VL3 154 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 LINC01545Q5VT33 79 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 SMIM11BQ8TCY0 68 aa7.13□□□□□ -1.27
HMGN1-208ENST00000443046 TRAV13-2A0A0B4J235 113 aa7.12□□□□□ -1.27
HMGN1-208ENST00000443046 NEBP20929 6669 aa7.12□□□□□ -1.27
HMGN1-208ENST00000443046 LINC00575Q6W349 94 aa7.11□□□□□ -1.27
HMGN1-208ENST00000443046 COPS9Q8WXC6 57 aa7.11□□□□□ -1.27
HMGN1-208ENST00000443046 Q6ZQY7 126 aa7.1□□□□□ -1.27
HMGN1-208ENST00000443046 Q6ZVH6 145 aa7.09□□□□□ -1.27
HMGN1-208ENST00000443046 MUSTN1Q8IVN3 82 aa7.09□□□□□ -1.27
HMGN1-208ENST00000443046 FAM236DA0A1B0GTK5 79 aa7.08□□□□□ -1.28
HMGN1-208ENST00000443046 FAM236CP0DP71 79 aa7.08□□□□□ -1.28
HMGN1-208ENST00000443046 HRES1P13985 223 aa7.08□□□□□ -1.28
HMGN1-208ENST00000443046 hADV29S1A0JD25 119 aa7.07□□□□□ -1.28
HMGN1-208ENST00000443046 PET117Q6UWS5 81 aa7.07□□□□□ -1.28
HMGN1-208ENST00000443046 SCGB1D4Q6XE38 83 aa7.07□□□□□ -1.28
HMGN1-208ENST00000443046 SLC7A5P1Q8MH63 180 aa7.07□□□□□ -1.28
HMGN1-208ENST00000443046 VAMP3Q15836 100 aa7.05□□□□□ -1.28
HMGN1-208ENST00000443046 RBM12B-AS1Q9P1G2 102 aa7.04□□□□□ -1.28
HMGN1-208ENST00000443046 PPDPFLQ8WWR9 84 aa7.03□□□□□ -1.28
HMGN1-208ENST00000443046 SS18L2Q9UHA2 77 aa7.03□□□□□ -1.28
HMGN1-208ENST00000443046 NOTCH2NLQ7Z3S9 236 aa7.02□□□□□ -1.29
HMGN1-208ENST00000443046 COLCA2A8K830 154 aa7.01□□□□□ -1.29
HMGN1-208ENST00000443046 H3BUT2 72 aa7.01□□□□□ -1.29
HMGN1-208ENST00000443046 DSCR10P59022 87 aa7.01□□□□□ -1.29
HMGN1-208ENST00000443046 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.01□□□□□ -1.29
HMGN1-208ENST00000443046 MUC12Q9UKN1 5478 aa7□□□□□ -1.29
HMGN1-208ENST00000443046 ANKRD39Q53RE8 183 aa7□□□□□ -1.29
HMGN1-208ENST00000443046 SCGB1D1O95968 90 aa6.99□□□□□ -1.29
HMGN1-208ENST00000443046 C3orf79P0CE67 100 aa6.99□□□□□ -1.29
HMGN1-208ENST00000443046 A6NJY4 79 aa6.98□□□□□ -1.29
HMGN1-208ENST00000443046 SNHG12Q9BXW3 62 aa6.98□□□□□ -1.29
HMGN1-208ENST00000443046 TEN1Q86WV5 123 aa6.97□□□□□ -1.29
HMGN1-208ENST00000443046 HIST1H2BKO60814 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BJP06899 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BOP23527 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BBP33778 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BDP58876 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BCP62807 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST2H2BEQ16778 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BHQ93079 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BNQ99877 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 HIST1H2BMQ99879 126 aa6.95□□□□□ -1.3
HMGN1-208ENST00000443046 A0A087WSZ3 146 aa6.94□□□□□ -1.3
HMGN1-208ENST00000443046 LINC00313P59037 77 aa6.94□□□□□ -1.3
HMGN1-208ENST00000443046 LCE3BQ5TA77 95 aa6.93□□□□□ -1.3
HMGN1-208ENST00000443046 A8MWP4 228 aa6.89□□□□□ -1.31
HMGN1-208ENST00000443046 KRTDAPP60985 99 aa6.89□□□□□ -1.31
HMGN1-208ENST00000443046 BVES-AS1Q5T3Y7 98 aa6.89□□□□□ -1.31
HMGN1-208ENST00000443046 MTURNQ8N3F0 131 aa6.89□□□□□ -1.31
HMGN1-208ENST00000443046 ATOH7Q8N100 152 aa6.88□□□□□ -1.31
HMGN1-208ENST00000443046 SIGMAR1Q99720 223 aa6.88□□□□□ -1.31
HMGN1-208ENST00000443046 NDUFV3P56181 108 aaKnown RBP6.87□□□□□ -1.31
HMGN1-208ENST00000443046 Q8N9P0 234 aaPredicted RBP6.85□□□□□ -1.31
HMGN1-208ENST00000443046 A0A1W2PNM2 257 aa6.84□□□□□ -1.31
HMGN1-208ENST00000443046 IGKV4-1P06312 121 aa6.84□□□□□ -1.31
HMGN1-208ENST00000443046 COA6Q5JTJ3 125 aaKnown RBP6.84□□□□□ -1.31
HMGN1-208ENST00000443046 C12orf57Q99622 126 aa6.84□□□□□ -1.31
HMGN1-208ENST00000443046 SNRPEP62304 92 aaKnown RBP6.82□□□□□ -1.32
HMGN1-208ENST00000443046 H3BMG7 143 aa6.81□□□□□ -1.32
HMGN1-208ENST00000443046 KRTAP4-8A0A0G2JLE6 195 aa6.79□□□□□ -1.32
HMGN1-208ENST00000443046 SPINK7P58062 85 aa6.79□□□□□ -1.32
HMGN1-208ENST00000443046 KRTAP20-1Q3LI63 56 aa6.79□□□□□ -1.32
HMGN1-208ENST00000443046 FAM218AQ96MZ4 157 aa6.79□□□□□ -1.32
HMGN1-208ENST00000443046 LINC00472Q9H8W2 130 aa6.79□□□□□ -1.32
HMGN1-208ENST00000443046 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
HMGN1-208ENST00000443046 KRTAP9-4Q9BYQ2 154 aa6.78□□□□□ -1.32
HMGN1-208ENST00000443046 MDN1Q9NU22 5596 aa6.76□□□□□ -1.33
HMGN1-208ENST00000443046 IGHV6-1A0A0B4J1U7 121 aa6.76□□□□□ -1.33
HMGN1-208ENST00000443046 TRBV7-4A0A0J9YYF1 115 aa6.76□□□□□ -1.33
HMGN1-208ENST00000443046 H0YGX0 51 aa6.76□□□□□ -1.33
HMGN1-208ENST00000443046 ZCCHC13Q8WW36 166 aaKnown RBP6.76□□□□□ -1.33
HMGN1-208ENST00000443046 SNCGO76070 127 aa6.75□□□□□ -1.33
HMGN1-208ENST00000443046 DEFB116Q30KQ4 102 aa6.75□□□□□ -1.33
HMGN1-208ENST00000443046 KMT2DO14686 5537 aa6.72□□□□□ -1.33
HMGN1-208ENST00000443046 C8orf87E5RJ46 101 aa6.71□□□□□ -1.34
HMGN1-208ENST00000443046 GHRHP01286 108 aa6.71□□□□□ -1.34
HMGN1-208ENST00000443046 FABP2P12104 132 aa6.71□□□□□ -1.34
HMGN1-208ENST00000443046 RAB37Q96AX2 223 aa6.71□□□□□ -1.34
HMGN1-208ENST00000443046 A0A1B0GX51 115 aa6.7□□□□□ -1.34
HMGN1-208ENST00000443046 S100A1P23297 94 aa6.7□□□□□ -1.34
HMGN1-208ENST00000443046 HIST1H4GQ99525 98 aa6.7□□□□□ -1.34
HMGN1-208ENST00000443046 A0A1B0GVX0 72 aa6.69□□□□□ -1.34
HMGN1-208ENST00000443046 WFDC13Q8IUB5 93 aa6.69□□□□□ -1.34
HMGN1-208ENST00000443046 ANKRD29Q8N6D5 301 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms