RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 FAM168BA1KXE4 195 aa5.37□□□□□ -1.55
TMEM39A-202ENST00000438581 Q9BRP9 147 aa5.37□□□□□ -1.55
TMEM39A-202ENST00000438581 OBSCN-AS1Q96MR7 158 aa5.37□□□□□ -1.55
TMEM39A-202ENST00000438581 CIRBP-AS1Q8TBR5 109 aa5.37□□□□□ -1.55
TMEM39A-202ENST00000438581 CASC10Q5T4H9 136 aa5.37□□□□□ -1.55
TMEM39A-202ENST00000438581 TRBV7-4A0A0J9YYF1 115 aa5.36□□□□□ -1.55
TMEM39A-202ENST00000438581 C15orf56Q8N910 161 aa5.36□□□□□ -1.55
TMEM39A-202ENST00000438581 CSMD1Q96PZ7 3565 aa5.35□□□□□ -1.55
TMEM39A-202ENST00000438581 RTL8CO15255 209 aa5.35□□□□□ -1.55
TMEM39A-202ENST00000438581 DEFB116Q30KQ4 102 aa5.35□□□□□ -1.55
TMEM39A-202ENST00000438581 A0A087WSZ3 146 aa5.35□□□□□ -1.55
TMEM39A-202ENST00000438581 PRR15LQ9BU68 103 aa5.35□□□□□ -1.55
TMEM39A-202ENST00000438581 H3BPC8 53 aa5.34□□□□□ -1.55
TMEM39A-202ENST00000438581 C16orf90A8MZG2 172 aa5.34□□□□□ -1.56
TMEM39A-202ENST00000438581 IGKV4-1P06312 121 aa5.34□□□□□ -1.56
TMEM39A-202ENST00000438581 J3QL48 77 aa5.33□□□□□ -1.56
TMEM39A-202ENST00000438581 LOC101927531A0A1B0GV80 90 aa5.33□□□□□ -1.56
TMEM39A-202ENST00000438581 FAM104AQ969W3 186 aa5.33□□□□□ -1.56
TMEM39A-202ENST00000438581 ST20-AS1Q8NBB2 130 aa5.32□□□□□ -1.56
TMEM39A-202ENST00000438581 APLNQ9ULZ1 77 aa5.32□□□□□ -1.56
TMEM39A-202ENST00000438581 Q6ZRX8 168 aa5.31□□□□□ -1.56
TMEM39A-202ENST00000438581 SPANXA2-OT1Q8N9U9 137 aa5.31□□□□□ -1.56
TMEM39A-202ENST00000438581 Q5VV11 94 aa5.3□□□□□ -1.56
TMEM39A-202ENST00000438581 ZFHX3Q15911 3703 aa5.3□□□□□ -1.56
TMEM39A-202ENST00000438581 IGLV6-57P01721 117 aa5.3□□□□□ -1.56
TMEM39A-202ENST00000438581 C9orf129Q5T035 196 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-202ENST00000438581 Q8N9L7 120 aa5.29□□□□□ -1.56
TMEM39A-202ENST00000438581 LOC110117498A0A087WWA1 95 aa5.28□□□□□ -1.56
TMEM39A-202ENST00000438581 PRR4Q16378 134 aa5.28□□□□□ -1.56
TMEM39A-202ENST00000438581 A0A087WTM6 91 aa5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 MOBPQ13875 183 aa5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 LINC00208Q96KT6 92 aa5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 LINC01547P58512 204 aaPredicted RBP5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 C1orf64Q8NEQ6 169 aa5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 KRTAP16-1A8MUX0 517 aa5.27□□□□□ -1.57
TMEM39A-202ENST00000438581 VPS13CQ709C8 3753 aa5.26□□□□□ -1.57
TMEM39A-202ENST00000438581 C9orf163Q8N9P6 203 aa5.26□□□□□ -1.57
TMEM39A-202ENST00000438581 IGLV1-50A0A075B6I6 118 aa5.26□□□□□ -1.57
TMEM39A-202ENST00000438581 FAM229BQ4G0N7 80 aa5.26□□□□□ -1.57
TMEM39A-202ENST00000438581 LINC00528Q8N1L1 170 aa5.26□□□□□ -1.57
TMEM39A-202ENST00000438581 CELSR1Q9NYQ6 3014 aa5.25□□□□□ -1.57
TMEM39A-202ENST00000438581 KCNQ1DNQ9H478 68 aa5.25□□□□□ -1.57
TMEM39A-202ENST00000438581 LINC00476Q8WZB0 136 aa5.25□□□□□ -1.57
TMEM39A-202ENST00000438581 A0A1W2PNN7 141 aa5.24□□□□□ -1.57
TMEM39A-202ENST00000438581 Q6ZQT0 140 aa5.23□□□□□ -1.57
TMEM39A-202ENST00000438581 SPAG11AQ6PDA7 123 aa5.22□□□□□ -1.57
TMEM39A-202ENST00000438581 A0A0G2JQZ4 141 aa5.21□□□□□ -1.57
TMEM39A-202ENST00000438581 Q8NBF4 154 aa5.21□□□□□ -1.57
TMEM39A-202ENST00000438581 TLX1NBP0CAT3 122 aa5.21□□□□□ -1.58
TMEM39A-202ENST00000438581 SPACA4Q8TDM5 124 aa5.21□□□□□ -1.58
TMEM39A-202ENST00000438581 OTOGQ6ZRI0 2925 aa5.2□□□□□ -1.58
TMEM39A-202ENST00000438581 SMR3BP02814 79 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-202ENST00000438581 TENM1Q9UKZ4 2725 aa5.2□□□□□ -1.58
TMEM39A-202ENST00000438581 Q8N9P0 234 aaPredicted RBP5.19□□□□□ -1.58
TMEM39A-202ENST00000438581 ANAPC11Q9NYG5 84 aa5.19□□□□□ -1.58
TMEM39A-202ENST00000438581 LINC01558Q9Y6Z2 57 aa5.19□□□□□ -1.58
TMEM39A-202ENST00000438581 CNBPP62633 177 aaKnown RBP5.19□□□□□ -1.58
TMEM39A-202ENST00000438581 Q8N377 158 aa5.18□□□□□ -1.58
TMEM39A-202ENST00000438581 KRTAP1-5Q9BYS1 174 aa5.18□□□□□ -1.58
TMEM39A-202ENST00000438581 PDZD2O15018 2839 aa5.17□□□□□ -1.58
TMEM39A-202ENST00000438581 RPL37AP61513 92 aaKnown RBP5.17□□□□□ -1.58
TMEM39A-202ENST00000438581 FAM229AH3BQW9 127 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 PSORS1C2Q9UIG4 136 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 Q8NDZ9 215 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 PLA2G2DQ9UNK4 145 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 TYMSOSQ8TAI1 123 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 OCR1Q9BZK8 76 aa5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 FBN1P35555 2871 aaKnown RBP5.16□□□□□ -1.58
TMEM39A-202ENST00000438581 CSMD2Q7Z408 3487 aa5.15□□□□□ -1.58
TMEM39A-202ENST00000438581 H0Y9P7 68 aa5.15□□□□□ -1.58
TMEM39A-202ENST00000438581 CAMK2N1Q7Z7J9 78 aa5.15□□□□□ -1.58
TMEM39A-202ENST00000438581 SMIM29Q86T20 159 aa5.15□□□□□ -1.58
TMEM39A-202ENST00000438581 LCE6AA0A183 80 aa5.15□□□□□ -1.59
TMEM39A-202ENST00000438581 ZNF861PO60384 105 aa5.15□□□□□ -1.59
TMEM39A-202ENST00000438581 PCOTHQ58A44 107 aa5.15□□□□□ -1.59
TMEM39A-202ENST00000438581 NBPF19A0A087WUL8 3843 aa5.14□□□□□ -1.59
TMEM39A-202ENST00000438581 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.14□□□□□ -1.59
TMEM39A-202ENST00000438581 IGFL1Q6UW32 110 aa5.14□□□□□ -1.59
TMEM39A-202ENST00000438581 TENM3Q9P273 2699 aa5.14□□□□□ -1.59
TMEM39A-202ENST00000438581 VWFP04275 2813 aa5.12□□□□□ -1.59
TMEM39A-202ENST00000438581 DMAC1Q96GE9 116 aa5.12□□□□□ -1.59
TMEM39A-202ENST00000438581 UQCR11O14957 56 aa5.11□□□□□ -1.59
TMEM39A-202ENST00000438581 KRTAP26-1Q6PEX3 210 aa5.11□□□□□ -1.59
TMEM39A-202ENST00000438581 PKD1L1Q8TDX9 2849 aa5.1□□□□□ -1.59
TMEM39A-202ENST00000438581 IGLV7-43P04211 117 aa5.1□□□□□ -1.59
TMEM39A-202ENST00000438581 CUBNO60494 3623 aa5.09□□□□□ -1.59
TMEM39A-202ENST00000438581 K7EQZ3 153 aa5.09□□□□□ -1.59
TMEM39A-202ENST00000438581 ROMO1P60602 79 aa5.09□□□□□ -1.59
TMEM39A-202ENST00000438581 IGLV5-37A0A075B6J1 123 aa5.09□□□□□ -1.59
TMEM39A-202ENST00000438581 DMBT1Q9UGM3 2413 aaPredicted RBP5.09□□□□□ -1.6
TMEM39A-202ENST00000438581 LUZP6Q538Z0 58 aa5.09□□□□□ -1.6
TMEM39A-202ENST00000438581 IGKV2D-30A0A075B6S6 120 aa5.08□□□□□ -1.6
TMEM39A-202ENST00000438581 A0A1W2PNM2 257 aa5.08□□□□□ -1.6
TMEM39A-202ENST00000438581 IGKV2-30P06310 120 aa5.08□□□□□ -1.6
TMEM39A-202ENST00000438581 SPRR4Q96PI1 79 aa5.08□□□□□ -1.6
TMEM39A-202ENST00000438581 ZCCHC13Q8WW36 166 aaKnown RBP5.07□□□□□ -1.6
TMEM39A-202ENST00000438581 MIR22HGQ0VDD5 57 aa5.07□□□□□ -1.6
TMEM39A-202ENST00000438581 SSBP3-AS1Q7Z2R9 100 aa5.05□□□□□ -1.6
TMEM39A-202ENST00000438581 A8MWP4 228 aa5.04□□□□□ -1.6
TMEM39A-202ENST00000438581 SPINK1P00995 79 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms