RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 Q5VV11 94 aa4.91□□□□□ -1.62
CPSF6-202ENST00000435070 Q8N377 158 aa4.91□□□□□ -1.62
CPSF6-202ENST00000435070 C19orf73Q9NVV2 129 aa4.9□□□□□ -1.62
CPSF6-202ENST00000435070 ITPR3Q14573 2671 aa4.9□□□□□ -1.62
CPSF6-202ENST00000435070 C16orf90A8MZG2 172 aa4.9□□□□□ -1.63
CPSF6-202ENST00000435070 NOTCH2Q04721 2471 aa4.9□□□□□ -1.63
CPSF6-202ENST00000435070 A0A087WSZ3 146 aa4.89□□□□□ -1.63
CPSF6-202ENST00000435070 DSCR10P59022 87 aa4.89□□□□□ -1.63
CPSF6-202ENST00000435070 MIR22HGQ0VDD5 57 aa4.89□□□□□ -1.63
CPSF6-202ENST00000435070 ZCCHC13Q8WW36 166 aaKnown RBP4.88□□□□□ -1.63
CPSF6-202ENST00000435070 LINC00588Q9Y4M8 146 aa4.87□□□□□ -1.63
CPSF6-202ENST00000435070 IGLV1-51P01701 117 aa4.86□□□□□ -1.63
CPSF6-202ENST00000435070 SPACA4Q8TDM5 124 aa4.86□□□□□ -1.63
CPSF6-202ENST00000435070 VWFP04275 2813 aa4.86□□□□□ -1.63
CPSF6-202ENST00000435070 EGFEM1PQ0D2K5 195 aa4.86□□□□□ -1.63
CPSF6-202ENST00000435070 TEP1Q99973 2627 aaKnown RBP4.86□□□□□ -1.63
CPSF6-202ENST00000435070 RPL37AP61513 92 aaKnown RBP4.85□□□□□ -1.63
CPSF6-202ENST00000435070 Q8N9P0 234 aaPredicted RBP4.85□□□□□ -1.63
CPSF6-202ENST00000435070 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
CPSF6-202ENST00000435070 LOC101927531A0A1B0GV80 90 aa4.85□□□□□ -1.63
CPSF6-202ENST00000435070 FAM229AH3BQW9 127 aa4.85□□□□□ -1.63
CPSF6-202ENST00000435070 TP53AIP1Q9HCN2 124 aa4.85□□□□□ -1.63
CPSF6-202ENST00000435070 Q8NBF4 154 aa4.85□□□□□ -1.63
CPSF6-202ENST00000435070 LCE6AA0A183 80 aa4.84□□□□□ -1.63
CPSF6-202ENST00000435070 PKD1L1Q8TDX9 2849 aa4.84□□□□□ -1.63
CPSF6-202ENST00000435070 J3QL48 77 aa4.84□□□□□ -1.63
CPSF6-202ENST00000435070 GVQW2A0A096LPI5 108 aaPredicted RBP4.84□□□□□ -1.64
CPSF6-202ENST00000435070 IGLV5-48A0A075B6I7 105 aa4.83□□□□□ -1.64
CPSF6-202ENST00000435070 PDZD2O15018 2839 aa4.83□□□□□ -1.64
CPSF6-202ENST00000435070 HIVEP1P15822 2718 aa4.83□□□□□ -1.64
CPSF6-202ENST00000435070 CHTF8P0CG12 524 aa4.83□□□□□ -1.64
CPSF6-202ENST00000435070 IGSF10Q6WRI0 2623 aa4.83□□□□□ -1.64
CPSF6-202ENST00000435070 UBR5O95071 2799 aaPredicted RBP4.82□□□□□ -1.64
CPSF6-202ENST00000435070 H3BPC8 53 aa4.82□□□□□ -1.64
CPSF6-202ENST00000435070 PRR34Q9NV39 138 aa4.82□□□□□ -1.64
CPSF6-202ENST00000435070 FAM168BA1KXE4 195 aa4.81□□□□□ -1.64
CPSF6-202ENST00000435070 MOBPQ13875 183 aa4.81□□□□□ -1.64
CPSF6-202ENST00000435070 LINC00483Q53H64 154 aa4.81□□□□□ -1.64
CPSF6-202ENST00000435070 USP24Q9UPU5 2620 aa4.81□□□□□ -1.64
CPSF6-202ENST00000435070 COA5Q86WW8 74 aa4.8□□□□□ -1.64
CPSF6-202ENST00000435070 ATRQ13535 2644 aa4.79□□□□□ -1.64
CPSF6-202ENST00000435070 C15orf56Q8N910 161 aa4.79□□□□□ -1.64
CPSF6-202ENST00000435070 Q6ZRX8 168 aa4.79□□□□□ -1.64
CPSF6-202ENST00000435070 LINC00476Q8WZB0 136 aa4.79□□□□□ -1.64
CPSF6-202ENST00000435070 KCNQ1DNQ9H478 68 aa4.79□□□□□ -1.64
CPSF6-202ENST00000435070 ZNF469Q96JG9 3925 aaPredicted RBP4.79□□□□□ -1.64
CPSF6-202ENST00000435070 SRRM2Q9UQ35 2752 aaKnown RBP4.78□□□□□ -1.64
CPSF6-202ENST00000435070 RTL8CO15255 209 aa4.78□□□□□ -1.64
CPSF6-202ENST00000435070 TYMSOSQ8TAI1 123 aa4.78□□□□□ -1.64
CPSF6-202ENST00000435070 OTOGQ6ZRI0 2925 aa4.77□□□□□ -1.65
CPSF6-202ENST00000435070 PHF5AQ7RTV0 110 aaKnown RBP4.77□□□□□ -1.65
CPSF6-202ENST00000435070 KRTAP16-1A8MUX0 517 aa4.77□□□□□ -1.65
CPSF6-202ENST00000435070 HELZ2Q9BYK8 2649 aaKnown RBP4.77□□□□□ -1.65
CPSF6-202ENST00000435070 TNP2Q05952 138 aa4.77□□□□□ -1.65
CPSF6-202ENST00000435070 SPRR4Q96PI1 79 aa4.77□□□□□ -1.65
CPSF6-202ENST00000435070 A6NN06 94 aa4.77□□□□□ -1.65
CPSF6-202ENST00000435070 COX6B2Q6YFQ2 88 aa4.76□□□□□ -1.65
CPSF6-202ENST00000435070 Q96NJ1 140 aa4.76□□□□□ -1.65
CPSF6-202ENST00000435070 PRAC1Q96KF2 57 aa4.76□□□□□ -1.65
CPSF6-202ENST00000435070 IGFL1Q6UW32 110 aa4.75□□□□□ -1.65
CPSF6-202ENST00000435070 LINC00313P59037 77 aa4.75□□□□□ -1.65
CPSF6-202ENST00000435070 A0A0D9SG42 100 aa4.74□□□□□ -1.65
CPSF6-202ENST00000435070 Q75L30 129 aa4.74□□□□□ -1.65
CPSF6-202ENST00000435070 SPINK7P58062 85 aa4.74□□□□□ -1.65
CPSF6-202ENST00000435070 A0A1B0GW54 56 aa4.73□□□□□ -1.65
CPSF6-202ENST00000435070 KRTAP26-1Q6PEX3 210 aa4.73□□□□□ -1.65
CPSF6-202ENST00000435070 IGLV7-46A0A075B6I9 117 aa4.73□□□□□ -1.65
CPSF6-202ENST00000435070 Q8NAQ8 132 aa4.72□□□□□ -1.65
CPSF6-202ENST00000435070 SPANXA2-OT1Q8N9U9 137 aa4.72□□□□□ -1.65
CPSF6-202ENST00000435070 IGLV1-50A0A075B6I6 118 aa4.72□□□□□ -1.65
CPSF6-202ENST00000435070 TENM1Q9UKZ4 2725 aa4.71□□□□□ -1.66
CPSF6-202ENST00000435070 KRTAP4-16G5E9R7 235 aaPredicted RBP4.71□□□□□ -1.66
CPSF6-202ENST00000435070 CNBPP62633 177 aaKnown RBP4.71□□□□□ -1.66
CPSF6-202ENST00000435070 ADM2Q7Z4H4 148 aa4.71□□□□□ -1.66
CPSF6-202ENST00000435070 ITPR2Q14571 2701 aa4.7□□□□□ -1.66
CPSF6-202ENST00000435070 KRTAP29-1A8MX34 341 aaPredicted RBP4.7□□□□□ -1.66
CPSF6-202ENST00000435070 DMAC1Q96GE9 116 aa4.7□□□□□ -1.66
CPSF6-202ENST00000435070 CASC10Q5T4H9 136 aa4.7□□□□□ -1.66
CPSF6-202ENST00000435070 TENM3Q9P273 2699 aa4.7□□□□□ -1.66
CPSF6-202ENST00000435070 C9orf163Q8N9P6 203 aa4.7□□□□□ -1.66
CPSF6-202ENST00000435070 KRTAP24-1Q3LI83 254 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 NBDYA0A0U1RRE5 68 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 IGLV7-43P04211 117 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 C9orf92A6NGG3 77 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 FLNBO75369 2602 aaKnown RBP4.69□□□□□ -1.66
CPSF6-202ENST00000435070 KRTAP10-3P60369 221 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 KRTAP7-1Q8IUC3 87 aa4.69□□□□□ -1.66
CPSF6-202ENST00000435070 FBN1P35555 2871 aaKnown RBP4.68□□□□□ -1.66
CPSF6-202ENST00000435070 NOTCH1P46531 2555 aa4.68□□□□□ -1.66
CPSF6-202ENST00000435070 MAST4O15021 2626 aa4.68□□□□□ -1.66
CPSF6-202ENST00000435070 COL6A5A8TX70 2615 aa4.68□□□□□ -1.66
CPSF6-202ENST00000435070 WWC2-AS2Q96NR7 200 aa4.68□□□□□ -1.66
CPSF6-202ENST00000435070 FASNP49327 2511 aaKnown RBP4.67□□□□□ -1.66
CPSF6-202ENST00000435070 SPRR1AP35321 89 aa4.67□□□□□ -1.66
CPSF6-202ENST00000435070 PRR26Q8N8Z3 221 aa4.67□□□□□ -1.66
CPSF6-202ENST00000435070 TLX1NBP0CAT3 122 aa4.67□□□□□ -1.66
CPSF6-202ENST00000435070 PLAC4Q8WY50 150 aa4.66□□□□□ -1.66
CPSF6-202ENST00000435070 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
CPSF6-202ENST00000435070 A8MWP4 228 aa4.65□□□□□ -1.66
CPSF6-202ENST00000435070 COL7A1Q02388 2944 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms