RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 C1orf64Q8NEQ6 169 aa5.6□□□□□ -1.51
USP40-203ENST00000427112 TRAV22A0A0B4J277 110 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 KRTAP26-1Q6PEX3 210 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 LINC00588Q9Y4M8 146 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 A0A1W2PNM2 257 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 K7EQZ3 153 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 KRTAP24-1Q3LI83 254 aa5.59□□□□□ -1.51
USP40-203ENST00000427112 A0A087WSZ3 146 aa5.57□□□□□ -1.52
USP40-203ENST00000427112 KLKP1Q107X0 134 aa5.57□□□□□ -1.52
USP40-203ENST00000427112 KRTAP7-1Q8IUC3 87 aa5.56□□□□□ -1.52
USP40-203ENST00000427112 B9D2Q9BPU9 175 aa5.56□□□□□ -1.52
USP40-203ENST00000427112 CXCL6P80162 114 aa5.55□□□□□ -1.52
USP40-203ENST00000427112 GVQW2A0A096LPI5 108 aaPredicted RBP5.54□□□□□ -1.52
USP40-203ENST00000427112 UBE2DNLQ8IWF7 75 aa5.54□□□□□ -1.52
USP40-203ENST00000427112 PHF5AQ7RTV0 110 aaKnown RBP5.54□□□□□ -1.52
USP40-203ENST00000427112 Q6ZRX8 168 aa5.54□□□□□ -1.52
USP40-203ENST00000427112 KTN1-AS1Q86SY8 53 aa5.54□□□□□ -1.52
USP40-203ENST00000427112 PRAC1Q96KF2 57 aa5.54□□□□□ -1.52
USP40-203ENST00000427112 NDUFB1O75438 58 aa5.53□□□□□ -1.52
USP40-203ENST00000427112 LINC00476Q8WZB0 136 aa5.53□□□□□ -1.52
USP40-203ENST00000427112 DNAH10OSP0CZ25 163 aa5.52□□□□□ -1.53
USP40-203ENST00000427112 LINC01556Q5JQF7 62 aa5.52□□□□□ -1.53
USP40-203ENST00000427112 CASC2Q6XLA1 102 aa5.52□□□□□ -1.53
USP40-203ENST00000427112 KRTAP1-5Q9BYS1 174 aa5.52□□□□□ -1.53
USP40-203ENST00000427112 ANAPC11Q9NYG5 84 aa5.52□□□□□ -1.53
USP40-203ENST00000427112 KRTAP11-1Q8IUC1 163 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 IGLV8-61A0A075B6I0 122 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 IGLV1-50A0A075B6I6 118 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 A8MU10 97 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 IGLV9-49A0A0B4J1Y8 123 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 KCNQ1DNQ9H478 68 aa5.51□□□□□ -1.53
USP40-203ENST00000427112 ZNF706Q9Y5V0 76 aaPredicted RBP5.5□□□□□ -1.53
USP40-203ENST00000427112 H0Y9P7 68 aa5.5□□□□□ -1.53
USP40-203ENST00000427112 REG3GQ6UW15 175 aa5.5□□□□□ -1.53
USP40-203ENST00000427112 OCR1Q9BZK8 76 aa5.5□□□□□ -1.53
USP40-203ENST00000427112 EPM2AB3EWF7 344 aa5.5□□□□□ -1.53
USP40-203ENST00000427112 DSCR10P59022 87 aa5.5□□□□□ -1.53
USP40-203ENST00000427112 FBN3Q75N90 2809 aa5.49□□□□□ -1.53
USP40-203ENST00000427112 LIMD2Q9BT23 127 aa5.49□□□□□ -1.53
USP40-203ENST00000427112 IGFL1Q6UW32 110 aa5.48□□□□□ -1.53
USP40-203ENST00000427112 Q8NBF4 154 aa5.48□□□□□ -1.53
USP40-203ENST00000427112 RETNLBQ9BQ08 111 aa5.48□□□□□ -1.53
USP40-203ENST00000427112 PRR15Q8IV56 129 aa5.47□□□□□ -1.53
USP40-203ENST00000427112 SPINK6Q6UWN8 80 aa5.47□□□□□ -1.53
USP40-203ENST00000427112 DHRS4-AS1Q9P1J3 65 aa5.47□□□□□ -1.53
USP40-203ENST00000427112 PANO1I0J062 215 aa5.46□□□□□ -1.54
USP40-203ENST00000427112 K7EIL1 84 aa5.45□□□□□ -1.54
USP40-203ENST00000427112 hDV103S1A0JD37 113 aa5.45□□□□□ -1.54
USP40-203ENST00000427112 SPINK1P00995 79 aa5.44□□□□□ -1.54
USP40-203ENST00000427112 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
USP40-203ENST00000427112 IGLV5-48A0A075B6I7 105 aa5.44□□□□□ -1.54
USP40-203ENST00000427112 LCA10Q71F78 164 aa5.44□□□□□ -1.54
USP40-203ENST00000427112 DNAH9Q9NYC9 4486 aa5.43□□□□□ -1.54
USP40-203ENST00000427112 DNAH7Q8WXX0 4024 aa5.43□□□□□ -1.54
USP40-203ENST00000427112 H3BQ85 93 aa5.43□□□□□ -1.54
USP40-203ENST00000427112 KRTAP4-16G5E9R7 235 aaPredicted RBP5.42□□□□□ -1.54
USP40-203ENST00000427112 HUWE1Q7Z6Z7 4374 aaKnown RBP5.42□□□□□ -1.54
USP40-203ENST00000427112 ATP11AUNQ6ZP68 121 aa5.42□□□□□ -1.54
USP40-203ENST00000427112 C16orf90A8MZG2 172 aa5.41□□□□□ -1.54
USP40-203ENST00000427112 BCE1O60756 84 aa5.41□□□□□ -1.54
USP40-203ENST00000427112 H3BNG1 76 aa5.39□□□□□ -1.55
USP40-203ENST00000427112 COA5Q86WW8 74 aa5.39□□□□□ -1.55
USP40-203ENST00000427112 CMYA5Q8N3K9 4069 aa5.39□□□□□ -1.55
USP40-203ENST00000427112 DNHD1Q96M86 4753 aa5.39□□□□□ -1.55
USP40-203ENST00000427112 C8orf87E5RJ46 101 aa5.39□□□□□ -1.55
USP40-203ENST00000427112 TNP2Q05952 138 aa5.38□□□□□ -1.55
USP40-203ENST00000427112 IGHV6-1A0A0B4J1U7 121 aa5.38□□□□□ -1.55
USP40-203ENST00000427112 LOC101927531A0A1B0GV80 90 aa5.38□□□□□ -1.55
USP40-203ENST00000427112 SPRR1AP35321 89 aa5.36□□□□□ -1.55
USP40-203ENST00000427112 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.35□□□□□ -1.55
USP40-203ENST00000427112 MEGF8Q7Z7M0 2845 aa5.35□□□□□ -1.55
USP40-203ENST00000427112 FRAS1Q86XX4 4008 aa5.34□□□□□ -1.55
USP40-203ENST00000427112 Q1T7F1 81 aa5.34□□□□□ -1.55
USP40-203ENST00000427112 LINC01554Q52M75 96 aa5.34□□□□□ -1.55
USP40-203ENST00000427112 Q5VV11 94 aa5.34□□□□□ -1.55
USP40-203ENST00000427112 TLX1NBP0CAT3 122 aa5.34□□□□□ -1.56
USP40-203ENST00000427112 SPRR4Q96PI1 79 aa5.34□□□□□ -1.56
USP40-203ENST00000427112 A0A1B0GU69 56 aa5.33□□□□□ -1.56
USP40-203ENST00000427112 LINC00313P59037 77 aa5.33□□□□□ -1.56
USP40-203ENST00000427112 CNBPP62633 177 aaKnown RBP5.33□□□□□ -1.56
USP40-203ENST00000427112 MOBPQ13875 183 aa5.33□□□□□ -1.56
USP40-203ENST00000427112 PRR26Q8N8Z3 221 aa5.33□□□□□ -1.56
USP40-203ENST00000427112 PLECQ15149 4684 aaKnown RBP5.32□□□□□ -1.56
USP40-203ENST00000427112 A0A087X002 238 aa5.32□□□□□ -1.56
USP40-203ENST00000427112 NOTCH2NLQ7Z3S9 236 aa5.32□□□□□ -1.56
USP40-203ENST00000427112 CYP4F30PQ9H0H9 118 aa5.31□□□□□ -1.56
USP40-203ENST00000427112 ADM2Q7Z4H4 148 aa5.3□□□□□ -1.56
USP40-203ENST00000427112 Q8N9P0 234 aaPredicted RBP5.3□□□□□ -1.56
USP40-203ENST00000427112 CIRBP-AS1Q8TBR5 109 aa5.3□□□□□ -1.56
USP40-203ENST00000427112 CRIPTQ9P021 101 aa5.3□□□□□ -1.56
USP40-203ENST00000427112 SPINK7P58062 85 aa5.29□□□□□ -1.56
USP40-203ENST00000427112 SPINT4Q6UDR6 99 aa5.28□□□□□ -1.56
USP40-203ENST00000427112 CDC42SE1Q9NRR8 79 aa5.28□□□□□ -1.56
USP40-203ENST00000427112 SSBP3-AS1Q7Z2R9 100 aa5.28□□□□□ -1.56
USP40-203ENST00000427112 PLA2G2DQ9UNK4 145 aa5.28□□□□□ -1.56
USP40-203ENST00000427112 IGLV5-37A0A075B6J1 123 aa5.27□□□□□ -1.57
USP40-203ENST00000427112 KMT2AQ03164 3969 aa5.27□□□□□ -1.57
USP40-203ENST00000427112 ZCCHC13Q8WW36 166 aaKnown RBP5.26□□□□□ -1.57
USP40-203ENST00000427112 CSAG1Q6PB30 78 aa5.26□□□□□ -1.57
USP40-203ENST00000427112 APLNQ9ULZ1 77 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms