RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 IFITM1P13164 125 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 FAM19A1Q7Z5A9 133 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP13-1Q8IUC0 172 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 ATOH7Q8N100 152 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 DAND5Q8N907 189 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 LINC00308Q8TCZ7 52 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 COPS9Q8WXC6 57 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 SPANXB1Q9NS25 103 aaPredicted RBP1.46□□□□□ -2.17
VPS13A-208ENST00000423463 CBY1Q9Y3M2 126 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 ABCA13Q86UQ4 5058 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 NCR3O14931 201 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 DDTP30046 118 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SPRR1AP35321 89 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 S100A7L2Q5SY68 101 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SOSTDC1Q6X4U4 206 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SCGB1D4Q6XE38 83 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 LINC00337Q8N6G1 96 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SPANXDQ9BXN6 97 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 TTTY13Q9BZ97 58 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SPANXCQ9NY87 97 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 SRRM2Q9UQ35 2752 aaKnown RBP1.46□□□□□ -2.18
VPS13A-208ENST00000423463 TRBV10-3A0A0K0K1G6 114 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 LOC105371267A0A1B0GV96 52 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 ETDCA0A1B0GVM5 59 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 IGLV6-57P01721 117 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 PCP2Q8IVA1 136 aa1.46□□□□□ -2.18
VPS13A-208ENST00000423463 VPS13BQ7Z7G8 4022 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 CRYGAP11844 174 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 HINT1P49773 126 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-208ENST00000423463 NPC2P61916 151 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 PRLHP81277 87 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 JOSD1Q15040 202 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-208ENST00000423463 FAM229BQ4G0N7 80 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 DLEU1O43261 78 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 KRTAP5-8O75690 187 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 PYY3Q5JQD4 70 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 KRTAP5-10Q6L8G5 202 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 MUSTN1Q8IVN3 82 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 OR13C6PQ8NH95 151 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 SMCR5Q8TEV8 140 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 HIGD2AQ9BW72 106 aa1.45□□□□□ -2.18
VPS13A-208ENST00000423463 ZNF706Q9Y5V0 76 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-208ENST00000423463 DMBT1Q9UGM3 2413 aaPredicted RBP1.44□□□□□ -2.18
VPS13A-208ENST00000423463 FAT1Q14517 4588 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 TRAV23DV6A0A075B6W5 121 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 ZNF73O43830 326 aaPredicted RBP1.44□□□□□ -2.18
VPS13A-208ENST00000423463 COX8AP10176 69 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 MDN1Q9NU22 5596 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 TRAV13-2A0A0B4J235 113 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 TRBV7-6A0A0J9YX20 115 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 CTAG1AP78358 180 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 Q6ZRX8 168 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 SPRR4Q96PI1 79 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 VAMP8Q9BV40 100 aa1.44□□□□□ -2.18
VPS13A-208ENST00000423463 A6NDN8 102 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 SMIM6P0DI80 62 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 COX7BP24311 80 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 SPATA45Q537H7 98 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 SLC25A34Q6PIV7 304 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 HIGD1BQ9P298 99 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 ERC2-IT1O76042 136 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 VAMP3Q15836 100 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 TAL2Q16559 108 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 C6orf99Q4VX62 202 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 KRTAP13-2Q52LG2 175 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 LINC00483Q53H64 154 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 KRTAP5-5Q701N2 237 aaPredicted RBP1.43□□□□□ -2.18
VPS13A-208ENST00000423463 CAMK2N1Q7Z7J9 78 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 C14orf144Q96I85 54 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 Q9BRP9 147 aa1.43□□□□□ -2.18
VPS13A-208ENST00000423463 ELOF1P60002 83 aaKnown RBP1.42□□□□□ -2.18
VPS13A-208ENST00000423463 SPAG11AQ6PDA7 123 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 SSBP3-AS1Q7Z2R9 100 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 C12orf57Q99622 126 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 PRO1933Q9H354 126 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 SPRR1BP22528 89 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 C3orf22Q8N5N4 141 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 LINC00304Q8N9R0 145 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 SMIM11BQ8TCY0 68 aa1.42□□□□□ -2.18
VPS13A-208ENST00000423463 NHP2Q9NX24 153 aaKnown RBP1.42□□□□□ -2.18
VPS13A-208ENST00000423463 SLC25A20O43772 301 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 C2orf91Q6ZV80 131 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 PKHD1L1Q86WI1 4243 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 A0A0B4J2C4 111 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 TEX49A0A1B0GTD5 131 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 TSPAN13O95857 204 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 ST20-AS1Q8NBB2 130 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 RAB37Q96AX2 223 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 LAMTOR3Q9UHA4 124 aa1.41□□□□□ -2.18
VPS13A-208ENST00000423463 IGLV5-48A0A075B6I7 105 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 TSTD3H0UI37 97 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 H0YGX0 51 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 SNCGO76070 127 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 SPINK1P00995 79 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 RPS29P62273 56 aaKnown RBP1.4□□□□□ -2.18
VPS13A-208ENST00000423463 HSD52Q0P140 79 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 BVES-AS1Q5T3Y7 98 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 LINC00575Q6W349 94 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 LCE3DQ9BYE3 92 aa1.4□□□□□ -2.18
VPS13A-208ENST00000423463 KRTAP4-3Q9BYR4 195 aa1.4□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms