RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 Q8IZM0 81 aa4.34□□□□□ -1.71
TM9SF4-202ENST00000398022 Q8NAQ8 132 aa4.34□□□□□ -1.71
TM9SF4-202ENST00000398022 Q9BRP9 147 aa4.34□□□□□ -1.71
TM9SF4-202ENST00000398022 RTL8CO15255 209 aa4.34□□□□□ -1.72
TM9SF4-202ENST00000398022 HIGD2BQ4VC39 106 aa4.34□□□□□ -1.72
TM9SF4-202ENST00000398022 CSAG1Q6PB30 78 aa4.34□□□□□ -1.72
TM9SF4-202ENST00000398022 IGLV5-52A0A0A0MRZ9 124 aa4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 NDUFB1O75438 58 aa4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 KRTAP4-16G5E9R7 235 aaPredicted RBP4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 PDE6GP18545 87 aa4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC01547P58512 204 aaPredicted RBP4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 HIGD2AQ9BW72 106 aa4.33□□□□□ -1.72
TM9SF4-202ENST00000398022 A0A1B0GUV1 79 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 PRR4Q16378 134 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 GIG44P09565 113 aaPredicted RBP4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 COX17Q14061 63 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 OCR1Q9BZK8 76 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 WFDC10AQ9H1F0 79 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 BIRC6Q9NR09 4857 aa4.32□□□□□ -1.72
TM9SF4-202ENST00000398022 PRO0255Q9UI72 69 aa4.31□□□□□ -1.72
TM9SF4-202ENST00000398022 CLPSL2Q6UWE3 100 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC00208Q96KT6 92 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 KMT2AQ03164 3969 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 CASC10Q5T4H9 136 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC01006Q8NI28 216 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 A0A1W2PNM2 257 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 PRB2P02812 416 aaPredicted RBP4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 MUC7Q8TAX7 377 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 PCLOQ9Y6V0 5065 aa4.3□□□□□ -1.72
TM9SF4-202ENST00000398022 H3BQ85 93 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 SPAG11BQ08648 103 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 SPAG11AQ6PDA7 123 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 DHRS4-AS1Q9P1J3 65 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 LCE6AA0A183 80 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 ANGP03950 147 aaKnown RBP4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 C9orf129Q5T035 196 aaKnown RBP4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 Q6ZR54 194 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC00167Q96N53 147 aa4.29□□□□□ -1.72
TM9SF4-202ENST00000398022 A0A096LPF7 62 aa4.28□□□□□ -1.72
TM9SF4-202ENST00000398022 DNAH6Q9C0G6 4158 aa4.28□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC00612Q8N6U2 182 aa4.28□□□□□ -1.72
TM9SF4-202ENST00000398022 LINC01558Q9Y6Z2 57 aa4.28□□□□□ -1.72
TM9SF4-202ENST00000398022 PLECQ15149 4684 aaKnown RBP4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 ZCCHC13Q8WW36 166 aaKnown RBP4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 FAT2Q9NYQ8 4349 aa4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 IGLV5-37A0A075B6J1 123 aa4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 IGLV10-54A0A075B6I4 117 aa4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 P0C880 135 aa4.27□□□□□ -1.73
TM9SF4-202ENST00000398022 LINC00575Q6W349 94 aa4.26□□□□□ -1.73
TM9SF4-202ENST00000398022 VPS13DQ5THJ4 4388 aa4.25□□□□□ -1.73
TM9SF4-202ENST00000398022 C20orf166-AS1Q96NR2 134 aa4.25□□□□□ -1.73
TM9SF4-202ENST00000398022 C7orf33Q8WU49 177 aa4.25□□□□□ -1.73
TM9SF4-202ENST00000398022 SPANXA2-OT1Q8N9U9 137 aa4.25□□□□□ -1.73
TM9SF4-202ENST00000398022 ALMS1Q8TCU4 4167 aa4.25□□□□□ -1.73
TM9SF4-202ENST00000398022 IGLV8-61A0A075B6I0 122 aa4.24□□□□□ -1.73
TM9SF4-202ENST00000398022 PLAC8Q9NZF1 115 aa4.24□□□□□ -1.73
TM9SF4-202ENST00000398022 LOC110117498A0A087WWA1 95 aa4.24□□□□□ -1.73
TM9SF4-202ENST00000398022 DNAH2Q9P225 4427 aa4.23□□□□□ -1.73
TM9SF4-202ENST00000398022 DNAH10OSP0CZ25 163 aa4.23□□□□□ -1.73
TM9SF4-202ENST00000398022 CNBPP62633 177 aaKnown RBP4.23□□□□□ -1.73
TM9SF4-202ENST00000398022 LELP1Q5T871 98 aa4.23□□□□□ -1.73
TM9SF4-202ENST00000398022 PKD1P98161 4303 aa4.23□□□□□ -1.73
TM9SF4-202ENST00000398022 HERC2O95714 4834 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 IGLV1-50A0A075B6I6 118 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 A0A087WSZ3 146 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 HTN3P15516 51 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 SPINK7P58062 85 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 DEFB135Q30KP9 77 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 LINC00483Q53H64 154 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 UNQ6190/PRO20217Q6UXQ8 127 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 Q6ZQY7 126 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 SMIM29Q86T20 159 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 A0A0J9YWU9 116 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 SPART-AS1P0CW21 52 aa4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 KPRPQ5T749 579 aaPredicted RBP4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.22□□□□□ -1.73
TM9SF4-202ENST00000398022 KRTAP10-3P60369 221 aa4.21□□□□□ -1.73
TM9SF4-202ENST00000398022 KLK12Q9UKR0 248 aa4.21□□□□□ -1.73
TM9SF4-202ENST00000398022 IGLV6-57P01721 117 aa4.21□□□□□ -1.74
TM9SF4-202ENST00000398022 COX7BP24311 80 aa4.21□□□□□ -1.74
TM9SF4-202ENST00000398022 CIRBP-AS1Q8TBR5 109 aa4.21□□□□□ -1.74
TM9SF4-202ENST00000398022 DEFB4AO15263 64 aa4.21□□□□□ -1.74
TM9SF4-202ENST00000398022 GVQW2A0A096LPI5 108 aaPredicted RBP4.2□□□□□ -1.74
TM9SF4-202ENST00000398022 PKHD1P08F94 4074 aa4.2□□□□□ -1.74
TM9SF4-202ENST00000398022 C10orf25Q5T742 122 aa4.2□□□□□ -1.74
TM9SF4-202ENST00000398022 NBEAL2Q6ZNJ1 2754 aa4.19□□□□□ -1.74
TM9SF4-202ENST00000398022 H0Y9P7 68 aa4.19□□□□□ -1.74
TM9SF4-202ENST00000398022 DNAH10Q8IVF4 4471 aa4.19□□□□□ -1.74
TM9SF4-202ENST00000398022 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
TM9SF4-202ENST00000398022 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
TM9SF4-202ENST00000398022 PRR34Q9NV39 138 aa4.18□□□□□ -1.74
TM9SF4-202ENST00000398022 KRTAP25-1Q3LHN0 102 aa4.18□□□□□ -1.74
TM9SF4-202ENST00000398022 A0A1B0GVX0 72 aa4.17□□□□□ -1.74
TM9SF4-202ENST00000398022 Q8N9L7 120 aa4.17□□□□□ -1.74
TM9SF4-202ENST00000398022 C6orf48Q9UBA6 75 aa4.17□□□□□ -1.74
TM9SF4-202ENST00000398022 H3BPC8 53 aa4.17□□□□□ -1.74
TM9SF4-202ENST00000398022 TLX1NBP0CAT3 122 aa4.16□□□□□ -1.74
TM9SF4-202ENST00000398022 ETDCA0A1B0GVM5 59 aa4.15□□□□□ -1.74
TM9SF4-202ENST00000398022 IGKV4-1P06312 121 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms