RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 TRBV7-4A0A0J9YYF1 115 aa12.31□□□□□ -0.44
HDDC3-202ENST00000394272 DSCR8Q96T75 97 aa12.31□□□□□ -0.44
HDDC3-202ENST00000394272 SPRR4Q96PI1 79 aa12.3□□□□□ -0.44
HDDC3-202ENST00000394272 FAT1Q14517 4588 aa12.3□□□□□ -0.44
HDDC3-202ENST00000394272 FAM240AA0A1B0GVK7 77 aa12.29□□□□□ -0.44
HDDC3-202ENST00000394272 Q6ZQT0 140 aa12.29□□□□□ -0.44
HDDC3-202ENST00000394272 CCKP06307 115 aa12.28□□□□□ -0.44
HDDC3-202ENST00000394272 PDE6GP18545 87 aa12.27□□□□□ -0.45
HDDC3-202ENST00000394272 LINC00483Q53H64 154 aa12.27□□□□□ -0.45
HDDC3-202ENST00000394272 ZNF706Q9Y5V0 76 aaPredicted RBP12.27□□□□□ -0.45
HDDC3-202ENST00000394272 ACYP1P07311 99 aa12.23□□□□□ -0.45
HDDC3-202ENST00000394272 C21orf62-AS1Q17RA5 79 aa12.23□□□□□ -0.45
HDDC3-202ENST00000394272 IGLV8-61A0A075B6I0 122 aa12.23□□□□□ -0.45
HDDC3-202ENST00000394272 F8WEM9 126 aa12.23□□□□□ -0.45
HDDC3-202ENST00000394272 SIGMAR1Q99720 223 aa12.23□□□□□ -0.45
HDDC3-202ENST00000394272 CDIP1Q9H305 208 aa12.22□□□□□ -0.45
HDDC3-202ENST00000394272 SMR3BP02814 79 aaPredicted RBP12.21□□□□□ -0.46
HDDC3-202ENST00000394272 RPL37AP61513 92 aaKnown RBP12.2□□□□□ -0.46
HDDC3-202ENST00000394272 HSPG2P98160 4391 aa12.18□□□□□ -0.46
HDDC3-202ENST00000394272 ANAPC11Q9NYG5 84 aa12.16□□□□□ -0.46
HDDC3-202ENST00000394272 IGFL1Q6UW32 110 aa12.15□□□□□ -0.46
HDDC3-202ENST00000394272 LINC00846Q9NV44 126 aa12.15□□□□□ -0.46
HDDC3-202ENST00000394272 A0A1W2PNM2 257 aa12.14□□□□□ -0.47
HDDC3-202ENST00000394272 EPPK1P58107 5090 aaKnown RBP12.14□□□□□ -0.47
HDDC3-202ENST00000394272 KRTAP10-4P60372 401 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-202ENST00000394272 Q6JHZ5 121 aa12.12□□□□□ -0.47
HDDC3-202ENST00000394272 Q8NBF4 154 aa12.12□□□□□ -0.47
HDDC3-202ENST00000394272 RYR1P21817 5038 aa12.12□□□□□ -0.47
HDDC3-202ENST00000394272 A0A0G2JQZ4 141 aa12.12□□□□□ -0.47
HDDC3-202ENST00000394272 CDK2AP2O75956 126 aa12.12□□□□□ -0.47
HDDC3-202ENST00000394272 IGLV9-49A0A0B4J1Y8 123 aa12.11□□□□□ -0.47
HDDC3-202ENST00000394272 SCGB1A1P11684 91 aa12.1□□□□□ -0.47
HDDC3-202ENST00000394272 C9orf153Q5TBE3 101 aa12.08□□□□□ -0.48
HDDC3-202ENST00000394272 SPINK6Q6UWN8 80 aa12.08□□□□□ -0.48
HDDC3-202ENST00000394272 KRTAP1-4P0C5Y4 121 aa12.08□□□□□ -0.48
HDDC3-202ENST00000394272 MT-ATP8P03928 68 aa12.07□□□□□ -0.48
HDDC3-202ENST00000394272 A0A1B0GW54 56 aa12.06□□□□□ -0.48
HDDC3-202ENST00000394272 CRYGAP11844 174 aa12.06□□□□□ -0.48
HDDC3-202ENST00000394272 MOBPQ13875 183 aa12.06□□□□□ -0.48
HDDC3-202ENST00000394272 FAM229BQ4G0N7 80 aa12.04□□□□□ -0.48
HDDC3-202ENST00000394272 LINC00643Q86TS7 51 aa12.03□□□□□ -0.48
HDDC3-202ENST00000394272 A0A087X002 238 aa12.02□□□□□ -0.48
HDDC3-202ENST00000394272 Q6Q795 121 aa12.02□□□□□ -0.48
HDDC3-202ENST00000394272 UBL5Q9BZL1 73 aa12.02□□□□□ -0.48
HDDC3-202ENST00000394272 PKHD1L1Q86WI1 4243 aa12.02□□□□□ -0.49
HDDC3-202ENST00000394272 KIAA1109Q2LD37 5005 aa12.01□□□□□ -0.49
HDDC3-202ENST00000394272 Q6ZVQ6 151 aa12□□□□□ -0.49
HDDC3-202ENST00000394272 FAM229AH3BQW9 127 aa11.98□□□□□ -0.49
HDDC3-202ENST00000394272 KRTAP13-2Q52LG2 175 aa11.98□□□□□ -0.49
HDDC3-202ENST00000394272 PLA2G1BP04054 148 aaKnown RBP11.97□□□□□ -0.49
HDDC3-202ENST00000394272 SSBP3-AS1Q7Z2R9 100 aa11.96□□□□□ -0.49
HDDC3-202ENST00000394272 TRBV7-7A0A0K0K1E9 115 aa11.95□□□□□ -0.5
HDDC3-202ENST00000394272 A0A087WSZ3 146 aa11.95□□□□□ -0.5
HDDC3-202ENST00000394272 Q5VSD8 79 aa11.93□□□□□ -0.5
HDDC3-202ENST00000394272 NREPQ16612 68 aa11.93□□□□□ -0.5
HDDC3-202ENST00000394272 KRTAP17-1Q9BYP8 105 aa11.91□□□□□ -0.5
HDDC3-202ENST00000394272 ATP5EP2Q5VTU8 51 aa11.9□□□□□ -0.5
HDDC3-202ENST00000394272 IGKV3D-7A0A0C4DH55 119 aa11.89□□□□□ -0.51
HDDC3-202ENST00000394272 HRCT1Q6UXD1 115 aa11.89□□□□□ -0.51
HDDC3-202ENST00000394272 CD164Q04900 197 aa11.87□□□□□ -0.51
HDDC3-202ENST00000394272 CXCL6P80162 114 aa11.85□□□□□ -0.51
HDDC3-202ENST00000394272 PRR26Q8N8Z3 221 aa11.84□□□□□ -0.51
HDDC3-202ENST00000394272 IMUPQ9GZP8 106 aa11.84□□□□□ -0.51
HDDC3-202ENST00000394272 Q8N1X5 172 aa11.83□□□□□ -0.52
HDDC3-202ENST00000394272 TYMSOSQ8TAI1 123 aa11.83□□□□□ -0.52
HDDC3-202ENST00000394272 BPY2O14599 106 aa11.81□□□□□ -0.52
HDDC3-202ENST00000394272 SS18L2Q9UHA2 77 aa11.8□□□□□ -0.52
HDDC3-202ENST00000394272 LINC00472Q9H8W2 130 aa11.79□□□□□ -0.52
HDDC3-202ENST00000394272 LRP1Q07954 4544 aaKnown RBP11.79□□□□□ -0.52
HDDC3-202ENST00000394272 FAT3Q8TDW7 4589 aa11.76□□□□□ -0.53
HDDC3-202ENST00000394272 DEFB116Q30KQ4 102 aa11.75□□□□□ -0.53
HDDC3-202ENST00000394272 Q96NJ1 140 aa11.75□□□□□ -0.53
HDDC3-202ENST00000394272 DSCR10P59022 87 aa11.74□□□□□ -0.53
HDDC3-202ENST00000394272 TNXBP22105 4242 aa11.74□□□□□ -0.53
HDDC3-202ENST00000394272 HIST1H4AP62805 103 aaKnown RBP11.74□□□□□ -0.53
HDDC3-202ENST00000394272 BIRC6Q9NR09 4857 aa11.73□□□□□ -0.53
HDDC3-202ENST00000394272 Q5XG85 94 aa11.72□□□□□ -0.53
HDDC3-202ENST00000394272 A0A087WVE0 104 aa11.72□□□□□ -0.53
HDDC3-202ENST00000394272 Q8N9L7 120 aa11.72□□□□□ -0.53
HDDC3-202ENST00000394272 ANAPC13Q9BS18 74 aa11.72□□□□□ -0.53
HDDC3-202ENST00000394272 ASB16-AS1Q495Z4 193 aa11.7□□□□□ -0.54
HDDC3-202ENST00000394272 LINC00304Q8N9R0 145 aa11.7□□□□□ -0.54
HDDC3-202ENST00000394272 C4orf48Q5BLP8 95 aa11.7□□□□□ -0.54
HDDC3-202ENST00000394272 SPINK1P00995 79 aa11.69□□□□□ -0.54
HDDC3-202ENST00000394272 IGKV4-1P06312 121 aa11.69□□□□□ -0.54
HDDC3-202ENST00000394272 J3KT08 172 aa11.68□□□□□ -0.54
HDDC3-202ENST00000394272 SPAG11AQ6PDA7 123 aa11.67□□□□□ -0.54
HDDC3-202ENST00000394272 K7EQZ3 153 aa11.66□□□□□ -0.54
HDDC3-202ENST00000394272 FLG2Q5D862 2391 aaPredicted RBP11.66□□□□□ -0.54
HDDC3-202ENST00000394272 LIMD2Q9BT23 127 aa11.66□□□□□ -0.54
HDDC3-202ENST00000394272 RPS29P62273 56 aaKnown RBP11.64□□□□□ -0.55
HDDC3-202ENST00000394272 MYCBP2O75592 4640 aa11.64□□□□□ -0.55
HDDC3-202ENST00000394272 FAM236AA0A1B0GUQ0 79 aa11.63□□□□□ -0.55
HDDC3-202ENST00000394272 FAM236BA0A1B0GV22 79 aa11.63□□□□□ -0.55
HDDC3-202ENST00000394272 A8MWP4 228 aa11.63□□□□□ -0.55
HDDC3-202ENST00000394272 KRTAP10-8P60410 259 aa11.63□□□□□ -0.55
HDDC3-202ENST00000394272 PRR15Q8IV56 129 aa11.59□□□□□ -0.55
HDDC3-202ENST00000394272 C1orf195Q5TG92 126 aa11.59□□□□□ -0.55
HDDC3-202ENST00000394272 KRTAP4-5Q9BYR2 181 aa11.59□□□□□ -0.55
HDDC3-202ENST00000394272 HERC2O95714 4834 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms