RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 A0A1W2PNM2 257 aa7.18□□□□□ -1.26
CUX1-204ENST00000393824 PSCAO43653 123 aa7.18□□□□□ -1.26
CUX1-204ENST00000393824 UBE2AP49459 152 aa7.18□□□□□ -1.26
CUX1-204ENST00000393824 Q5VV11 94 aa7.18□□□□□ -1.26
CUX1-204ENST00000393824 DSCR10P59022 87 aa7.17□□□□□ -1.26
CUX1-204ENST00000393824 KRTAP26-1Q6PEX3 210 aa7.17□□□□□ -1.26
CUX1-204ENST00000393824 PHF5AQ7RTV0 110 aaKnown RBP7.17□□□□□ -1.26
CUX1-204ENST00000393824 NDUFB1O75438 58 aa7.17□□□□□ -1.26
CUX1-204ENST00000393824 KCNQ1DNQ9H478 68 aa7.17□□□□□ -1.26
CUX1-204ENST00000393824 APLNQ9ULZ1 77 aa7.17□□□□□ -1.26
CUX1-204ENST00000393824 C16orf90A8MZG2 172 aa7.16□□□□□ -1.26
CUX1-204ENST00000393824 TNP2Q05952 138 aa7.16□□□□□ -1.26
CUX1-204ENST00000393824 SPRR4Q96PI1 79 aa7.16□□□□□ -1.26
CUX1-204ENST00000393824 Q8NBF4 154 aa7.16□□□□□ -1.26
CUX1-204ENST00000393824 ATP11AUNQ6ZP68 121 aa7.15□□□□□ -1.26
CUX1-204ENST00000393824 DEFB105AQ8NG35 78 aa7.15□□□□□ -1.26
CUX1-204ENST00000393824 DNAH2Q9P225 4427 aa7.14□□□□□ -1.27
CUX1-204ENST00000393824 K7EQZ3 153 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 C1orf137Q5JT78 98 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 C15orf56Q8N910 161 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 ST20-AS1Q8NBB2 130 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 SPTSSBQ8NFR3 76 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 HYDINQ4G0P3 5121 aa7.13□□□□□ -1.27
CUX1-204ENST00000393824 A6NN06 94 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 CHKB-CPT1BH3BT56 60 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 DHRS4-AS1Q9P1J3 65 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 HCG22E2RYF7 251 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 KRTAP1-5Q9BYS1 174 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 PLA2G2DQ9UNK4 145 aa7.12□□□□□ -1.27
CUX1-204ENST00000393824 NUPR2A6NF83 97 aa7.11□□□□□ -1.27
CUX1-204ENST00000393824 C8orf87E5RJ46 101 aa7.11□□□□□ -1.27
CUX1-204ENST00000393824 PRR4Q16378 134 aa7.11□□□□□ -1.27
CUX1-204ENST00000393824 NKAPP1Q8N9T2 125 aa7.1□□□□□ -1.27
CUX1-204ENST00000393824 Q6ZRX8 168 aa7.1□□□□□ -1.27
CUX1-204ENST00000393824 LIMD2Q9BT23 127 aa7.1□□□□□ -1.27
CUX1-204ENST00000393824 KRTAP4-16G5E9R7 235 aaPredicted RBP7.09□□□□□ -1.27
CUX1-204ENST00000393824 TLX1NBP0CAT3 122 aa7.09□□□□□ -1.28
CUX1-204ENST00000393824 SPANXA2-OT1Q8N9U9 137 aa7.09□□□□□ -1.28
CUX1-204ENST00000393824 C7orf33Q8WU49 177 aa7.09□□□□□ -1.28
CUX1-204ENST00000393824 WWC2-AS2Q96NR7 200 aa7.09□□□□□ -1.28
CUX1-204ENST00000393824 KMT2CQ8NEZ4 4911 aaKnown RBP7.08□□□□□ -1.28
CUX1-204ENST00000393824 DNAH10OSP0CZ25 163 aa7.08□□□□□ -1.28
CUX1-204ENST00000393824 LINC01556Q5JQF7 62 aa7.08□□□□□ -1.28
CUX1-204ENST00000393824 C7orf65Q6ZTY9 151 aa7.08□□□□□ -1.28
CUX1-204ENST00000393824 Q9BRP9 147 aa7.08□□□□□ -1.28
CUX1-204ENST00000393824 IGLV5-37A0A075B6J1 123 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 MP68P56378 58 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 CASC10Q5T4H9 136 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 LCA10Q71F78 164 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
CUX1-204ENST00000393824 SACSQ9NZJ4 4579 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 H3BS24 57 aa7.07□□□□□ -1.28
CUX1-204ENST00000393824 SPRR1AP35321 89 aa7.06□□□□□ -1.28
CUX1-204ENST00000393824 SERTAD4-AS1Q5TG53 156 aa7.06□□□□□ -1.28
CUX1-204ENST00000393824 UBE2DNLQ8IWF7 75 aa7.05□□□□□ -1.28
CUX1-204ENST00000393824 H3BPC8 53 aa7.04□□□□□ -1.28
CUX1-204ENST00000393824 LINC00208Q96KT6 92 aa7.04□□□□□ -1.28
CUX1-204ENST00000393824 PRR15LQ9BU68 103 aa7.04□□□□□ -1.28
CUX1-204ENST00000393824 Q75L30 129 aa7.04□□□□□ -1.28
CUX1-204ENST00000393824 IGLV1-50A0A075B6I6 118 aa7.03□□□□□ -1.28
CUX1-204ENST00000393824 FRAS1Q86XX4 4008 aa7.03□□□□□ -1.28
CUX1-204ENST00000393824 IGKV2D-24A0A075B6R9 120 aa7.02□□□□□ -1.29
CUX1-204ENST00000393824 A6NED7 52 aa7.01□□□□□ -1.29
CUX1-204ENST00000393824 KRTAP29-1A8MX34 341 aaPredicted RBP7.01□□□□□ -1.29
CUX1-204ENST00000393824 ALMS1Q8TCU4 4167 aa7.01□□□□□ -1.29
CUX1-204ENST00000393824 CDC42SE1Q9NRR8 79 aa7.01□□□□□ -1.29
CUX1-204ENST00000393824 LOC101927531A0A1B0GV80 90 aa7□□□□□ -1.29
CUX1-204ENST00000393824 RPL37AP8A6NKH3 93 aa7□□□□□ -1.29
CUX1-204ENST00000393824 WFDC13Q8IUB5 93 aa7□□□□□ -1.29
CUX1-204ENST00000393824 LINC00476Q8WZB0 136 aa6.99□□□□□ -1.29
CUX1-204ENST00000393824 LY6G6CO95867 125 aa6.99□□□□□ -1.29
CUX1-204ENST00000393824 NBDYA0A0U1RRE5 68 aa6.98□□□□□ -1.29
CUX1-204ENST00000393824 H0Y9P7 68 aa6.98□□□□□ -1.29
CUX1-204ENST00000393824 DEFB116Q30KQ4 102 aa6.98□□□□□ -1.29
CUX1-204ENST00000393824 C9orf163Q8N9P6 203 aa6.98□□□□□ -1.29
CUX1-204ENST00000393824 FAT2Q9NYQ8 4349 aa6.97□□□□□ -1.29
CUX1-204ENST00000393824 DNAH17Q9UFH2 4485 aa6.97□□□□□ -1.29
CUX1-204ENST00000393824 IGFL1Q6UW32 110 aa6.96□□□□□ -1.29
CUX1-204ENST00000393824 DNAH6Q9C0G6 4158 aa6.96□□□□□ -1.3
CUX1-204ENST00000393824 MOBPQ13875 183 aa6.96□□□□□ -1.3
CUX1-204ENST00000393824 IGLV8-61A0A075B6I0 122 aa6.95□□□□□ -1.3
CUX1-204ENST00000393824 KRTAP7-1Q8IUC3 87 aa6.95□□□□□ -1.3
CUX1-204ENST00000393824 FAM168BA1KXE4 195 aa6.94□□□□□ -1.3
CUX1-204ENST00000393824 Q6ZRN7 208 aaPredicted RBP6.94□□□□□ -1.3
CUX1-204ENST00000393824 HECTD4Q9Y4D8 3996 aa6.94□□□□□ -1.3
CUX1-204ENST00000393824 Q6ZR54 194 aa6.94□□□□□ -1.3
CUX1-204ENST00000393824 A0A087WSZ3 146 aa6.93□□□□□ -1.3
CUX1-204ENST00000393824 CASC2Q6XLA1 102 aa6.93□□□□□ -1.3
CUX1-204ENST00000393824 RYR2Q92736 4967 aa6.93□□□□□ -1.3
CUX1-204ENST00000393824 IGLV7-46A0A075B6I9 117 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 A0A0G2JQZ4 141 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 A0A1W2PNN7 141 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 REG3GQ6UW15 175 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 COA5Q86WW8 74 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 DNAH11Q96DT5 4516 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 RYR3Q15413 4870 aa6.92□□□□□ -1.3
CUX1-204ENST00000393824 RPL37AP61513 92 aaKnown RBP6.91□□□□□ -1.3
CUX1-204ENST00000393824 CNBPP62633 177 aaKnown RBP6.9□□□□□ -1.3
CUX1-204ENST00000393824 PKHD1P08F94 4074 aa6.9□□□□□ -1.3
CUX1-204ENST00000393824 A8MWP4 228 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms