RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 H0Y9J4 135 aa6.62□□□□□ -1.35
COL6A3-205ENST00000392004 NREPQ16612 68 aa6.62□□□□□ -1.35
COL6A3-205ENST00000392004 ST20-AS1Q8NBB2 130 aa6.62□□□□□ -1.35
COL6A3-205ENST00000392004 RPL37AP61513 92 aaKnown RBP6.62□□□□□ -1.35
COL6A3-205ENST00000392004 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.61□□□□□ -1.35
COL6A3-205ENST00000392004 EPM2AB3EWF7 344 aa6.61□□□□□ -1.35
COL6A3-205ENST00000392004 BPY2O14599 106 aa6.6□□□□□ -1.35
COL6A3-205ENST00000392004 J3QL48 77 aa6.6□□□□□ -1.35
COL6A3-205ENST00000392004 DEFB116Q30KQ4 102 aa6.6□□□□□ -1.35
COL6A3-205ENST00000392004 DHRS4-AS1Q9P1J3 65 aa6.6□□□□□ -1.35
COL6A3-205ENST00000392004 TMEM254Q8TBM7 123 aa6.59□□□□□ -1.35
COL6A3-205ENST00000392004 Q9BRP9 147 aa6.59□□□□□ -1.35
COL6A3-205ENST00000392004 LINC00528Q8N1L1 170 aa6.59□□□□□ -1.36
COL6A3-205ENST00000392004 IGLV6-57P01721 117 aa6.58□□□□□ -1.36
COL6A3-205ENST00000392004 PLA2G1BP04054 148 aaKnown RBP6.58□□□□□ -1.36
COL6A3-205ENST00000392004 MOBPQ13875 183 aa6.58□□□□□ -1.36
COL6A3-205ENST00000392004 A0A0G2JQZ4 141 aa6.58□□□□□ -1.36
COL6A3-205ENST00000392004 Q8NDZ9 215 aa6.58□□□□□ -1.36
COL6A3-205ENST00000392004 PSORS1C2Q9UIG4 136 aa6.58□□□□□ -1.36
COL6A3-205ENST00000392004 KRTAP10-1P60331 282 aa6.57□□□□□ -1.36
COL6A3-205ENST00000392004 FAM30AQ9NZY2 134 aa6.57□□□□□ -1.36
COL6A3-205ENST00000392004 SPACA4Q8TDM5 124 aa6.56□□□□□ -1.36
COL6A3-205ENST00000392004 ZNF706Q9Y5V0 76 aaPredicted RBP6.56□□□□□ -1.36
COL6A3-205ENST00000392004 TRBV7-4A0A0J9YYF1 115 aa6.55□□□□□ -1.36
COL6A3-205ENST00000392004 PANO1I0J062 215 aa6.55□□□□□ -1.36
COL6A3-205ENST00000392004 PRYO14603 147 aa6.55□□□□□ -1.36
COL6A3-205ENST00000392004 FP248Q71RG6 208 aaPredicted RBP6.55□□□□□ -1.36
COL6A3-205ENST00000392004 Q8N9L7 120 aa6.54□□□□□ -1.36
COL6A3-205ENST00000392004 ERC2-IT1O76042 136 aa6.53□□□□□ -1.36
COL6A3-205ENST00000392004 Q6ZR54 194 aa6.53□□□□□ -1.36
COL6A3-205ENST00000392004 CNBPP62633 177 aaKnown RBP6.53□□□□□ -1.36
COL6A3-205ENST00000392004 ELOF1P60002 83 aaKnown RBP6.52□□□□□ -1.37
COL6A3-205ENST00000392004 A0A087WSZ3 146 aa6.52□□□□□ -1.37
COL6A3-205ENST00000392004 SPTSSBQ8NFR3 76 aa6.52□□□□□ -1.37
COL6A3-205ENST00000392004 TYMSOSQ8TAI1 123 aa6.52□□□□□ -1.37
COL6A3-205ENST00000392004 IGLV1-50A0A075B6I6 118 aa6.5□□□□□ -1.37
COL6A3-205ENST00000392004 NDUFB1O75438 58 aa6.5□□□□□ -1.37
COL6A3-205ENST00000392004 Q6ZRX8 168 aa6.5□□□□□ -1.37
COL6A3-205ENST00000392004 PRR4Q16378 134 aa6.49□□□□□ -1.37
COL6A3-205ENST00000392004 KRTAP26-1Q6PEX3 210 aa6.49□□□□□ -1.37
COL6A3-205ENST00000392004 IGKV4-1P06312 121 aa6.48□□□□□ -1.37
COL6A3-205ENST00000392004 PSPHP1O15172 72 aa6.47□□□□□ -1.37
COL6A3-205ENST00000392004 RETNLBQ9BQ08 111 aa6.47□□□□□ -1.37
COL6A3-205ENST00000392004 ZNF861PO60384 105 aa6.46□□□□□ -1.37
COL6A3-205ENST00000392004 OCR1Q9BZK8 76 aa6.46□□□□□ -1.38
COL6A3-205ENST00000392004 WFDC13Q8IUB5 93 aa6.45□□□□□ -1.38
COL6A3-205ENST00000392004 CSMD3Q7Z407 3707 aa6.45□□□□□ -1.38
COL6A3-205ENST00000392004 IGLV7-43P04211 117 aa6.45□□□□□ -1.38
COL6A3-205ENST00000392004 FAM229BQ4G0N7 80 aa6.44□□□□□ -1.38
COL6A3-205ENST00000392004 MP68P56378 58 aa6.43□□□□□ -1.38
COL6A3-205ENST00000392004 SMIM29Q86T20 159 aa6.43□□□□□ -1.38
COL6A3-205ENST00000392004 PRR26Q8N8Z3 221 aa6.43□□□□□ -1.38
COL6A3-205ENST00000392004 Q6ZRN7 208 aaPredicted RBP6.43□□□□□ -1.38
COL6A3-205ENST00000392004 TLX1NBP0CAT3 122 aa6.43□□□□□ -1.38
COL6A3-205ENST00000392004 Q5VSD8 79 aa6.42□□□□□ -1.38
COL6A3-205ENST00000392004 KCNQ1DNQ9H478 68 aa6.42□□□□□ -1.38
COL6A3-205ENST00000392004 IGHV6-1A0A0B4J1U7 121 aa6.42□□□□□ -1.38
COL6A3-205ENST00000392004 CHKB-CPT1BH3BT56 60 aa6.42□□□□□ -1.38
COL6A3-205ENST00000392004 A0A1B0GW54 56 aa6.39□□□□□ -1.39
COL6A3-205ENST00000392004 A6NED7 52 aa6.38□□□□□ -1.39
COL6A3-205ENST00000392004 Q8N377 158 aa6.38□□□□□ -1.39
COL6A3-205ENST00000392004 RBM12B-AS1Q9P1G2 102 aa6.38□□□□□ -1.39
COL6A3-205ENST00000392004 hDV103S1A0JD37 113 aa6.37□□□□□ -1.39
COL6A3-205ENST00000392004 Q8NBF4 154 aa6.37□□□□□ -1.39
COL6A3-205ENST00000392004 C1orf64Q8NEQ6 169 aa6.36□□□□□ -1.39
COL6A3-205ENST00000392004 IGLV5-48A0A075B6I7 105 aa6.35□□□□□ -1.39
COL6A3-205ENST00000392004 PLAC8Q9NZF1 115 aa6.35□□□□□ -1.39
COL6A3-205ENST00000392004 A0A1W2PNM2 257 aa6.34□□□□□ -1.39
COL6A3-205ENST00000392004 C9orf92A6NGG3 77 aa6.34□□□□□ -1.4
COL6A3-205ENST00000392004 LINC00304Q8N9R0 145 aa6.33□□□□□ -1.4
COL6A3-205ENST00000392004 PRR15LQ9BU68 103 aa6.33□□□□□ -1.4
COL6A3-205ENST00000392004 KRTAP11-1Q8IUC1 163 aa6.33□□□□□ -1.4
COL6A3-205ENST00000392004 HCG22E2RYF7 251 aa6.33□□□□□ -1.4
COL6A3-205ENST00000392004 Q1T7F1 81 aa6.32□□□□□ -1.4
COL6A3-205ENST00000392004 PRR15Q8IV56 129 aa6.32□□□□□ -1.4
COL6A3-205ENST00000392004 K7EQZ3 153 aa6.31□□□□□ -1.4
COL6A3-205ENST00000392004 SPRR4Q96PI1 79 aa6.31□□□□□ -1.4
COL6A3-205ENST00000392004 PLA2G2DQ9UNK4 145 aa6.3□□□□□ -1.4
COL6A3-205ENST00000392004 A8MUN3 132 aa6.29□□□□□ -1.4
COL6A3-205ENST00000392004 DSCR10P59022 87 aa6.29□□□□□ -1.4
COL6A3-205ENST00000392004 TRAV22A0A0B4J277 110 aa6.28□□□□□ -1.4
COL6A3-205ENST00000392004 IGFL1Q6UW32 110 aa6.28□□□□□ -1.4
COL6A3-205ENST00000392004 LINC00208Q96KT6 92 aa6.28□□□□□ -1.4
COL6A3-205ENST00000392004 LIMD2Q9BT23 127 aa6.28□□□□□ -1.4
COL6A3-205ENST00000392004 KTN1-AS1Q86SY8 53 aa6.27□□□□□ -1.41
COL6A3-205ENST00000392004 CYP4F30PQ9H0H9 118 aa6.27□□□□□ -1.41
COL6A3-205ENST00000392004 ZCCHC13Q8WW36 166 aaKnown RBP6.27□□□□□ -1.41
COL6A3-205ENST00000392004 C8orf87E5RJ46 101 aa6.26□□□□□ -1.41
COL6A3-205ENST00000392004 KRTAP7-1Q8IUC3 87 aa6.24□□□□□ -1.41
COL6A3-205ENST00000392004 IGLV5-37A0A075B6J1 123 aa6.24□□□□□ -1.41
COL6A3-205ENST00000392004 H0Y9P7 68 aa6.23□□□□□ -1.41
COL6A3-205ENST00000392004 Q96NJ1 140 aa6.22□□□□□ -1.41
COL6A3-205ENST00000392004 PRKDCP78527 4128 aaKnown RBP6.21□□□□□ -1.41
COL6A3-205ENST00000392004 CASC2Q6XLA1 102 aa6.21□□□□□ -1.42
COL6A3-205ENST00000392004 SPRR1AP35321 89 aa6.21□□□□□ -1.42
COL6A3-205ENST00000392004 HUWE1Q7Z6Z7 4374 aaKnown RBP6.21□□□□□ -1.42
COL6A3-205ENST00000392004 A0A087X002 238 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 SSBP3-AS1Q7Z2R9 100 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 IGKV2D-30A0A075B6S6 120 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 KRTAP4-16G5E9R7 235 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms