RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 Q8N9L7 120 aa6.19□□□□□ -1.42
COL6A3-204ENST00000392003 SPRR1AP35321 89 aa6.18□□□□□ -1.42
COL6A3-204ENST00000392003 C14orf177Q52M58 125 aa6.18□□□□□ -1.42
COL6A3-204ENST00000392003 REG3GQ6UW15 175 aa6.18□□□□□ -1.42
COL6A3-204ENST00000392003 IGKV2-24A0A0C4DH68 120 aa6.18□□□□□ -1.42
COL6A3-204ENST00000392003 BPY2O14599 106 aa6.18□□□□□ -1.42
COL6A3-204ENST00000392003 LINC00313P59037 77 aa6.17□□□□□ -1.42
COL6A3-204ENST00000392003 APLNQ9ULZ1 77 aa6.17□□□□□ -1.42
COL6A3-204ENST00000392003 C3orf84H3BNL1 204 aa6.17□□□□□ -1.42
COL6A3-204ENST00000392003 ADM2Q7Z4H4 148 aa6.17□□□□□ -1.42
COL6A3-204ENST00000392003 Q9BRP9 147 aa6.17□□□□□ -1.42
COL6A3-204ENST00000392003 IGLV5-48A0A075B6I7 105 aa6.16□□□□□ -1.42
COL6A3-204ENST00000392003 KRTAP4-16G5E9R7 235 aaPredicted RBP6.16□□□□□ -1.42
COL6A3-204ENST00000392003 ANK2Q01484 3957 aa6.16□□□□□ -1.42
COL6A3-204ENST00000392003 C1orf137Q5JT78 98 aa6.15□□□□□ -1.42
COL6A3-204ENST00000392003 ST20-AS1Q8NBB2 130 aa6.15□□□□□ -1.42
COL6A3-204ENST00000392003 A0A1B0GW54 56 aa6.15□□□□□ -1.43
COL6A3-204ENST00000392003 CMYA5Q8N3K9 4069 aa6.15□□□□□ -1.43
COL6A3-204ENST00000392003 A0A096LNI7 61 aa6.14□□□□□ -1.43
COL6A3-204ENST00000392003 KRTAP7-1Q8IUC3 87 aa6.14□□□□□ -1.43
COL6A3-204ENST00000392003 UBE2AP49459 152 aa6.13□□□□□ -1.43
COL6A3-204ENST00000392003 CNBPP62633 177 aaKnown RBP6.13□□□□□ -1.43
COL6A3-204ENST00000392003 KRTAP1-5Q9BYS1 174 aa6.13□□□□□ -1.43
COL6A3-204ENST00000392003 TENM2Q9NT68 2774 aa6.13□□□□□ -1.43
COL6A3-204ENST00000392003 ATP11AUNQ6ZP68 121 aa6.13□□□□□ -1.43
COL6A3-204ENST00000392003 ERC2-IT1O76042 136 aa6.12□□□□□ -1.43
COL6A3-204ENST00000392003 NBDYA0A0U1RRE5 68 aa6.12□□□□□ -1.43
COL6A3-204ENST00000392003 PRR15LQ9BU68 103 aa6.12□□□□□ -1.43
COL6A3-204ENST00000392003 LINC01554Q52M75 96 aa6.11□□□□□ -1.43
COL6A3-204ENST00000392003 Q8NBF4 154 aa6.11□□□□□ -1.43
COL6A3-204ENST00000392003 A0A1W2PNM2 257 aa6.11□□□□□ -1.43
COL6A3-204ENST00000392003 A6NED7 52 aa6.1□□□□□ -1.43
COL6A3-204ENST00000392003 MOBPQ13875 183 aa6.1□□□□□ -1.43
COL6A3-204ENST00000392003 A0A1W2PNN7 141 aa6.1□□□□□ -1.43
COL6A3-204ENST00000392003 TNP2Q05952 138 aa6.09□□□□□ -1.43
COL6A3-204ENST00000392003 OCR1Q9BZK8 76 aa6.09□□□□□ -1.43
COL6A3-204ENST00000392003 HUWE1Q7Z6Z7 4374 aaKnown RBP6.09□□□□□ -1.43
COL6A3-204ENST00000392003 DNAH3Q8TD57 4116 aa6.09□□□□□ -1.43
COL6A3-204ENST00000392003 IGKV4-1P06312 121 aa6.09□□□□□ -1.43
COL6A3-204ENST00000392003 PRLHP81277 87 aa6.09□□□□□ -1.43
COL6A3-204ENST00000392003 FAM30AQ9NZY2 134 aa6.08□□□□□ -1.44
COL6A3-204ENST00000392003 ZNF706Q9Y5V0 76 aaPredicted RBP6.08□□□□□ -1.44
COL6A3-204ENST00000392003 LINC00476Q8WZB0 136 aa6.07□□□□□ -1.44
COL6A3-204ENST00000392003 CHTF8P0CG12 524 aa6.06□□□□□ -1.44
COL6A3-204ENST00000392003 SPRR4Q96PI1 79 aa6.06□□□□□ -1.44
COL6A3-204ENST00000392003 C9orf163Q8N9P6 203 aa6.06□□□□□ -1.44
COL6A3-204ENST00000392003 COL7A1Q02388 2944 aa6.06□□□□□ -1.44
COL6A3-204ENST00000392003 A0A0A0MQY5 61 aa6.05□□□□□ -1.44
COL6A3-204ENST00000392003 LY6G6CO95867 125 aa6.05□□□□□ -1.44
COL6A3-204ENST00000392003 SMIM29Q86T20 159 aa6.05□□□□□ -1.44
COL6A3-204ENST00000392003 Q8N9P0 234 aaPredicted RBP6.04□□□□□ -1.44
COL6A3-204ENST00000392003 KRTAP21-3Q3LHN1 58 aa6.04□□□□□ -1.44
COL6A3-204ENST00000392003 IGFL1Q6UW32 110 aa6.03□□□□□ -1.44
COL6A3-204ENST00000392003 H0Y9J4 135 aa6.01□□□□□ -1.45
COL6A3-204ENST00000392003 IGLV8-61A0A075B6I0 122 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 A0A087WSZ3 146 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 MP68P56378 58 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 DNAH9Q9NYC9 4486 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 A0A0G2JQZ4 141 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 C1orf134Q5TEV5 83 aa6□□□□□ -1.45
COL6A3-204ENST00000392003 CDC42SE1Q9NRR8 79 aa5.99□□□□□ -1.45
COL6A3-204ENST00000392003 DSCR10P59022 87 aa5.99□□□□□ -1.45
COL6A3-204ENST00000392003 K7EQZ3 153 aa5.98□□□□□ -1.45
COL6A3-204ENST00000392003 A0A087WTM6 91 aa5.98□□□□□ -1.45
COL6A3-204ENST00000392003 SPRR1BP22528 89 aa5.98□□□□□ -1.45
COL6A3-204ENST00000392003 Q6ZRN7 208 aaPredicted RBP5.97□□□□□ -1.45
COL6A3-204ENST00000392003 KRTAP11-1Q8IUC1 163 aa5.97□□□□□ -1.45
COL6A3-204ENST00000392003 MEGF8Q7Z7M0 2845 aa5.97□□□□□ -1.45
COL6A3-204ENST00000392003 DNHD1Q96M86 4753 aa5.97□□□□□ -1.45
COL6A3-204ENST00000392003 TGP01266 2768 aa5.96□□□□□ -1.45
COL6A3-204ENST00000392003 DEFB116Q30KQ4 102 aa5.96□□□□□ -1.45
COL6A3-204ENST00000392003 Q75L30 129 aa5.96□□□□□ -1.45
COL6A3-204ENST00000392003 IGLV5-52A0A0A0MRZ9 124 aa5.95□□□□□ -1.46
COL6A3-204ENST00000392003 SPINK7P58062 85 aa5.95□□□□□ -1.46
COL6A3-204ENST00000392003 WWC2-AS2Q96NR7 200 aa5.95□□□□□ -1.46
COL6A3-204ENST00000392003 RTL8CO15255 209 aa5.95□□□□□ -1.46
COL6A3-204ENST00000392003 ZCCHC13Q8WW36 166 aaKnown RBP5.95□□□□□ -1.46
COL6A3-204ENST00000392003 CYP4F30PQ9H0H9 118 aa5.94□□□□□ -1.46
COL6A3-204ENST00000392003 LIMD2Q9BT23 127 aa5.94□□□□□ -1.46
COL6A3-204ENST00000392003 PANO1I0J062 215 aa5.94□□□□□ -1.46
COL6A3-204ENST00000392003 DNAH1Q9P2D7 4330 aa5.93□□□□□ -1.46
COL6A3-204ENST00000392003 WFDC13Q8IUB5 93 aa5.93□□□□□ -1.46
COL6A3-204ENST00000392003 SPACA4Q8TDM5 124 aa5.93□□□□□ -1.46
COL6A3-204ENST00000392003 RETNLBQ9BQ08 111 aa5.93□□□□□ -1.46
COL6A3-204ENST00000392003 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.93□□□□□ -1.46
COL6A3-204ENST00000392003 NDUFB1O75438 58 aa5.92□□□□□ -1.46
COL6A3-204ENST00000392003 RPL37AP61513 92 aaKnown RBP5.91□□□□□ -1.46
COL6A3-204ENST00000392003 Q6ZR54 194 aa5.91□□□□□ -1.46
COL6A3-204ENST00000392003 FBN3Q75N90 2809 aa5.91□□□□□ -1.46
COL6A3-204ENST00000392003 IGLV9-49A0A0B4J1Y8 123 aa5.9□□□□□ -1.46
COL6A3-204ENST00000392003 KRTAP13-1Q8IUC0 172 aa5.9□□□□□ -1.47
COL6A3-204ENST00000392003 LINC00208Q96KT6 92 aa5.89□□□□□ -1.47
COL6A3-204ENST00000392003 LOC101927531A0A1B0GV80 90 aa5.89□□□□□ -1.47
COL6A3-204ENST00000392003 CASC2Q6XLA1 102 aa5.89□□□□□ -1.47
COL6A3-204ENST00000392003 PLECQ15149 4684 aaKnown RBP5.88□□□□□ -1.47
COL6A3-204ENST00000392003 LCE6AA0A183 80 aa5.88□□□□□ -1.47
COL6A3-204ENST00000392003 A8MWP4 228 aa5.88□□□□□ -1.47
COL6A3-204ENST00000392003 PRKDCP78527 4128 aaKnown RBP5.87□□□□□ -1.47
COL6A3-204ENST00000392003 LINC00472Q9H8W2 130 aa5.87□□□□□ -1.47
COL6A3-204ENST00000392003 SPAG11AQ6PDA7 123 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms