RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 C1orf134Q5TEV5 83 aa13.51□□□□□ -0.25
TRIM54-202ENST00000380075 SPRR4Q96PI1 79 aa13.51□□□□□ -0.25
TRIM54-202ENST00000380075 SCXQ7RTU7 201 aa13.5□□□□□ -0.25
TRIM54-202ENST00000380075 SMIM29Q86T20 159 aa13.5□□□□□ -0.25
TRIM54-202ENST00000380075 CHTF8P0CG12 524 aa13.49□□□□□ -0.25
TRIM54-202ENST00000380075 TRAV7A0A075B6U4 112 aa13.49□□□□□ -0.25
TRIM54-202ENST00000380075 BPY2O14599 106 aa13.48□□□□□ -0.25
TRIM54-202ENST00000380075 PRLHP81277 87 aa13.48□□□□□ -0.25
TRIM54-202ENST00000380075 RTL8CO15255 209 aa13.47□□□□□ -0.25
TRIM54-202ENST00000380075 PHF5AQ7RTV0 110 aaKnown RBP13.47□□□□□ -0.25
TRIM54-202ENST00000380075 DNAH17Q9UFH2 4485 aa13.46□□□□□ -0.26
TRIM54-202ENST00000380075 FAT2Q9NYQ8 4349 aa13.45□□□□□ -0.26
TRIM54-202ENST00000380075 IGLV8-61A0A075B6I0 122 aa13.45□□□□□ -0.26
TRIM54-202ENST00000380075 HIGD2AQ9BW72 106 aa13.45□□□□□ -0.26
TRIM54-202ENST00000380075 IGKV4-1P06312 121 aa13.43□□□□□ -0.26
TRIM54-202ENST00000380075 EPM2AB3EWF7 344 aa13.4□□□□□ -0.26
TRIM54-202ENST00000380075 SPRR1BP22528 89 aa13.4□□□□□ -0.26
TRIM54-202ENST00000380075 KRTAP11-1Q8IUC1 163 aa13.4□□□□□ -0.27
TRIM54-202ENST00000380075 TMEM258P61165 79 aa13.39□□□□□ -0.27
TRIM54-202ENST00000380075 A0A087WTM6 91 aa13.38□□□□□ -0.27
TRIM54-202ENST00000380075 UBE2AP49459 152 aa13.37□□□□□ -0.27
TRIM54-202ENST00000380075 IGFL1Q6UW32 110 aa13.37□□□□□ -0.27
TRIM54-202ENST00000380075 SPACA4Q8TDM5 124 aa13.36□□□□□ -0.27
TRIM54-202ENST00000380075 CYSTM1Q9H1C7 97 aa13.36□□□□□ -0.27
TRIM54-202ENST00000380075 Q8N9L7 120 aa13.35□□□□□ -0.27
TRIM54-202ENST00000380075 LINC00336Q6ZUF6 198 aa13.34□□□□□ -0.27
TRIM54-202ENST00000380075 C20orf197Q8N268 126 aa13.34□□□□□ -0.27
TRIM54-202ENST00000380075 DPH3Q96FX2 82 aa13.33□□□□□ -0.28
TRIM54-202ENST00000380075 PANO1I0J062 215 aa13.32□□□□□ -0.28
TRIM54-202ENST00000380075 DNAH11Q96DT5 4516 aa13.31□□□□□ -0.28
TRIM54-202ENST00000380075 PKD1P98161 4303 aa13.31□□□□□ -0.28
TRIM54-202ENST00000380075 KRTAP13-1Q8IUC0 172 aa13.31□□□□□ -0.28
TRIM54-202ENST00000380075 KLKP1Q107X0 134 aa13.29□□□□□ -0.28
TRIM54-202ENST00000380075 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.29□□□□□ -0.28
TRIM54-202ENST00000380075 HECTD4Q9Y4D8 3996 aa13.29□□□□□ -0.28
TRIM54-202ENST00000380075 DSCR10P59022 87 aa13.25□□□□□ -0.29
TRIM54-202ENST00000380075 A0A1B0GVY2 172 aa13.24□□□□□ -0.29
TRIM54-202ENST00000380075 RPS28P62857 69 aaKnown RBP13.23□□□□□ -0.29
TRIM54-202ENST00000380075 OCR1Q9BZK8 76 aa13.23□□□□□ -0.29
TRIM54-202ENST00000380075 EPPK1P58107 5090 aaKnown RBP13.23□□□□□ -0.29
TRIM54-202ENST00000380075 PKHD1P08F94 4074 aa13.22□□□□□ -0.29
TRIM54-202ENST00000380075 A0A087WSZ3 146 aa13.21□□□□□ -0.29
TRIM54-202ENST00000380075 A0A0G2JQZ4 141 aa13.21□□□□□ -0.29
TRIM54-202ENST00000380075 J3KT08 172 aa13.21□□□□□ -0.29
TRIM54-202ENST00000380075 NDUFC1O43677 76 aa13.2□□□□□ -0.3
TRIM54-202ENST00000380075 KRTAP10-2P60368 255 aa13.19□□□□□ -0.3
TRIM54-202ENST00000380075 PLAC8Q9NZF1 115 aa13.19□□□□□ -0.3
TRIM54-202ENST00000380075 H7BZZ5 65 aa13.18□□□□□ -0.3
TRIM54-202ENST00000380075 K7EQZ3 153 aa13.18□□□□□ -0.3
TRIM54-202ENST00000380075 TMEM254Q8TBM7 123 aa13.16□□□□□ -0.3
TRIM54-202ENST00000380075 ZNF706Q9Y5V0 76 aaPredicted RBP13.16□□□□□ -0.3
TRIM54-202ENST00000380075 DNAH5Q8TE73 4624 aa13.16□□□□□ -0.3
TRIM54-202ENST00000380075 IGLV5-52A0A0A0MRZ9 124 aa13.15□□□□□ -0.3
TRIM54-202ENST00000380075 SNURFQ9Y675 71 aa13.14□□□□□ -0.31
TRIM54-202ENST00000380075 LINC00483Q53H64 154 aa13.13□□□□□ -0.31
TRIM54-202ENST00000380075 RPL37AP61513 92 aaKnown RBP13.12□□□□□ -0.31
TRIM54-202ENST00000380075 FAM236DA0A1B0GTK5 79 aa13.12□□□□□ -0.31
TRIM54-202ENST00000380075 FAM236CP0DP71 79 aa13.12□□□□□ -0.31
TRIM54-202ENST00000380075 HCG22E2RYF7 251 aa13.11□□□□□ -0.31
TRIM54-202ENST00000380075 PSORS1C2Q9UIG4 136 aa13.1□□□□□ -0.31
TRIM54-202ENST00000380075 A0A0U1RQV1 116 aa13.07□□□□□ -0.32
TRIM54-202ENST00000380075 DYNC1H1Q14204 4646 aaKnown RBP13.07□□□□□ -0.32
TRIM54-202ENST00000380075 ZNF861PO60384 105 aa13.05□□□□□ -0.32
TRIM54-202ENST00000380075 LINC00472Q9H8W2 130 aa13.05□□□□□ -0.32
TRIM54-202ENST00000380075 FAM30AQ9NZY2 134 aa13.05□□□□□ -0.32
TRIM54-202ENST00000380075 LRP1BQ9NZR2 4599 aa13.05□□□□□ -0.32
TRIM54-202ENST00000380075 ATP5EP56381 51 aaPredicted RBP13.04□□□□□ -0.32
TRIM54-202ENST00000380075 DEFB116Q30KQ4 102 aa13.04□□□□□ -0.32
TRIM54-202ENST00000380075 A8MWP4 228 aa13.01□□□□□ -0.33
TRIM54-202ENST00000380075 IGLV9-49A0A0B4J1Y8 123 aa13.01□□□□□ -0.33
TRIM54-202ENST00000380075 PRR15Q8IV56 129 aa13□□□□□ -0.33
TRIM54-202ENST00000380075 KRTAP10-1P60331 282 aa12.99□□□□□ -0.33
TRIM54-202ENST00000380075 C5orf47Q569G3 176 aa12.98□□□□□ -0.33
TRIM54-202ENST00000380075 SERP1Q9Y6X1 66 aa12.98□□□□□ -0.33
TRIM54-202ENST00000380075 KRTAP29-1A8MX34 341 aaPredicted RBP12.96□□□□□ -0.34
TRIM54-202ENST00000380075 WFDC13Q8IUB5 93 aa12.94□□□□□ -0.34
TRIM54-202ENST00000380075 BIRC6Q9NR09 4857 aa12.93□□□□□ -0.34
TRIM54-202ENST00000380075 IGLV7-43P04211 117 aa12.93□□□□□ -0.34
TRIM54-202ENST00000380075 DNAH8Q96JB1 4490 aa12.92□□□□□ -0.34
TRIM54-202ENST00000380075 NDUFB1O75438 58 aa12.91□□□□□ -0.34
TRIM54-202ENST00000380075 CASC2Q6XLA1 102 aa12.91□□□□□ -0.34
TRIM54-202ENST00000380075 OXTP01178 125 aa12.9□□□□□ -0.34
TRIM54-202ENST00000380075 MOBPQ13875 183 aa12.9□□□□□ -0.34
TRIM54-202ENST00000380075 APOBP04114 4563 aaKnown RBP12.89□□□□□ -0.35
TRIM54-202ENST00000380075 ZCCHC13Q8WW36 166 aaKnown RBP12.89□□□□□ -0.35
TRIM54-202ENST00000380075 Q96NJ1 140 aa12.87□□□□□ -0.35
TRIM54-202ENST00000380075 SRRM2Q9UQ35 2752 aaKnown RBP12.86□□□□□ -0.35
TRIM54-202ENST00000380075 Q6ZSA8 131 aa12.85□□□□□ -0.35
TRIM54-202ENST00000380075 CIRBP-AS1Q8TBR5 109 aa12.84□□□□□ -0.35
TRIM54-202ENST00000380075 KIAA1109Q2LD37 5005 aa12.84□□□□□ -0.35
TRIM54-202ENST00000380075 MP68P56378 58 aa12.83□□□□□ -0.35
TRIM54-202ENST00000380075 MMP24-AS1A0A0U1RRL7 71 aa12.82□□□□□ -0.36
TRIM54-202ENST00000380075 HRCT1Q6UXD1 115 aa12.81□□□□□ -0.36
TRIM54-202ENST00000380075 ANAPC11Q9NYG5 84 aa12.81□□□□□ -0.36
TRIM54-202ENST00000380075 H3BPC8 53 aa12.8□□□□□ -0.36
TRIM54-202ENST00000380075 HSPG2P98160 4391 aa12.8□□□□□ -0.36
TRIM54-202ENST00000380075 RYR1P21817 5038 aa12.79□□□□□ -0.36
TRIM54-202ENST00000380075 CDK2AP2O75956 126 aa12.78□□□□□ -0.36
TRIM54-202ENST00000380075 hDV103S1A0JD37 113 aa12.77□□□□□ -0.37
TRIM54-202ENST00000380075 CD164Q04900 197 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms