RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DNHD1Q96M86 4753 aa8.42□□□□□ -1.06
CCDC3-202ENST00000378839 SMIM26A0A096LP01 95 aa8.42□□□□□ -1.06
CCDC3-202ENST00000378839 PSCAO43653 123 aa8.42□□□□□ -1.06
CCDC3-202ENST00000378839 VPS13DQ5THJ4 4388 aa8.42□□□□□ -1.06
CCDC3-202ENST00000378839 UBE2BP63146 152 aa8.42□□□□□ -1.06
CCDC3-202ENST00000378839 PRLHP81277 87 aa8.41□□□□□ -1.06
CCDC3-202ENST00000378839 KMT2AQ03164 3969 aa8.41□□□□□ -1.06
CCDC3-202ENST00000378839 NREPQ16612 68 aa8.4□□□□□ -1.06
CCDC3-202ENST00000378839 C1orf195Q5TG92 126 aa8.4□□□□□ -1.06
CCDC3-202ENST00000378839 PANO1I0J062 215 aa8.39□□□□□ -1.07
CCDC3-202ENST00000378839 IGKV4-1P06312 121 aa8.39□□□□□ -1.07
CCDC3-202ENST00000378839 C1orf137Q5JT78 98 aa8.39□□□□□ -1.07
CCDC3-202ENST00000378839 PHF5AQ7RTV0 110 aaKnown RBP8.39□□□□□ -1.07
CCDC3-202ENST00000378839 DNAH2Q9P225 4427 aa8.39□□□□□ -1.07
CCDC3-202ENST00000378839 TMEM254Q8TBM7 123 aa8.38□□□□□ -1.07
CCDC3-202ENST00000378839 HIGD2AQ9BW72 106 aa8.38□□□□□ -1.07
CCDC3-202ENST00000378839 Q6ZRN7 208 aaPredicted RBP8.38□□□□□ -1.07
CCDC3-202ENST00000378839 KLKP1Q107X0 134 aa8.36□□□□□ -1.07
CCDC3-202ENST00000378839 FAM30AQ9NZY2 134 aa8.36□□□□□ -1.07
CCDC3-202ENST00000378839 HECTD4Q9Y4D8 3996 aa8.36□□□□□ -1.07
CCDC3-202ENST00000378839 MEGF8Q7Z7M0 2845 aa8.36□□□□□ -1.07
CCDC3-202ENST00000378839 NBDYA0A0U1RRE5 68 aa8.35□□□□□ -1.07
CCDC3-202ENST00000378839 PSPHP1O15172 72 aa8.35□□□□□ -1.07
CCDC3-202ENST00000378839 FUSP35637 526 aaKnown RBP eCLIP8.35□□□□□ -1.07
CCDC3-202ENST00000378839 Q8NBF4 154 aa8.35□□□□□ -1.07
CCDC3-202ENST00000378839 V9GYY9 64 aa8.34□□□□□ -1.07
CCDC3-202ENST00000378839 LINC00476Q8WZB0 136 aa8.34□□□□□ -1.07
CCDC3-202ENST00000378839 SPRR4Q96PI1 79 aa8.34□□□□□ -1.07
CCDC3-202ENST00000378839 BCE1O60756 84 aa8.33□□□□□ -1.08
CCDC3-202ENST00000378839 C9orf163Q8N9P6 203 aa8.33□□□□□ -1.08
CCDC3-202ENST00000378839 SEC61GP60059 68 aa8.32□□□□□ -1.08
CCDC3-202ENST00000378839 IGFL1Q6UW32 110 aa8.31□□□□□ -1.08
CCDC3-202ENST00000378839 FRAS1Q86XX4 4008 aa8.3□□□□□ -1.08
CCDC3-202ENST00000378839 EPM2AB3EWF7 344 aa8.3□□□□□ -1.08
CCDC3-202ENST00000378839 DSCR10P59022 87 aa8.29□□□□□ -1.08
CCDC3-202ENST00000378839 C14orf177Q52M58 125 aa8.29□□□□□ -1.08
CCDC3-202ENST00000378839 FBN3Q75N90 2809 aa8.28□□□□□ -1.08
CCDC3-202ENST00000378839 NUPR2A6NF83 97 aa8.28□□□□□ -1.08
CCDC3-202ENST00000378839 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.28□□□□□ -1.08
CCDC3-202ENST00000378839 DEFB116Q30KQ4 102 aa8.27□□□□□ -1.09
CCDC3-202ENST00000378839 OCR1Q9BZK8 76 aa8.27□□□□□ -1.09
CCDC3-202ENST00000378839 DNAH8Q96JB1 4490 aa8.26□□□□□ -1.09
CCDC3-202ENST00000378839 A0A1B0GW54 56 aa8.26□□□□□ -1.09
CCDC3-202ENST00000378839 DNAH17Q9UFH2 4485 aa8.25□□□□□ -1.09
CCDC3-202ENST00000378839 IGLV8-61A0A075B6I0 122 aa8.25□□□□□ -1.09
CCDC3-202ENST00000378839 K7EQZ3 153 aa8.25□□□□□ -1.09
CCDC3-202ENST00000378839 A8MU10 97 aa8.24□□□□□ -1.09
CCDC3-202ENST00000378839 KRTAP13-1Q8IUC0 172 aa8.23□□□□□ -1.09
CCDC3-202ENST00000378839 UBE2AP49459 152 aa8.22□□□□□ -1.09
CCDC3-202ENST00000378839 H0Y9J4 135 aa8.22□□□□□ -1.09
CCDC3-202ENST00000378839 SPACA4Q8TDM5 124 aa8.22□□□□□ -1.09
CCDC3-202ENST00000378839 A0A087WSZ3 146 aa8.21□□□□□ -1.09
CCDC3-202ENST00000378839 A0A087WTM6 91 aa8.21□□□□□ -1.1
CCDC3-202ENST00000378839 SPRR1BP22528 89 aa8.21□□□□□ -1.1
CCDC3-202ENST00000378839 NDUFC1O43677 76 aa8.2□□□□□ -1.1
CCDC3-202ENST00000378839 DNAH6Q9C0G6 4158 aa8.19□□□□□ -1.1
CCDC3-202ENST00000378839 RPL37AP61513 92 aaKnown RBP8.18□□□□□ -1.1
CCDC3-202ENST00000378839 Q6ZR54 194 aa8.18□□□□□ -1.1
CCDC3-202ENST00000378839 C1orf64Q8NEQ6 169 aa8.17□□□□□ -1.1
CCDC3-202ENST00000378839 SPTSSBQ8NFR3 76 aa8.15□□□□□ -1.11
CCDC3-202ENST00000378839 TGP01266 2768 aa8.15□□□□□ -1.11
CCDC3-202ENST00000378839 WFDC13Q8IUB5 93 aa8.14□□□□□ -1.11
CCDC3-202ENST00000378839 A8MUN3 132 aa8.14□□□□□ -1.11
CCDC3-202ENST00000378839 RTL8CO15255 209 aa8.14□□□□□ -1.11
CCDC3-202ENST00000378839 ALMS1Q8TCU4 4167 aa8.14□□□□□ -1.11
CCDC3-202ENST00000378839 PMAIP1Q13794 54 aa8.13□□□□□ -1.11
CCDC3-202ENST00000378839 DNAH5Q8TE73 4624 aa8.13□□□□□ -1.11
CCDC3-202ENST00000378839 ATP5EP56381 51 aaPredicted RBP8.12□□□□□ -1.11
CCDC3-202ENST00000378839 LCE6AA0A183 80 aa8.12□□□□□ -1.11
CCDC3-202ENST00000378839 DNAH11Q96DT5 4516 aa8.12□□□□□ -1.11
CCDC3-202ENST00000378839 HCG22E2RYF7 251 aa8.11□□□□□ -1.11
CCDC3-202ENST00000378839 LINC00472Q9H8W2 130 aa8.11□□□□□ -1.11
CCDC3-202ENST00000378839 PSORS1C2Q9UIG4 136 aa8.1□□□□□ -1.11
CCDC3-202ENST00000378839 HYDINQ4G0P3 5121 aa8.09□□□□□ -1.11
CCDC3-202ENST00000378839 ANAPC11Q9NYG5 84 aa8.09□□□□□ -1.11
CCDC3-202ENST00000378839 TRAV22A0A0B4J277 110 aa8.09□□□□□ -1.11
CCDC3-202ENST00000378839 hDV103S1A0JD37 113 aa8.08□□□□□ -1.12
CCDC3-202ENST00000378839 IGLV9-49A0A0B4J1Y8 123 aa8.08□□□□□ -1.12
CCDC3-202ENST00000378839 KRTAP29-1A8MX34 341 aaPredicted RBP8.07□□□□□ -1.12
CCDC3-202ENST00000378839 IGLV5-52A0A0A0MRZ9 124 aa8.07□□□□□ -1.12
CCDC3-202ENST00000378839 PLAC8Q9NZF1 115 aa8.07□□□□□ -1.12
CCDC3-202ENST00000378839 LINC00483Q53H64 154 aa8.06□□□□□ -1.12
CCDC3-202ENST00000378839 WWC2-AS2Q96NR7 200 aa8.06□□□□□ -1.12
CCDC3-202ENST00000378839 ZCCHC13Q8WW36 166 aaKnown RBP8.06□□□□□ -1.12
CCDC3-202ENST00000378839 PKD1P98161 4303 aa8.05□□□□□ -1.12
CCDC3-202ENST00000378839 Q96NJ1 140 aa8.05□□□□□ -1.12
CCDC3-202ENST00000378839 FAT2Q9NYQ8 4349 aa8.04□□□□□ -1.12
CCDC3-202ENST00000378839 CHKB-CPT1BH3BT56 60 aa8.04□□□□□ -1.12
CCDC3-202ENST00000378839 PRR15Q8IV56 129 aa8.04□□□□□ -1.12
CCDC3-202ENST00000378839 LINC00208Q96KT6 92 aa8.04□□□□□ -1.12
CCDC3-202ENST00000378839 MOBPQ13875 183 aa8.03□□□□□ -1.12
CCDC3-202ENST00000378839 C1orf134Q5TEV5 83 aa8.03□□□□□ -1.12
CCDC3-202ENST00000378839 LY6G6CO95867 125 aa8.02□□□□□ -1.13
CCDC3-202ENST00000378839 A8MWP4 228 aa8.02□□□□□ -1.13
CCDC3-202ENST00000378839 KRTAP10-2P60368 255 aa8□□□□□ -1.13
CCDC3-202ENST00000378839 LRP1BQ9NZR2 4599 aa8□□□□□ -1.13
CCDC3-202ENST00000378839 ZNF861PO60384 105 aa8□□□□□ -1.13
CCDC3-202ENST00000378839 PRR15LQ9BU68 103 aa8□□□□□ -1.13
CCDC3-202ENST00000378839 CASC2Q6XLA1 102 aa7.98□□□□□ -1.13
CCDC3-202ENST00000378839 MMP24-AS1A0A0U1RRL7 71 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms