RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 H7BZZ5 65 aa9.61□□□□□ -0.87
UPF3B-202ENST00000345865 KLKP1Q107X0 134 aa9.61□□□□□ -0.87
UPF3B-202ENST00000345865 EPM2AB3EWF7 344 aa9.61□□□□□ -0.87
UPF3B-202ENST00000345865 DNHD1Q96M86 4753 aa9.6□□□□□ -0.87
UPF3B-202ENST00000345865 J3KT08 172 aa9.6□□□□□ -0.87
UPF3B-202ENST00000345865 DSCR10P59022 87 aa9.6□□□□□ -0.87
UPF3B-202ENST00000345865 F8WEM9 126 aa9.59□□□□□ -0.87
UPF3B-202ENST00000345865 OXTP01178 125 aa9.59□□□□□ -0.87
UPF3B-202ENST00000345865 OCR1Q9BZK8 76 aa9.59□□□□□ -0.87
UPF3B-202ENST00000345865 MEGF8Q7Z7M0 2845 aa9.59□□□□□ -0.87
UPF3B-202ENST00000345865 RPS28P62857 69 aaKnown RBP9.58□□□□□ -0.88
UPF3B-202ENST00000345865 IGLV8-61A0A075B6I0 122 aa9.57□□□□□ -0.88
UPF3B-202ENST00000345865 H0Y9J4 135 aa9.56□□□□□ -0.88
UPF3B-202ENST00000345865 K7EQZ3 153 aa9.55□□□□□ -0.88
UPF3B-202ENST00000345865 FRAS1Q86XX4 4008 aa9.55□□□□□ -0.88
UPF3B-202ENST00000345865 UBE2AP49459 152 aa9.55□□□□□ -0.88
UPF3B-202ENST00000345865 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.54□□□□□ -0.88
UPF3B-202ENST00000345865 DNAH17Q9UFH2 4485 aa9.54□□□□□ -0.88
UPF3B-202ENST00000345865 DEFB116Q30KQ4 102 aa9.54□□□□□ -0.88
UPF3B-202ENST00000345865 A0A087WSZ3 146 aa9.53□□□□□ -0.88
UPF3B-202ENST00000345865 SPRR1BP22528 89 aa9.53□□□□□ -0.88
UPF3B-202ENST00000345865 TMEM254Q8TBM7 123 aa9.53□□□□□ -0.88
UPF3B-202ENST00000345865 LINC00474Q9P2X8 69 aa9.52□□□□□ -0.89
UPF3B-202ENST00000345865 FAM236DA0A1B0GTK5 79 aa9.51□□□□□ -0.89
UPF3B-202ENST00000345865 FAM236CP0DP71 79 aa9.51□□□□□ -0.89
UPF3B-202ENST00000345865 KRTAP13-1Q8IUC0 172 aa9.51□□□□□ -0.89
UPF3B-202ENST00000345865 DNAH8Q96JB1 4490 aa9.51□□□□□ -0.89
UPF3B-202ENST00000345865 SPACA4Q8TDM5 124 aa9.5□□□□□ -0.89
UPF3B-202ENST00000345865 A0A087WTM6 91 aa9.49□□□□□ -0.89
UPF3B-202ENST00000345865 FAM30AQ9NZY2 134 aa9.49□□□□□ -0.89
UPF3B-202ENST00000345865 FBN3Q75N90 2809 aa9.48□□□□□ -0.89
UPF3B-202ENST00000345865 PKIGQ9Y2B9 76 aa9.48□□□□□ -0.89
UPF3B-202ENST00000345865 A0A0U1RQV1 116 aa9.47□□□□□ -0.89
UPF3B-202ENST00000345865 TGP01266 2768 aa9.46□□□□□ -0.89
UPF3B-202ENST00000345865 RPL37AP61513 92 aaKnown RBP9.44□□□□□ -0.9
UPF3B-202ENST00000345865 Q6ZR54 194 aa9.44□□□□□ -0.9
UPF3B-202ENST00000345865 NDUFC1O43677 76 aa9.44□□□□□ -0.9
UPF3B-202ENST00000345865 HCG22E2RYF7 251 aa9.43□□□□□ -0.9
UPF3B-202ENST00000345865 LCE6AA0A183 80 aa9.42□□□□□ -0.9
UPF3B-202ENST00000345865 RTL8CO15255 209 aa9.42□□□□□ -0.9
UPF3B-202ENST00000345865 DNAH6Q9C0G6 4158 aa9.41□□□□□ -0.9
UPF3B-202ENST00000345865 LINC00472Q9H8W2 130 aa9.39□□□□□ -0.91
UPF3B-202ENST00000345865 SERP1Q9Y6X1 66 aa9.39□□□□□ -0.91
UPF3B-202ENST00000345865 WFDC13Q8IUB5 93 aa9.38□□□□□ -0.91
UPF3B-202ENST00000345865 Q5XG85 94 aa9.37□□□□□ -0.91
UPF3B-202ENST00000345865 PSORS1C2Q9UIG4 136 aa9.37□□□□□ -0.91
UPF3B-202ENST00000345865 DNAH11Q96DT5 4516 aa9.36□□□□□ -0.91
UPF3B-202ENST00000345865 DNAH5Q8TE73 4624 aa9.36□□□□□ -0.91
UPF3B-202ENST00000345865 IGLV9-49A0A0B4J1Y8 123 aa9.36□□□□□ -0.91
UPF3B-202ENST00000345865 IGLV5-52A0A0A0MRZ9 124 aa9.34□□□□□ -0.91
UPF3B-202ENST00000345865 KRTAP29-1A8MX34 341 aaPredicted RBP9.34□□□□□ -0.91
UPF3B-202ENST00000345865 SVIPQ8NHG7 77 aa9.34□□□□□ -0.91
UPF3B-202ENST00000345865 PLAC8Q9NZF1 115 aa9.34□□□□□ -0.91
UPF3B-202ENST00000345865 ALMS1Q8TCU4 4167 aa9.34□□□□□ -0.91
UPF3B-202ENST00000345865 LINC00483Q53H64 154 aa9.33□□□□□ -0.92
UPF3B-202ENST00000345865 PRR15Q8IV56 129 aa9.33□□□□□ -0.92
UPF3B-202ENST00000345865 ZCCHC13Q8WW36 166 aaKnown RBP9.33□□□□□ -0.92
UPF3B-202ENST00000345865 C4orf26Q17RF5 130 aa9.32□□□□□ -0.92
UPF3B-202ENST00000345865 A8MWP4 228 aa9.32□□□□□ -0.92
UPF3B-202ENST00000345865 ANAPC11Q9NYG5 84 aa9.31□□□□□ -0.92
UPF3B-202ENST00000345865 ATP5EP56381 51 aaPredicted RBP9.31□□□□□ -0.92
UPF3B-202ENST00000345865 C1orf134Q5TEV5 83 aa9.31□□□□□ -0.92
UPF3B-202ENST00000345865 C5orf47Q569G3 176 aa9.3□□□□□ -0.92
UPF3B-202ENST00000345865 WWC2-AS2Q96NR7 200 aa9.3□□□□□ -0.92
UPF3B-202ENST00000345865 Q96NJ1 140 aa9.29□□□□□ -0.92
UPF3B-202ENST00000345865 HRCT1Q6UXD1 115 aa9.28□□□□□ -0.92
UPF3B-202ENST00000345865 HYDINQ4G0P3 5121 aa9.28□□□□□ -0.92
UPF3B-202ENST00000345865 CASC2Q6XLA1 102 aa9.28□□□□□ -0.92
UPF3B-202ENST00000345865 ZNF861PO60384 105 aa9.27□□□□□ -0.92
UPF3B-202ENST00000345865 LY6G6CO95867 125 aa9.27□□□□□ -0.92
UPF3B-202ENST00000345865 MOBPQ13875 183 aa9.27□□□□□ -0.93
UPF3B-202ENST00000345865 FP248Q71RG6 208 aaPredicted RBP9.26□□□□□ -0.93
UPF3B-202ENST00000345865 FAM229BQ4G0N7 80 aa9.24□□□□□ -0.93
UPF3B-202ENST00000345865 ZNF706Q9Y5V0 76 aaPredicted RBP9.24□□□□□ -0.93
UPF3B-202ENST00000345865 PKD1P98161 4303 aa9.24□□□□□ -0.93
UPF3B-202ENST00000345865 MMP24-AS1A0A0U1RRL7 71 aa9.23□□□□□ -0.93
UPF3B-202ENST00000345865 FAT2Q9NYQ8 4349 aa9.23□□□□□ -0.93
UPF3B-202ENST00000345865 SMIM26A0A096LP01 95 aa9.21□□□□□ -0.93
UPF3B-202ENST00000345865 KRTAP10-2P60368 255 aa9.21□□□□□ -0.94
UPF3B-202ENST00000345865 LRP1BQ9NZR2 4599 aa9.2□□□□□ -0.94
UPF3B-202ENST00000345865 LINC00208Q96KT6 92 aa9.19□□□□□ -0.94
UPF3B-202ENST00000345865 IGLV7-43P04211 117 aa9.19□□□□□ -0.94
UPF3B-202ENST00000345865 MP68P56378 58 aa9.18□□□□□ -0.94
UPF3B-202ENST00000345865 H0Y9P7 68 aa9.17□□□□□ -0.94
UPF3B-202ENST00000345865 NDUFB1O75438 58 aa9.17□□□□□ -0.94
UPF3B-202ENST00000345865 TRAV22A0A0B4J277 110 aa9.16□□□□□ -0.94
UPF3B-202ENST00000345865 hDV103S1A0JD37 113 aa9.16□□□□□ -0.94
UPF3B-202ENST00000345865 PRR4Q16378 134 aa9.16□□□□□ -0.94
UPF3B-202ENST00000345865 CIRBP-AS1Q8TBR5 109 aa9.16□□□□□ -0.94
UPF3B-202ENST00000345865 ASB16-AS1Q495Z4 193 aa9.15□□□□□ -0.94
UPF3B-202ENST00000345865 C1orf64Q8NEQ6 169 aa9.14□□□□□ -0.95
UPF3B-202ENST00000345865 C8orf17Q9NRJ1 99 aa9.13□□□□□ -0.95
UPF3B-202ENST00000345865 A0A087X002 238 aa9.11□□□□□ -0.95
UPF3B-202ENST00000345865 IGHV6-1A0A0B4J1U7 121 aa9.11□□□□□ -0.95
UPF3B-202ENST00000345865 NOTCH2NLQ7Z3S9 236 aa9.11□□□□□ -0.95
UPF3B-202ENST00000345865 A0A1B0GVX0 72 aa9.1□□□□□ -0.95
UPF3B-202ENST00000345865 VPS13BQ7Z7G8 4022 aa9.1□□□□□ -0.95
UPF3B-202ENST00000345865 CYP4F30PQ9H0H9 118 aa9.1□□□□□ -0.95
UPF3B-202ENST00000345865 H3BPC8 53 aa9.09□□□□□ -0.95
UPF3B-202ENST00000345865 MPLKIPQ8TAP9 179 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms